I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 19:56:51 +14 2025 I: pbuilder-time-stamp: 1761803811 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seqan2_2.4.0+dfsg-16.dsc] I: copying [./seqan2_2.4.0+dfsg.orig.tar.xz] I: copying [./seqan2_2.4.0+dfsg-16.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 15 15:26:25 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan2_2.4.0+dfsg-16.dsc: no acceptable signature found dpkg-source: info: extracting seqan2 in seqan2-2.4.0+dfsg dpkg-source: info: unpacking seqan2_2.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking seqan2_2.4.0+dfsg-16.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying skip-seqan-revision dpkg-source: info: applying fix-version_check-test dpkg-source: info: applying skip-some-apps-on-some-archs dpkg-source: info: applying tweak_readmes dpkg-source: info: applying install_fiona_illumina dpkg-source: info: applying ctdVersion.patch dpkg-source: info: applying fix_manpage_formatting.patch dpkg-source: info: applying no-unaligned-access.patch dpkg-source: info: applying ia64_yield dpkg-source: info: applying python3 dpkg-source: info: applying fix_python3_tests I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1633/tmp/hooks/D01_modify_environment starting debug: Running on infom08-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 30 05:57 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1633/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1633/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=eb4214e843644671b5a0e776466a7b31 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1633 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rshwr2mO/pbuilderrc_PwAf --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rshwr2mO/b2 --logfile b2/build.log seqan2_2.4.0+dfsg-16.dsc' SUDO_GID=111 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.10.6+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.6-1~bpo12+1 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1633/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, cmake, fakeroot, zlib1g-dev, libbz2-dev, libbam-dev, libboost-dev, help2man, ctdconverter dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ctdconverter; however: Package ctdconverter is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} ctdconverter{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbam-dev{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libxslt1.1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-ctdopts{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-typeguard{a} python3-typing-extensions{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib wget 0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 59.2 MB of archives. After unpacking 338 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7 [15.1 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.6-1 [2242 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.5-1+b1 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 13 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.6-1 [669 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.5-1+b1 [9884 B] Get: 23 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.5-1+b1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-5 [65.6 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-5 [875 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1 [390 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.10.1-1 [391 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-6 [157 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.30.3-1 [2221 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 cmake i386 3.30.3-1 [12.5 MB] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-ctdopts all 1.5-5 [22.5 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1.1 [242 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.3.0-1 [1239 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.4.0-1 [63.7 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 67 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 python3-ruamel.yaml.clib i386 0.2.8+ds-2 [133 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 ctdconverter all 2.1-7 [27.7 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 78 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libbam-dev i386 0.1.19+dfsg-6 [130 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-3.2 [10.6 MB] Get: 88 http://deb.debian.org/debian trixie/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] Get: 89 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Fetched 59.2 MB in 1s (96.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../libpython3.12-minimal_3.12.6-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_i386.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:i386 (3.12.6-1) ... Setting up libexpat1:i386 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20104 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.5-1+b1_i386.deb ... Unpacking python3-minimal (3.12.5-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libuv1t64:i386 (1.48.0-6) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.63.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 30 05:57:12 UTC 2025. Universal Time is now: Thu Oct 30 05:57:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:i386 (2:4.0.4-5) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up netbase (6.4) ... Setting up cmake-data (3.30.3-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libboost-dev:i386 (1.83.0.2+b2) ... Setting up libssh2-1t64:i386 (1.11.0-7) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up libbz2-dev:i386 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:i386 (1.1.35-1.1) ... Setting up libarchive13t64:i386 (3.7.4-1) ... Setting up libcurl4t64:i386 (8.10.1-1) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b2) ... Setting up cmake (3.30.3-1) ... Setting up libpython3.12-stdlib:i386 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:i386 (3.12.5-1+b1) ... Setting up python3 (3.12.5-1+b1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-lxml:i386 (5.3.0-1) ... Setting up python3-more-itertools (10.4.0-1) ... Setting up python3-jaraco.functools (4.0.2-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-ctdopts (1.5-5) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-ruamel.yaml.clib:i386 (0.2.8+ds-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up ctdconverter (2.1-7) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1633/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1633/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqan2-2.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan2_2.4.0+dfsg-16_source.changes dpkg-buildpackage: info: source package seqan2 dpkg-buildpackage: info: source version 2.4.0+dfsg-16 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_auto_clean find . -type f -name "*.pyc" -delete if [ -d orig ] ; then \ for header in `find orig -name "*generated_forwards.h"` ; do \ mv ${header} `echo $header | sed 's?orig/??'` ; \ done ; \ fi rm -rf orig make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars debian/files rm -fr -- debian/seqan-apps/ debian/tmp/ debian/libseqan2-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' # Test seems to fail temporarily (see bug #1058548) find . -name "solution_online_search_finder.cpp*" -delete export DEB_BUILD_ARCH=i386 ; \ dh_auto_configure --arch -- \ -DSEQAN_STATIC_APPS=False -DSEQAN_NO_DOX=1 \ -DSEQAN_DISABLE_VERSION_CHECK=YES cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DSEQAN_STATIC_APPS=False -DSEQAN_NO_DOX=1 -DSEQAN_DISABLE_VERSION_CHECK=YES .. CMake Warning (dev) at CMakeLists.txt:9 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Initializing SeqAn Build System... -- Scanning dependencies once in DEVELOP mode... -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/i386-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:359 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:123 (seqan_build_system_init) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success CMake Warning (dev) at util/cmake/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:360 (find_package) CMakeLists.txt:123 (seqan_build_system_init) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /build/reproducible-path/seqan2-2.4.0+dfsg/include (found version "2.4.0") -- Selected repository dir: /build/reproducible-path/seqan2-2.4.0+dfsg -- Repository date not determined. -- Repository revision not determined. -- Configuring tests CMake Deprecation Warning at tests/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests CMake Deprecation Warning at tests/align/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/align -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- SIMD acceleration is only available on 64bit systems -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. CMake Deprecation Warning at tests/align_extend/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/align_extend CMake Deprecation Warning at tests/align_parallel/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/align_parallel -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. CMake Deprecation Warning at tests/align_profile/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/align_profile CMake Deprecation Warning at tests/align_split/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/align_split CMake Deprecation Warning at tests/alignment_free/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/alignment_free CMake Deprecation Warning at tests/arg_parse/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/arg_parse CMake Deprecation Warning at tests/bam_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/bam_io CMake Deprecation Warning at tests/basic/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/basic CMake Deprecation Warning at tests/bed_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/bed_io CMake Deprecation Warning at tests/blast/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/blast CMake Deprecation Warning at tests/consensus/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/consensus CMake Deprecation Warning at tests/consensus_v2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/consensus_v2 CMake Deprecation Warning at tests/find/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/find CMake Deprecation Warning at tests/gff_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/gff_io CMake Deprecation Warning at tests/graph_algorithms/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/graph_algorithms CMake Deprecation Warning at tests/graph_align/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/graph_align CMake Deprecation Warning at tests/graph_msa/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/graph_msa CMake Deprecation Warning at tests/graph_types/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/graph_types CMake Deprecation Warning at tests/index/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/index CMake Deprecation Warning at tests/journaled_set/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/journaled_set CMake Deprecation Warning at tests/journaled_string_tree/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/journaled_string_tree CMake Deprecation Warning at tests/map/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/map CMake Deprecation Warning at tests/misc/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/misc CMake Deprecation Warning at tests/modifier/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/modifier CMake Deprecation Warning at tests/modifier_cyclic_shape/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/modifier_cyclic_shape CMake Deprecation Warning at tests/multiple_translation_units/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/multiple_translation_units CMake Deprecation Warning at tests/parallel/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/parallel CMake Deprecation Warning at tests/parse_lm/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/parse_lm CMake Deprecation Warning at tests/pipe/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/pipe CMake Deprecation Warning at tests/platform/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/platform CMake Deprecation Warning at tests/random/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/random CMake Deprecation Warning at tests/realign/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/realign CMake Deprecation Warning at tests/reduced_aminoacid/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/reduced_aminoacid CMake Deprecation Warning at tests/rna_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/rna_io CMake Deprecation Warning at tests/roi_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/roi_io CMake Deprecation Warning at tests/score/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/score CMake Deprecation Warning at tests/seeds/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/seeds CMake Deprecation Warning at tests/seq_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/seq_io CMake Deprecation Warning at tests/sequence/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/sequence CMake Deprecation Warning at tests/sequence_journaled/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/sequence_journaled CMake Deprecation Warning at tests/simd/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/simd -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. CMake Deprecation Warning at tests/simple_intervals_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/simple_intervals_io CMake Deprecation Warning at tests/statistics/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/statistics CMake Deprecation Warning at tests/store/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/store CMake Deprecation Warning at tests/stream/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/stream CMake Deprecation Warning at tests/swift_local/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/find_swift CMake Deprecation Warning at tests/tabix_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/tabix_io CMake Deprecation Warning at tests/translation/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/translation CMake Deprecation Warning at tests/ucsc_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/test_ucsc_io CMake Deprecation Warning at tests/vcf_io/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring tests/vcf_io -- Configuring demos CMake Deprecation Warning at demos/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.6", minimum required is "2.7") CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:761 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): util/cmake/SeqAnBuildSystem.cmake:838 (_seqan_setup_demo_test) demos/CMakeLists.txt:15 (seqan_register_demos) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring apps CMake Deprecation Warning at apps/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at apps/alf/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/alf CMake Deprecation Warning at apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/bs_tools CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/bs_tools/CMakeLists.txt:123 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/dfi/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/dfi CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/dfi/CMakeLists.txt:74 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/fiona/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/fiona -- Not building fiona on 32bit architectures. CMake Deprecation Warning at apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/fx_tools CMake Deprecation Warning at apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/gustaf CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/gustaf/CMakeLists.txt:97 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/insegt/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/insegt CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/insegt/CMakeLists.txt:88 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/mason2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/mason2 CMake Deprecation Warning at apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/micro_razers CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/micro_razers/CMakeLists.txt:81 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/ngs_roi CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/ngs_roi/CMakeLists.txt:114 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/pair_align CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/pair_align/CMakeLists.txt:80 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/param_chooser CMake Deprecation Warning at apps/rabema/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/rabema CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/rabema/CMakeLists.txt:110 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/razers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/razers CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/razers/CMakeLists.txt:100 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/razers3/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/razers3 CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/razers3/CMakeLists.txt:127 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/razers3/CMakeLists.txt:128 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/rep_sep CMake Deprecation Warning at apps/sak/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/sak CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/sak/CMakeLists.txt:86 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/sam2matrix CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/sam2matrix/CMakeLists.txt:74 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/samcat/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/samcat CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/samcat/CMakeLists.txt:81 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/searchjoin CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/searchjoin/CMakeLists.txt:84 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/seqan_tcoffee CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/seqan_tcoffee/CMakeLists.txt:73 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/seqcons2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/seqcons2 CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/seqcons2/CMakeLists.txt:80 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/sgip/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/sgip CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/sgip/CMakeLists.txt:80 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/snp_store CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/snp_store/CMakeLists.txt:89 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/splazers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/splazers -- Not building splazers on 32bit architectures. CMake Deprecation Warning at apps/stellar/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/stellar CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/stellar/CMakeLists.txt:79 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/tree_recon CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): apps/tree_recon/CMakeLists.txt:73 (seqan_add_app_test) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at apps/yara/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring apps/yara -- Not building yara on i386 due to memory requirements. -- Configuring done (5.7s) -- Generating done (1.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_auto_configure --indep -B build -- \ -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 .. CMake Warning (dev) at CMakeLists.txt:9 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Initializing SeqAn Build System... -- Selected repository dir: /build/reproducible-path/seqan2-2.4.0+dfsg -- Repository date not determined. -- Repository revision not determined. -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan2-2.4.0+dfsg/build make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' rm -f debian/libseqan2-dev.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_auto_build --arch "" cd obj-i686-linux-gnu && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan2-2.4.0+dfsg -B/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/external_split_merge.cpp cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -MF CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o.d -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -MF CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/external_split_merge.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/external_split_merge.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/external_split_merge.h:49: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/external_split_merge.h:53: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here 41 | pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_options.h:53, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2) [with TValue = int; TCargo = GenomicInterval; TValue2 = int]' 1502 | findIntervals(result, it.g, it.pm, query); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.cpp:718:18: required from here 718 | findIntervals(intervals, svIntervalTree, svPos); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Built target pair_align_lcs make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_options.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_options.h:51, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_options.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_options.h:53: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_options.h:53, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 1%] Built target pair_align_global_1000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 1%] Built target pair_align_global_1111 [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 1%] Built target pair_align_local make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.cpp [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.h:42: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.cpp:106:14: required from here 106 | if (!open(stream, filename)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.cpp:106:14: required from here 106 | if (!open(stream, filename)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.cpp:106:14: required from here 106 | if (!open(stream, filename)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:264:56: required from here 264 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:264:56: required from here 264 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' 193 | TFragIter it = begin(frag, seqan::Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:264:26: required from here 264 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' 193 | TFragIter it = begin(frag, seqan::Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp:264:26: required from here 264 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:56: required from here 153 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:56: required from here 153 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' 59 | TFragIter it = begin(frag, seqan::Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:26: required from here 153 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' 59 | TFragIter it = begin(frag, seqan::Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:26: required from here 153 | _simulateSequence(seq, rng, TRevCompFrag(holder), cigar); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:167:18: required from here 167 | if (!open(vcfFileIn, toCString(vcfFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:167:18: required from here 167 | if (!open(vcfFileIn, toCString(vcfFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 2%] Linking CXX static library libmason_sim.a cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /usr/bin/ranlib libmason_sim.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target mason_sim make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_1001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 86 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' 184 | _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' 276 | pairwise_align(sc, seqfile, alg, low, high, banded, outfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' 289 | _initAlignParams(options, sc, alg, spec); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' 364 | if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here 68 | pairAlignConfig(options, NeedlemanWunsch(), config); \ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target pair_align_global_1010 make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:32: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:33, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:30, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:676:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 676 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:704:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 704 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:730:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 730 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:748:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:770:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:32: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1430:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1430 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:222: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1653 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2242 | return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1653 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2245 | return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1430:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' 1430 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1431:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' 1431 | TReadRev readRev(readSet[rseqNo]); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1653 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2253 | return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1653 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2256:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2256 | return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1399:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' 1399 | TMyersFinder myersFinder(inf); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1432:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' 1432 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1625:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1625 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2239:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2239 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1625:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1625 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2242 | return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1625:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1625 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2245 | return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:28: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1636 | return find(finder, pattern, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' 1654 | return find(finder, pattern, pattern, minScore); //static cast | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1414:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' 1414 | while (find(myersFinder, myersPattern, minScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 469 | TIterator temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1432:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' 1432 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' 1658 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' 599 | return container(hostIterator(me)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' 1636 | return find(finder, pattern, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' 1654 | return find(finder, pattern, pattern, minScore); //static cast | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:1437:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2076 | mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2250 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2047:11: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2047 | setHost(forwardPatterns[i], indexText(swiftIndex)[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2150 | return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:2239:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' 2239 | return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' 712 | mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' 1079 | makeSelectedStatsFile(errorDistribution,pm_options); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: required from here 339 | chooseParams(r_options, pm_options); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target pair_align_global_1011 make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:42: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:33, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target pair_align_global_1100 make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/prepare_sam.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:30, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:676:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 676 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:704:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 704 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:730:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 730 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:748:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:770:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/prepare_sam.cpp:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/prepare_sam.cpp:27: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:32: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:11: required from here 604 | if (!open(seqFile, fname) || atEnd(seqFile)) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::__cxx11::basic_stringstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:829:51: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::__cxx11::basic_stringstream; TSpec = RazerSSpec<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target pair_align_global_1101 make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:31: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:829:51, inlined from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:1107:20, inlined from 'int main(int, const char**)' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:339:21: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main(int, const char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Linking CXX executable ../../bin/test_funcs_param_chooser cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target test_funcs_param_chooser make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:254:100: required from here 254 | TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:52: required from here 257 | for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' 469 | TIterator temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:52: required from here 257 | for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:513:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' 513 | typename Iterator, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:91: required from here 257 | for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:403:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = unsigned int]' 403 | Pattern pattern(read, -(int)length(read) * 40); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:899:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, seqan::BamFileIn&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag; TErrorCurves = std::map >; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 899 | buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 | readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:1203:37: required from here 1203 | res = matchesToErrorFunction(errorCurves, readAlignmentDistances, inBam, readNameStore, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1204 | contigNames(context(inBam)), faiIndex, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:403:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = unsigned int]' 403 | Pattern pattern(read, -(int)length(read) * 40); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:899:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, seqan::BamFileIn&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag; TErrorCurves = std::map >; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 899 | buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 | readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:1203:37: required from here 1203 | res = matchesToErrorFunction(errorCurves, readAlignmentDistances, inBam, readNameStore, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1204 | contigNames(context(inBam)), faiIndex, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]' 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:403:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = unsigned int]' 403 | Pattern pattern(read, -(int)length(read) * 40); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:899:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, seqan::BamFileIn&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag; TErrorCurves = std::map >; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 899 | buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 | readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp:1203:37: required from here 1203 | res = matchesToErrorFunction(errorCurves, readAlignmentDistances, inBam, readNameStore, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1204 | contigNames(context(inBam)), faiIndex, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 3%] Linking CXX executable ../../bin/param_chooser cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target param_chooser make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:28: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:3: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:11: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2) [with TValue = unsigned int; TCargo = unsigned int; TValue2 = unsigned int]' 1502 | findIntervals(result, it.g, it.pm, query); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:644:22: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 644 | findIntervals(queryResult, intervalTrees[seqId], lastPos); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 1003 | int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 | faiIndex, refSeqs, refIdMapping, options, tagPattern, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 | /*pairedEnd=*/ false); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1401:45: required from here 1401 | res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1402 | inGsiIter, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:13: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:254:100: required from here 254 | TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:52: required from here 257 | for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' 469 | TIterator temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:52: required from here 257 | for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:513:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' 513 | typename Iterator, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:91: required from here 257 | for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:623:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 623 | Pattern pattern(readSeq, -static_cast(length(readSeq)) * 1000); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 1003 | int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 | faiIndex, refSeqs, refIdMapping, options, tagPattern, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 | /*pairedEnd=*/ false); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1401:45: required from here 1401 | res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1402 | inGsiIter, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:623:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 623 | Pattern pattern(readSeq, -static_cast(length(readSeq)) * 1000); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 1003 | int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 | faiIndex, refSeqs, refIdMapping, options, tagPattern, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 | /*pairedEnd=*/ false); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1401:45: required from here 1401 | res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1402 | inGsiIter, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]' 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:623:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 623 | Pattern pattern(readSeq, -static_cast(length(readSeq)) * 1000); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' 1003 | int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 | faiIndex, refSeqs, refIdMapping, options, tagPattern, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 | /*pairedEnd=*/ false); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:1401:45: required from here 1401 | res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1402 | inGsiIter, options, MyersUkkonenReads()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here 27 | Pattern pattern(read, -static_cast(length(read))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(Holder >&, const TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 840 | set(value(me), value_); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here 27 | Pattern pattern(read, -static_cast(length(read))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]' 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' 94 | _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here 27 | Pattern pattern(read, -static_cast(length(read))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 3%] Linking CXX executable ../../bin/rabema_do_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -lz -lbz2 In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target rabema_do_search make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:28, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:696:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 696 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:728:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 728 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:760:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 760 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:51: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:55: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:221:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 221 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Linking CXX executable ../../bin/rabema_prepare_sam cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target rabema_prepare_sam [ 4%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/param_tabs.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:622:23: required from here 622 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:622:23: required from here 622 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:622:23: required from here 622 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1471:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1471:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:622:23: required from here 622 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = VirtualStream >; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/outputFormat.h:722:12: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 722 | file << reads[(*it).rseqNo]; | ~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:232:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 232 | dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:622:23: required from here 622 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:395:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' 395 | data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:394:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 394 | TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1928 | pattern.finderLength = pattern.params.tabooLength + length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:222: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2268 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1699 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2268 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2271 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1699 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2271 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1928 | pattern.finderLength = pattern.params.tabooLength + length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1471:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1472:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1472 | TReadRev readRev(readSet[rseqNo]); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2279:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2279 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1699 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2279:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2279 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2282:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2282 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1699 | while (find(swiftFinder, swiftPattern, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2282:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2282 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target pair_align_global_1110 make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1866 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1934 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1876:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1876 | finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1934 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1845:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1845 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1965 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1866 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1934 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1473 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = VirtualStream >; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/outputFormat.h:722:12: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 722 | file << reads[(*it).rseqNo]; | ~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:232:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 232 | dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:375:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 375 | TReadSet &readSetL = host(host(swiftPatternL)); | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1666 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:375:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 375 | TReadSet &readSetL = host(host(swiftPatternL)); | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2268 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1666 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2268 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:375:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 375 | TReadSet &readSetL = host(host(swiftPatternL)); | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2271 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1666 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2271 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1636 | return find(finder, pattern, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; TFindBeginPatternSpec = void]' 1654 | return find(finder, pattern, pattern, minScore); //static cast | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1455:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1455 | while (find(myersFinder, myersPattern, minScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 469 | TIterator temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1473 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1845:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1845 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' 1965 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 428 | while (find(swiftFinderR, swiftPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' 599 | return container(hostIterator(me)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' 1636 | return find(finder, pattern, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' 1654 | return find(finder, pattern, pattern, minScore); //static cast | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1478:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1478 | while (find(myersFinderRev, myersPatternRev, maxScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 492 | if (matchVerify( | ~~~~~~~~~~~^ 493 | (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 | rseqNo, readSetL, forwardPatternsL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | options, TSwiftSpec())) | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:1971:11: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 1971 | setHost(forwardPatterns[i], indexText(swiftIndex)[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_wotd.h:259:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:394:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' 394 | TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 777 | mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2203 | return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 209 | int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:697:26: required from here 697 | int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/param_tabs.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:57: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:127:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:83: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:265:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 265 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:321:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 321 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:366:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 366 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:23: required from here 785 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1304 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1307 | return dumpMatches(store, stats, readFName, options, RazerSMode, TMatchNPolicy>()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1348 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1304 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1348 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1307 | return dumpMatches(store, stats, readFName, options, RazerSMode, TMatchNPolicy>()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1348 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1351 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1304 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1351 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1307 | return dumpMatches(store, stats, readFName, options, RazerSMode, TMatchNPolicy>()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1351 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1356 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1304 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1356 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1307 | return dumpMatches(store, stats, readFName, options, RazerSMode, TMatchNPolicy>()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1356 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1359 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1304 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1359 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1307 | return dumpMatches(store, stats, readFName, options, RazerSMode, TMatchNPolicy>()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1359 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1362:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1362 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1304 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1362:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1362 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1307 | return dumpMatches(store, stats, readFName, options, RazerSMode, TMatchNPolicy>()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1362:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1362 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:23: required from here 785 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:23: required from here 785 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:23: required from here 785 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:745:69: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = VirtualStream >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' 745 | ModifiedString > quals(fragStore.readSeqStore[idCount]); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1222:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1222 | write(file, store, Amos()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:23: required from here 785 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:85: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1662 | return _mapMatePairReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:33: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1662 | return _mapMatePairReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:21: required from here 120 | if (!loadContigs(store, toCString(referenceFile))) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1662 | return _mapMatePairReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:21: required from here 120 | if (!loadContigs(store, toCString(referenceFile))) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1662 | return _mapMatePairReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:21: required from here 120 | if (!loadContigs(store, toCString(referenceFile))) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1463 | initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter >, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:740:27: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = VirtualStream >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' 740 | writeWrappedString(iter, fragStore.readSeqStore[idCount], 60); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1222:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1222 | write(file, store, Amos()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(const ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter >, StreamIterator > >; TSequence = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:746:27: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = VirtualStream >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' 746 | writeWrappedString(iter, quals, 60); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1222:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1222 | write(file, store, Amos()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:21: required from here 120 | if (!loadContigs(store, toCString(referenceFile))) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:21: required from here 120 | if (!loadContigs(store, toCString(referenceFile))) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:223: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' 2785 | _patternInit(filterPattern, options.errorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1088 | _applyFilterOptions(filterPatternL, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:222: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' 2896 | _patternInit(filterPattern, options.errorRate, 0); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1088 | _applyFilterOptions(filterPatternL, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions >]' 2785 | _patternInit(filterPattern, options.errorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1088 | _applyFilterOptions(filterPatternL, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' 2896 | _patternInit(filterPattern, options.errorRate, 0); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1088 | _applyFilterOptions(filterPatternL, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 4%] Linking CXX executable ../../bin/rabema_build_gold_standard cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target rabema_build_gold_standard make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:32: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 696 | while (find(filterFinderR, filterPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2979 | matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3054 | _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3216 | return _mapSingleReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' 2785 | _patternInit(filterPattern, options.errorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 3026 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3221 | return _mapSingleReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2979 | matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 3054 | _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3221 | return _mapSingleReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:2081:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 2081 | pattern.finderLength = pattern.params.tabooLength + length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 1200 | if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1489 | _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' 296 | matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 751 | workVerification(tls, job, splitters); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1033 | _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' 2785 | _patternInit(filterPattern, options.errorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]' 872 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' 296 | matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 751 | workVerification(tls, job, splitters); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1033 | _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' 2896 | _patternInit(filterPattern, options.errorRate, 0); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3026 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3216 | return _mapSingleReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2979 | matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3054 | _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3216 | return _mapSingleReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' 2896 | _patternInit(filterPattern, options.errorRate, 0); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]' 872 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' 296 | matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 751 | workVerification(tls, job, splitters); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1033 | _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 696 | while (find(filterFinderR, filterPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions >]' 2785 | _patternInit(filterPattern, options.errorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 3026 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3221 | return _mapSingleReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:2081:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 2081 | pattern.finderLength = pattern.params.tabooLength + length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 1200 | if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1489 | _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions >]' 2785 | _patternInit(filterPattern, options.errorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]' 872 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' 2896 | _patternInit(filterPattern, options.errorRate, 0); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3026 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3216 | return _mapSingleReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' 2896 | _patternInit(filterPattern, options.errorRate, 0); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]' 872 | _applyFilterOptions(filterPattern, options); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1008 | initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2979 | matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 3054 | _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 3216 | return _mapSingleReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2979 | matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 3054 | _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 3221 | return _mapSingleReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' 296 | matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 751 | workVerification(tls, job, splitters); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1033 | _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' 296 | matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 751 | workVerification(tls, job, splitters); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' 1033 | _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1202 | return _mapSingleReadsParallel(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2979 | matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 3054 | _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 3146 | return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 3216 | return _mapSingleReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' 296 | matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 751 | workVerification(tls, job, splitters); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' 1033 | _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' 1197 | return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String, Alloc<> >; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String, Alloc<> >; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2067:42: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = True]' 2067 | insertGap(gaps, insPos - rBegin); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1221:40: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1221 | convertMatchesToGlobalAlignment(store, scoreType, True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:395:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' 395 | data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:680:20: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 680 | TFilterFinderR filterFinderR(genomeInf, options.repeatLength, 1); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3247 | return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 696 | while (find(filterFinderR, filterPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 941 | finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 696 | while (find(filterFinderR, filterPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:910:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 910 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:1006:37: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1006 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 696 | while (find(filterFinderR, filterPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1866 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:2088:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 2088 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 1200 | if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1489 | _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 696 | while (find(filterFinderR, filterPatternR, options.errorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' 1115 | _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 3252 | return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 1866 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:2088:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' 2088 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 1200 | if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' 1489 | _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' 1657 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 507 | TErrors mdErrors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:529:32: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 529 | _alignAndGetCigarString(cigar, md, contigInfix, readSeq, alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 507 | TErrors mdErrors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:529:32: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 529 | _alignAndGetCigarString(cigar, md, contigInfix, readSeq, alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 507 | TErrors mdErrors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:534:32: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 534 | _alignAndGetCigarString(cigar, md, contigInfix, reverseComplementString(readSeq), alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:398:24: required from 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >]' 398 | appendValue(indexText(indexL), readSetL[j]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = const Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:859:24: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >]' 859 | appendValue(indexText(index), store.readSeqStore[j]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 507 | TErrors mdErrors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:529:32: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 507 | TErrors mdErrors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:529:32: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' 507 | TErrors mdErrors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:534:32: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:654:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 654 | TReadSet & readSetL = host(host(filterPatternL)); | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 469 | TIterator temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2241:41: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' 2241 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 793 | if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | leftReadId, readSetL[matePairId], mode)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' 2795 | std::cout << " stepsize: " << getStepSize(host(filterPattern)) << std::endl; | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1088:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:852:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >]' 852 | TIndex & index = host(tls.filterPattern); | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:852:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]' 852 | TIndex & index = host(tls.filterPattern); | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:654:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 654 | TReadSet & readSetL = host(host(filterPatternL)); | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:1115:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:852:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]' 852 | TIndex & index = host(tls.filterPattern); | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:989:66: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = const Segment, Alloc<> >, InfixSegment>; TNeedle2 = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' 989 | typename Size::Type const columns = length(container(finder)) + state.leftClip; | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1181:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = const Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' 1181 | return _patternInitSmallStateBanded(finder, needle, state); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1535:24: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = const Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' 1535 | if (!_stateInit(finder, needle, state)) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1646:16: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = const Segment, Alloc<> >, InfixSegment>; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' 1646 | return find(finder, needle, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2177:16: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' 2177 | while (find(myersFinder, readPrefix, state, minScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:430:24: required from 'void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 430 | goEnd(it, container(it)); | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:737:10: required from 'void seqan::goEnd(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void]' 737 | goEnd(hostIterator(me)); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1537:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' 1537 | goEnd(finder); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1646:16: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' 1646 | return find(finder, needle, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2245:32: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' 2245 | while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs.h:793:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3340 | return _mapMatePairReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2948 | TReadSet & readSet = indexText(host(filterPattern)); | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' 2795 | std::cout << " stepsize: " << getStepSize(host(filterPattern)) << std::endl; | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3026:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = const Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = const Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:859:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = const Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = const Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:859:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' 2948 | TReadSet & readSet = indexText(host(filterPattern)); | ~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3343 | return _mapSingleReads(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 160 | FilterPatternLSetMaxErrorsWrapper wrapperL(value(filter.callback)); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 962 | disabled += processRead(*tls.matchFilter, it->readId / 2); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 251 | limitRead(value(filter.callback), readId, newLimit - 1); | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' 466 | disabled += processRead(*tls.matchFilter, it->readId); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_base.h:151:37: required from 'typename seqan::Convert >::Type seqan::convertImpl(Convert, const Proxy&) [with TTarget = char; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >::Type = char]' 151 | return convert(getValue(source)); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = char; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = char]' 149 | return convertImpl(Convert(), source); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:241:45: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:46: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = ModifiedAlphabet, ModExpand<'-'> >; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = ModifiedAlphabet, ModExpand<'-'> >]' 149 | return convertImpl(Convert(), source); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:92:59: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:17: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_base.h:151:37: required from 'typename seqan::Convert >::Type seqan::convertImpl(Convert, const Proxy&) [with TTarget = char; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >::Type = char]' 151 | return convert(getValue(source)); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:45: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(const ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = ModView > >; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:314:32: required from 'typename seqan::Position > >::Type seqan::position(const ModifiedIterator >&) [with THost = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >; typename Position > >::Type = unsigned int]' 314 | return length(container(host(me))); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:675:73: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 675 | sequenceEntryForScore(scoringScheme, seqV, position(seqVBegin)), scoringScheme, | ~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:288:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 288 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_base.h:151:37: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1210 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = ModView > >; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:30: required from 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 278 | TContainer cont(container(host(me))); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:397:81: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 397 | tmpSeqH, sequenceEntryForScore(scoringScheme, container(iter), position(iter)), | ~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 891 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 | sequenceEntryForScore(scoringScheme, seqH, position(seqHIter)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 | seqVBegin, seqVEnd, scoringScheme, cacheDiag, cacheVert, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' 1215 | writeAlignments(bamFile, store, func); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' 1301 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' 1345 | return dumpMatches(store, stats, readFName, options, RazerSMode()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 257 | dumpMatches(store, stats, readFileNames[0], options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 924 | assignValue(target_, value(source_)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' 150 | assign(*this, source_); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 924 | assignValue(target_, value(source_)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' 150 | assign(*this, source_); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:318:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' 924 | assignValue(target_, value(source_)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' 150 | assign(*this, source_); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' 924 | assignValue(target_, value(source_)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' 150 | assign(*this, source_); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:318:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 924 | assignValue(target_, value(source_)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' 150 | assign(*this, source_); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' 924 | assignValue(target_, value(source_)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' 150 | assign(*this, source_); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3354 | return _mapSingleReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3422 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3431 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3443 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3376 | return _mapReads(store, cnts, options, ungapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' 3351 | return _mapMatePairReadsParallel(store, cnts, options, shape, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' 3381 | return _mapReads(store, cnts, options, gapped, mode); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' 3396 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' 3452 | return _mapReads(store, cnts, options, RazerSMode()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' 235 | int error = _mapReads(store, stats, (RazerSCoreOptions&)options); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:26: required from here 866 | int result = mapReads(genomeFileNames, readFileNames, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:14: required from here 42 | if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:14: required from here 42 | if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 4%] Linking CXX executable ../../bin/rabema_evaluate cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:14: required from here 42 | if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:14: required from here 42 | if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target rabema_evaluate make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:14: required from here 42 | if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo, AlignedReadStoreElement, void>, unsigned int>; TSource = GraphCargo, AlignedReadStoreElement, void>, unsigned int>; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:702:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = String, AlignedReadStoreElement, void>, unsigned int>, Alloc<> >; TValue = GraphCargo, AlignedReadStoreElement, void>, unsigned int>; TPos = unsigned int]' 702 | assign(value(me, pos), _value); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/property_map_generic.h:186:16: required from 'typename seqan::EnableIf >, void>::Type seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String, AlignedReadStoreElement, void>, unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo, AlignedReadStoreElement, void>, unsigned int>; typename EnableIf >, void>::Type = void]' 186 | assignValue(pm, _getId(d), val); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rgraph_base.h:191:23: required from 'GraphCargo& registerRead(ReadGraph&, typename ReadGraph::TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = unsigned int; typename ReadGraph::TId = unsigned int]' 191 | assignProperty(me.vertexCargo, vd, new_cargo); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rgraph_construction.h:82:59: required from 'void construct(ReadGraph&, const seqan::String > >&, const seqan::FragmentStore&, TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int]' 82 | TGraphCargo & new_cargo = registerRead(me, _readId(value(colIter))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:217:14: required from here 217 | construct(rgraph, candidates, fragStore, options.contig); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned int>& GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned int>::operator=(const GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned int>&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rgraph.h:32, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep/rgraph_base.h:44:5: note: because 'GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned int>' has user-provided 'GraphCargo::GraphCargo(const GraphCargo&) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = unsigned int]' 44 | GraphCargo(GraphCargo const& other) | ^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::Segment >, seqan::PrefixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::Segment >, seqan::SuffixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::Segment >, seqan::PrefixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::Segment >, seqan::SuffixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 4%] Linking CXX executable ../../bin/razers3_simulate_reads cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target razers3_simulate_reads make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:337:23: required from here 337 | openRes = open(inFile, toCString(options.inFastxPath)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:337:23: required from here 337 | openRes = open(inFile, toCString(options.inFastxPath)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:337:23: required from here 337 | openRes = open(inFile, toCString(options.inFastxPath)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:347:23: required from here 347 | openRes = open(outFile, toCString(options.outPath)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:337:23: required from here 337 | openRes = open(inFile, toCString(options.inFastxPath)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:468:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' 468 | writeWrappedString(target, seq, lineLength); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' 423 | writeRecord(file.iter, meta, seq, qual, Tag(), context(file).options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 506 | writeRecord(file, meta, seq, qual, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' 519 | writeRecord(file, meta, seq, qual, file.format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:24: required from here 424 | writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment >, InfixSegment>; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:475:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' 475 | writeWrappedString(target, qual, lineLength); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' 423 | writeRecord(file.iter, meta, seq, qual, Tag(), context(file).options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 506 | writeRecord(file, meta, seq, qual, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' 519 | writeRecord(file, meta, seq, qual, file.format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:24: required from here 424 | writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:468:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' 468 | writeWrappedString(target, seq, lineLength); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' 423 | writeRecord(file.iter, meta, seq, qual, Tag(), context(file).options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 506 | writeRecord(file, meta, seq, qual, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' 519 | writeRecord(file, meta, seq, qual, file.format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:24: required from here 424 | writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment >, InfixSegment>; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:475:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' 475 | writeWrappedString(target, qual, lineLength); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' 423 | writeRecord(file.iter, meta, seq, qual, Tag(), context(file).options); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 506 | writeRecord(file, meta, seq, qual, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' 519 | writeRecord(file, meta, seq, qual, file.format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:24: required from here 424 | writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 4%] Linking CXX executable ../../bin/razers3_quality2prob cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target razers3_quality2prob make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/paramChooser.h:992:51, inlined from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/paramChooser.h:1285:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here 145 | SeqFileIn seqStream(toCString(options.readNameFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here 145 | SeqFileIn seqStream(toCString(options.readNameFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here 145 | SeqFileIn seqStream(toCString(options.readNameFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here 145 | SeqFileIn seqStream(toCString(options.readNameFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here 145 | SeqFileIn seqStream(toCString(options.readNameFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 4%] Linking CXX executable ../../bin/rep_sep cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target rep_sep make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 4%] Linking CXX executable ../../bin/razers cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target razers make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -MF CMakeFiles/s4_search.dir/search.cpp.o.d -o CMakeFiles/s4_search.dir/search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/parallel/base.h:36, from /usr/include/c++/14/parallel/algobase.h:40, from /usr/include/c++/14/parallel/algorithm:36, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:48: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 4%] Linking CXX executable ../../bin/sak cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target sak make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF CMakeFiles/s4_join.dir/join.cpp.o.d -o CMakeFiles/s4_join.dir/join.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/parallel/base.h:36, from /usr/include/c++/14/parallel/algobase.h:40, from /usr/include/c++/14/parallel/algorithm:36, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:48: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 282 | index(searcher); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:142: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 323 | prepare(searcher, query); | ~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 282 | index(searcher); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 323 | prepare(searcher, query); | ~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 405 | index(searcher); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 449 | prepare(searcher, queryLong); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 405 | index(searcher); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 449 | prepare(searcher, queryLong); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 810 | dbFinder.verifier(dbId, queryId, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:31: required from here 508 | return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 810 | dbFinder.verifier(dbId, queryId, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:31: required from here 536 | return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 810 | dbFinder.verifier(dbId, queryId, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:31: required from here 508 | return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 810 | dbFinder.verifier(dbId, queryId, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:31: required from here 536 | return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 355 | build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:319:37: required from here 319 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:142: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 279 | prepare(joiner, db); | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 355 | build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:332:37: required from here 332 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 279 | prepare(joiner, db); | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 355 | build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:357:37: required from here 357 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 279 | prepare(joiner, db); | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 355 | build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:370:37: required from here 370 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 344 | build(dbFinder.dbIndex, dbFinder.db, Default()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 264 | index(joiner); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' 374 | buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 279 | prepare(joiner, db); | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 791 | dbFinder.verifier(dbId1, dbId2, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:29: required from here 311 | return runJoiner(options, TDbDna(), Nothing(), Online()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 4%] Linking CXX executable ../../bin/sam2matrix cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' 132 | write(writer.outputIt, id1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' 197 | _writeRecord(writer, writer.db.ids[dbId], writer.db.ids[dbId]); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' 293 | close(writer); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:29: required from here 311 | return runJoiner(options, TDbDna(), Nothing(), Online()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 791 | dbFinder.verifier(dbId1, dbId2, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:29: required from here 349 | return runJoiner(options, TDbGeo(), Nothing(), Online()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target sam2matrix make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 611 | _find(finderExt, dbFinder, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 791 | dbFinder.verifier(dbId1, dbId2, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:29: required from here 311 | return runJoiner(options, TDbDna(), Nothing(), Online()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' 132 | write(writer.outputIt, id1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' 197 | _writeRecord(writer, writer.db.ids[dbId], writer.db.ids[dbId]); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' 293 | close(writer); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:29: required from here 311 | return runJoiner(options, TDbDna(), Nothing(), Online()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' 1515 | typename Iterator::Type seq1Iter = begin(seq1, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 136 | TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 791 | dbFinder.verifier(dbId1, dbId2, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:29: required from here 349 | return runJoiner(options, TDbGeo(), Nothing(), Online()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' 132 | write(writer.outputIt, id1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:150:17: required from 'void _write(Writer&, typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' 150 | _writeRecord(writer, writer.db.ids[dbId], writer.query.ids[queryId]); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:98:15: required from 'void Writer::operator()(typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' 98 | _write(*this, dbId, queryId); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:142:13: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 142 | delegate(dbId, queryId); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 810 | dbFinder.verifier(dbId, queryId, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:31: required from here 508 | return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:98:15: required from 'void Writer::operator()(typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' 98 | _write(*this, dbId, queryId); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:142:13: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 142 | delegate(dbId, queryId); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' 78 | return _verify(*this, dbId, queryId, delegate); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 810 | dbFinder.verifier(dbId, queryId, dbFinder.delegate); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:31: required from here 508 | return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:39: required from here 524 | return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:39: required from here 544 | return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' 456 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:39: required from here 552 | return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' 330 | execute(searcher); | ~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:39: required from here 516 | return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:41: required from here 336 | return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:41: required from here 361 | return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:41: required from here 374 | return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' 605 | TTextIterator textIt(dbFinder.dbIndex.index); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' 286 | execute(joiner); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:41: required from here 323 | return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:20: required from 'void seqan::buildAlignmentGraph(String&, Graph >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = unsigned int; TSpec = Tag; FrequencyCounting = const Tag]' 191 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:178:24: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score, Tag > >]' 178 | buildAlignmentGraph(matches, g, FrequencyCounting()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:281:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 281 | evaluateAlignment(msaOpt); | ~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here 305 | _initMsaParams(parser, sc); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 46 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 66 | _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 290 | customizedMsaAlignment(msaOpt); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here 305 | _initMsaParams(parser, sc); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 46 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 66 | _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 290 | customizedMsaAlignment(msaOpt); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here 305 | _initMsaParams(parser, sc); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 46 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 66 | _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 290 | customizedMsaAlignment(msaOpt); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here 305 | _initMsaParams(parser, sc); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 46 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 66 | _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 290 | customizedMsaAlignment(msaOpt); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here 305 | _initMsaParams(parser, sc); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' 46 | if (!open(inFile, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 66 | _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' 290 | customizedMsaAlignment(msaOpt); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here 305 | _initMsaParams(parser, sc); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 4%] Linking CXX executable ../../bin/samcat cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target samcat make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 4%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/unique_ptr.h:38, from /usr/include/c++/14/memory:78, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:145:27: required from here 145 | printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:116:14: required from here 116 | if (!open(seqFileOut, options.outputFileConsensus.c_str())) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:145:27: required from here 145 | printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:145:27: required from here 145 | printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:116:14: required from here 116 | if (!open(seqFileOut, options.outputFileConsensus.c_str())) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:145:27: required from here 145 | printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:145:27: required from here 145 | printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:116:14: required from here 116 | if (!open(seqFileOut, options.outputFileConsensus.c_str())) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:153:21: required from here 153 | writeRecords(out, store); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:223:14: required from here 223 | if (!open(seqFileIn, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:223: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:153:21: required from here 153 | writeRecords(out, store); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:223:14: required from here 223 | if (!open(seqFileIn, fileName)) | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:153:21: required from here 153 | writeRecords(out, store); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:153:21: required from here 153 | writeRecords(out, store); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 941 | finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:910:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 910 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:1006:37: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1006 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' 272 | buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:384:24: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 384 | buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:153:21: required from here 153 | writeRecords(out, store); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:261:20: required from here 261 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:261:20: required from here 261 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole<>; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:463:41: required from 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]' 463 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = const seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:296:23: required from here 296 | consensusAlignment(store, caOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:639:20: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, const TAlgoTag&) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig; TAlgoTag = Tag]' 639 | globalAlignment(profileGaps, readGaps, consScore, alignConfig, /*lowerBand, upperBand, */tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:314:20: required from here 314 | reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = StringSet > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_io.h:209:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = StringSet > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/paramChooser.h:993:51, inlined from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/paramChooser.h:1286:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/paramChooser.h:1011:66, inlined from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/paramChooser.h:1286:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/paramChooser.h:1021:53, inlined from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/paramChooser.h:1286:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 4%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_options.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_options.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_options.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_options.h:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 4%] Linking CXX executable ../../bin/s4_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target s4_search make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/sgip.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/sgip.cpp:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/sgip.cpp:27: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/sgip_base.h:33, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/sgip.cpp:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 4%] Linking CXX executable ../../bin/s4_join cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target s4_join make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp [ 4%] Linking CXX executable ../../bin/seqcons2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target seqcons2 make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:24: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:25: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:53: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:356:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 356 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:405:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 405 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:420:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 420 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:468:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 468 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:481:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 481 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:504:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 504 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:523:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 523 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:545:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 545 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:30, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:28: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_types.h:155:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 155 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_types.h:207:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 207 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:127:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 60 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | databaseID, databaseStrand, matches, BestLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 68 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | databaseID, databaseStrand, matches, BandedGlobalExtend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 60 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | databaseID, databaseStrand, matches, BestLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 68 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | databaseID, databaseStrand, matches, BandedGlobalExtend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 60 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | databaseID, databaseStrand, matches, BestLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 68 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | databaseID, databaseStrand, matches, BandedGlobalExtend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 60 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | databaseID, databaseStrand, matches, BestLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 68 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | databaseID, databaseStrand, matches, BandedGlobalExtend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 60 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | databaseID, databaseStrand, matches, BestLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 68 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | databaseID, databaseStrand, matches, BandedGlobalExtend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 60 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | databaseID, databaseStrand, matches, BestLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 68 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | databaseID, databaseStrand, matches, BandedGlobalExtend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 241 | if (!open(inSeqs, (toCString(fileName)))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 618 | if (!_importSequences(options.queryFile, "query", queries, queryIDs)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 241 | if (!open(inSeqs, (toCString(fileName)))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 618 | if (!_importSequences(options.queryFile, "query", queries, queryIDs)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:5148:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TGenome = String, Alloc<> >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]' 5148 | Pair(1,rInf))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:971:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 971 | if(!options.realign) dumpShortIndelPolymorphismsBatch(fragmentStore, readCigars, fragmentStore.contigStore[0].seq, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, indelFileStream, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/pair_base.h:120:53: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 120 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} | ^~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = unsigned int; TGenomeNames = seqan::StringSet > >]' 77 | if (!open(seqFileIn, toCString(fileNameList[filecount]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 670 | if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:4057:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]' 4057 | TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]' 2477 | dumpVariantsRealignBatch(fragStoreGroup,readCigars, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2478 | readCounts,genomeID, | ~~~~~~~~~~~~~~~~~~~~ 2479 | groupStartCoord,groupStartPos,groupEndPos, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2480 | fileSNPs,fileIndels,options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 986 | dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 241 | if (!open(inSeqs, (toCString(fileName)))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 618 | if (!_importSequences(options.queryFile, "query", queries, queryIDs)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 467 | integrateAlign(align, bandedAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = unsigned int; TGenomeNames = seqan::StringSet > >]' 77 | if (!open(seqFileIn, toCString(fileNameList[filecount]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 670 | if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 467 | integrateAlign(align, bandedAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 467 | integrateAlign(align, bandedAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = const Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:689:35: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >]' 689 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:669:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 669 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:451:22: required from 'bool seqan::isGap(const Gaps >&, TPosition) [with TSequence = String, Alloc<> >; TGapAnchors = String >; TPosition = int]' 451 | return isGap(iter(gaps, clippedViewPos)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:4418:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]' 4418 | ((indelConsens[candidateViewPos].i1 & 7) == 6 && isGap(referenceGaps, candidateViewPos-refStart))) // position in consensus is the same as in reference | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]' 2477 | dumpVariantsRealignBatch(fragStoreGroup,readCigars, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2478 | readCounts,genomeID, | ~~~~~~~~~~~~~~~~~~~~ 2479 | groupStartCoord,groupStartPos,groupEndPos, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2480 | fileSNPs,fileIndels,options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 986 | dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 467 | integrateAlign(align, bandedAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 467 | integrateAlign(align, bandedAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 467 | integrateAlign(align, bandedAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = unsigned int; TGenomeNames = seqan::StringSet > >]' 77 | if (!open(seqFileIn, toCString(fileNameList[filecount]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 670 | if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 241 | if (!open(inSeqs, (toCString(fileName)))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 618 | if (!_importSequences(options.queryFile, "query", queries, queryIDs)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:190: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = unsigned int; TGenomeNames = seqan::StringSet > >]' 77 | if (!open(seqFileIn, toCString(fileNameList[filecount]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 670 | if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = unsigned int; TGenomeNames = seqan::StringSet > >]' 77 | if (!open(seqFileIn, toCString(fileNameList[filecount]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' 670 | if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:28: required from here 1412 | int result = detectSNPs(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 241 | if (!open(inSeqs, (toCString(fileName)))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 618 | if (!_importSequences(options.queryFile, "query", queries, queryIDs)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Dependent > >, IndexQGram, Tag > >; TSource = Index >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>, InfixSegment>*; TParam = const Segment >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>, InfixSegment>; typename Value::Type = Segment >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>, InfixSegment>; TValue2 = Segment >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, InfixSegment>, Owner<> >&; TSource = Segment >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:685:24: required from here 685 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:687:24: required from here 687 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:689:24: required from here 689 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:691:24: required from here 691 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:693:24: required from here 693 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, InfixSegment>, Owner<> >&; TSource = Segment >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, InfixSegment>, Owner<> >&; TSource = Segment >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 56 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | databaseID, databaseStrand, matches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' 458 | globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' 64 | stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | options.disableThresh, options.compactThresh, options.numMatches, options.verbose, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | databaseID, databaseStrand, matches, BandedGlobal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' 174 | if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' 655 | if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:695:24: required from here 695 | mainWithOptions(options, String()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 5%] Linking CXX executable ../../bin/sgip cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 5%] Built target sgip make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 5%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tree_recon.cpp [ 5%] Linking CXX executable ../../bin/seqan_tcoffee cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 5%] Built target seqan_tcoffee make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 5%] Building CXX object tests/align/CMakeFiles/test_align.dir/test_align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align/CMakeFiles/test_align.dir/test_align.cpp.o -MF CMakeFiles/test_align.dir/test_align.cpp.o.d -o CMakeFiles/test_align.dir/test_align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tree_recon.cpp:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tree_recon.cpp:18: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:83: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_base.h: In instantiation of 'seqan::Iter > seqan::operator++(Iter >&, int) [with TGaps = Gaps, Alloc<> >, AnchorGaps<> >; TSpec = AnchorGaps<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:183:11: required from 'void testAlignGapsIteratorMovement(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 183 | it++; | ~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:1157:34: required from 'void SEQAN_TEST_test_align_gaps_iterator_anchor_movement() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1157 | testAlignGapsIteratorMovement(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:156:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_base.h:205:39: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 205 | Iter > ret = it; | ^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_base.h:207:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 207 | return ret; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_base.h: In instantiation of 'seqan::Iter > seqan::operator--(Iter >&, int) [with TGaps = Gaps, Alloc<> >, AnchorGaps<> >; TSpec = AnchorGaps<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:219:11: required from 'void testAlignGapsIteratorMovement(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 219 | it--; | ~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:1157:34: required from 'void SEQAN_TEST_test_align_gaps_iterator_anchor_movement() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1157 | testAlignGapsIteratorMovement(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:156:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_base.h:226:39: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 226 | Iter > ret = it; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_base.h:228:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 228 | return ret; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps<> >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:345:5: required from 'void testAlignGapsIteratorPointerArithmetic(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 345 | SEQAN_ASSERT(it1 + 3 == it2); | ~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:1171:43: required from 'void SEQAN_TEST_test_align_gaps_iterator_anchor_pointer_arithmetic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1171 | testAlignGapsIteratorPointerArithmetic(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:158:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator-(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps<> >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:346:5: required from 'void testAlignGapsIteratorPointerArithmetic(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 346 | SEQAN_ASSERT(it1 == it2 - 3); | ~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:1171:43: required from 'void SEQAN_TEST_test_align_gaps_iterator_anchor_pointer_arithmetic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1171 | testAlignGapsIteratorPointerArithmetic(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:158:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:760:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 760 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:762:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 762 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:189: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:748:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 748 | next_best_begin= _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,next_best_end), score_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:748:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 748 | next_best_begin= _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,next_best_end), score_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:177: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h: In instantiation of 'TScoreValue seqan::_globalAlignment(Gaps&, Gaps&, const Score&, const Hirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; Hirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:72:28: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score >&, const Hirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; Hirschberg = Tag]' 72 | return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:167:36: required from 'void SEQAN_TEST_test_align_global_alignment_hirschberg_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 167 | int score = globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:595:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 468 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:487:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 487 | finger2 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:489:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 489 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:518:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 518 | finger1 = begin(matrix_); | ~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:543:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 543 | it_ = finger1; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:183: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:95:28: required from 'int seqan::globalAlignment(Align&, const MyersHirschberg&) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; MyersHirschberg = Tag]' 95 | return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:205:36: required from 'void SEQAN_TEST_test_align_global_alignment_myers_hirschberg_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 205 | int score = globalAlignment(align, MyersHirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:599:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:104:28: required from 'int seqan::globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]' 104 | return _globalAlignment(gapsH, gapsV, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:231:36: required from 'void SEQAN_TEST_test_align_global_alignment_myers_hirschberg_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 231 | int score = globalAlignment(gapsH, gapsV, MyersHirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:600:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:167:28: required from 'int seqan::globalAlignmentScore(const String&, const String&, const MyersHirschberg&) [with TAlphabetH = SimpleType; TSpecH = Alloc<>; TAlphabetV = SimpleType; TSpecV = Alloc<>; MyersHirschberg = Tag]' 167 | return _globalAlignment(gapsH, gapsV, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:311:31: required from 'void SEQAN_TEST_test_align_global_alignment_score_myers_hirschberg() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 311 | res = globalAlignmentScore(strH, strV, MyersHirschberg()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:606:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps<> >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps<> >, GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps<> >; TSpec = GapsIterator >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps<> >, GapsIterator > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:835:5: required from 'void testAlignGapsIteratorInterfaceBegin(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 835 | SEQAN_ASSERT_EQ(*itS, 'A'); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:1682:40: required from 'void SEQAN_TEST_test_align_gaps_anchor_gaps_iterator_interface_begin() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1682 | testAlignGapsIteratorInterfaceBegin(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:111:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h: In instantiation of 'void seqan::goEnd(TIterator&, TContainer&) [with TIterator = Iter, Alloc<> > >, GapsIterator > >; TContainer = Gaps, Alloc<> > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:430:10: required from 'void seqan::goEnd(TIterator&) [with TIterator = Iter, Alloc<> > >, GapsIterator > >]' 430 | goEnd(it, container(it)); | ~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:274:14: required from 'void testAlignGapsIteratorMovement(const TGapsSpec&) [with TGapsSpec = seqan::Tag]' 274 | goEnd(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:1062:34: required from 'void SEQAN_TEST_test_align_gaps_iterator_array_movement() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1062 | testAlignGapsIteratorMovement(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:142:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:415:8: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 415 | it = end(container); | ~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> > >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h: In instantiation of 'void seqan::goBegin(TIterator&, TContainer&) [with TIterator = Iter, Alloc<> > >, GapsIterator > >; TContainer = Gaps, Alloc<> > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:403:12: required from 'void seqan::goBegin(TIterator&) [with TIterator = Iter, Alloc<> > >, GapsIterator > >]' 403 | goBegin(it, tmpContainer); | ~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:281:16: required from 'void testAlignGapsIteratorMovement(const TGapsSpec&) [with TGapsSpec = seqan::Tag]' 281 | goBegin(it); | ~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps_iterator.h:1062:34: required from 'void SEQAN_TEST_test_align_gaps_iterator_array_movement() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1062 | testAlignGapsIteratorMovement(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:142:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:387:8: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 387 | it = begin(container); | ~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> > >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:60: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h: In instantiation of 'bool _validateAlignment(const TAlignment&, const seqan::AlignConfig&, const TScore&, const seqan::Score >&) [with TAlignment = seqan::Align, seqan::Alloc<> > >; bool FreeTop = false; bool FreeLeft = false; bool FreeRight = false; bool FreeBottom = false; TACSpec = seqan::Tag; TScore = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:194:9: required from 'void testDynamicGapInterfaces(TAlign&, const TAlgorithm&, const TAlignConfig&, int, int) [with TAlign = seqan::Align, seqan::Alloc<> > >; TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig<>]' 194 | SEQAN_ASSERT(_validateAlignment(alignObj, alignConfig, score, scoreScheme)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:224:33: required from 'void testDynamicGapInterfaces(const TAlgorithm&, const TAlignConfig&, int, int) [with TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig<>]' 224 | testDynamicGapInterfaces(alignObj, algo, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:271:29: required from 'void SEQAN_TEST_test_alignment_algorithms_global_dynamic_cost() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 271 | testDynamicGapInterfaces(seqan::NeedlemanWunsch(), seqan::AlignConfig<>()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:494:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:109:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 109 | itH = begin(row(align, 0), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:125:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 125 | itV = begin(row(align, 1), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:141:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 141 | itH = end(row(align, 0), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:157:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 157 | itV = end(row(align, 1), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h: In instantiation of 'bool _validateAlignment(const TAlignment&, const seqan::AlignConfig&, const TScore&, const seqan::Score >&) [with TAlignment = seqan::Align, seqan::Alloc<> > >; bool FreeTop = false; bool FreeLeft = true; bool FreeRight = true; bool FreeBottom = false; TACSpec = seqan::Tag; TScore = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:194:9: required from 'void testDynamicGapInterfaces(TAlign&, const TAlgorithm&, const TAlignConfig&, int, int) [with TAlign = seqan::Align, seqan::Alloc<> > >; TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig]' 194 | SEQAN_ASSERT(_validateAlignment(alignObj, alignConfig, score, scoreScheme)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:224:33: required from 'void testDynamicGapInterfaces(const TAlgorithm&, const TAlignConfig&, int, int) [with TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig]' 224 | testDynamicGapInterfaces(alignObj, algo, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:272:29: required from 'void SEQAN_TEST_test_alignment_algorithms_global_dynamic_cost() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 272 | testDynamicGapInterfaces(seqan::NeedlemanWunsch(), seqan::AlignConfig()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:494:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:109:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 109 | itH = begin(row(align, 0), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:125:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 125 | itV = begin(row(align, 1), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:141:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 141 | itH = end(row(align, 0), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:157:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 157 | itV = end(row(align, 1), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h: In instantiation of 'bool _validateAlignment(const TAlignment&, const seqan::AlignConfig&, const TScore&, const seqan::Score >&) [with TAlignment = seqan::Align, seqan::Alloc<> > >; bool FreeTop = true; bool FreeLeft = false; bool FreeRight = false; bool FreeBottom = true; TACSpec = seqan::Tag; TScore = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:194:9: required from 'void testDynamicGapInterfaces(TAlign&, const TAlgorithm&, const TAlignConfig&, int, int) [with TAlign = seqan::Align, seqan::Alloc<> > >; TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig]' 194 | SEQAN_ASSERT(_validateAlignment(alignObj, alignConfig, score, scoreScheme)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:224:33: required from 'void testDynamicGapInterfaces(const TAlgorithm&, const TAlignConfig&, int, int) [with TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig]' 224 | testDynamicGapInterfaces(alignObj, algo, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:273:29: required from 'void SEQAN_TEST_test_alignment_algorithms_global_dynamic_cost() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 273 | testDynamicGapInterfaces(seqan::NeedlemanWunsch(), seqan::AlignConfig()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:494:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:109:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 109 | itH = begin(row(align, 0), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:125:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 125 | itV = begin(row(align, 1), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:141:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 141 | itH = end(row(align, 0), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:157:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 157 | itV = end(row(align, 1), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h: In instantiation of 'bool _validateAlignment(const TAlignment&, const seqan::AlignConfig&, const TScore&, const seqan::Score >&) [with TAlignment = seqan::Align, seqan::Alloc<> > >; bool FreeTop = true; bool FreeLeft = true; bool FreeRight = true; bool FreeBottom = true; TACSpec = seqan::Tag; TScore = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:194:9: required from 'void testDynamicGapInterfaces(TAlign&, const TAlgorithm&, const TAlignConfig&, int, int) [with TAlign = seqan::Align, seqan::Alloc<> > >; TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig]' 194 | SEQAN_ASSERT(_validateAlignment(alignObj, alignConfig, score, scoreScheme)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:224:33: required from 'void testDynamicGapInterfaces(const TAlgorithm&, const TAlignConfig&, int, int) [with TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig]' 224 | testDynamicGapInterfaces(alignObj, algo, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:274:29: required from 'void SEQAN_TEST_test_alignment_algorithms_global_dynamic_cost() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 274 | testDynamicGapInterfaces(seqan::NeedlemanWunsch(), seqan::AlignConfig()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:494:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:109:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 109 | itH = begin(row(align, 0), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:125:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 125 | itV = begin(row(align, 1), Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:141:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 141 | itH = end(row(align, 0), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:157:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 157 | itV = end(row(align, 1), Standard()) - 1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:395:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 395 | SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:395:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 395 | SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:748:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 748 | next_best_begin= _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,next_best_end), score_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:235:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 235 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:253:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 253 | finger2 = col_; //points to last column | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:255:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 255 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'typename seqan::Iterator, const seqan::Tag >::Type seqan::_smithWatermanTrace(Gaps&, Gaps&, typename LocalAlignmentFinder::TBoolMatrix&, Iter, CountingIteratorImpl_ > >, const Score&) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; unsigned int DIMENSION = 0; typename Iterator, const Tag >::Type = Iter, CountingIteratorImpl_ > >; typename LocalAlignmentFinder::TBoolMatrix = String]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:37: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:595:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 595 | it_ = source_; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'void seqan::_smithWatermanDeclump(LocalAlignmentFinder&, Gaps&, Gaps&, const Score&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:736:26: required from 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 736 | _smithWatermanDeclump(sw_finder, gapsH, gapsV, score_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:445:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 445 | finger1 = end_col; //points to last column | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:447:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 447 | finger0 = end_col; | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:235:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 235 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:253:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 253 | finger2 = col_; //points to last column | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:255:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 255 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'typename seqan::Iterator, const seqan::Tag >::Type seqan::_smithWatermanTrace(Gaps&, Gaps&, typename LocalAlignmentFinder::TBoolMatrix&, Iter, CountingIteratorImpl_ > >, const Score&) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; unsigned int DIMENSION = 0; typename Iterator, const Tag >::Type = Iter, CountingIteratorImpl_ > >; typename LocalAlignmentFinder::TBoolMatrix = String]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:37: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:595:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 595 | it_ = source_; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'void seqan::_smithWatermanDeclump(LocalAlignmentFinder&, Gaps&, Gaps&, const Score&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreSpec = ScoreMatrix, Blosum62_>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:736:26: required from 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 736 | _smithWatermanDeclump(sw_finder, gapsH, gapsV, score_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:445:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 445 | finger1 = end_col; //points to last column | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:447:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 447 | finger0 = end_col; | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:190: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local_banded.h:417:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_banded_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 417 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:575:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScore = Score, Blosum62_> >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScore = Score, Blosum62_> >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local_banded.h:521:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_banded_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 521 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:575:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h: In instantiation of 'TScoreValue seqan::_globalAlignment(Gaps&, Gaps&, const Score&, const Hirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; Hirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:72:28: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score >&, const Hirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; Hirschberg = Tag]' 72 | return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:83:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score >&, const Hirschberg&) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TScoreValue = int; Hirschberg = Tag]' 83 | return globalAlignment(row(align, 0), row(align, 1), scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:139:36: required from 'void SEQAN_TEST_test_align_global_alignment_hirschberg_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 139 | int score = globalAlignment(align, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:594:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 468 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:487:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 487 | finger2 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:489:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 489 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:518:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 518 | finger1 = begin(matrix_); | ~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:543:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 543 | it_ = finger1; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:199:32: required from 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]' 199 | return _globalAlignment(gapsV, gapsH, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:104:28: required from 'int seqan::globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]' 104 | return _globalAlignment(gapsH, gapsV, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:231:36: required from 'void SEQAN_TEST_test_align_global_alignment_myers_hirschberg_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 231 | int score = globalAlignment(gapsH, gapsV, MyersHirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:600:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h: In instantiation of 'TScoreValue seqan::_globalAlignment(Gaps&, Gaps&, const Score&, const Hirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; Hirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:72:28: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score >&, const Hirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; Hirschberg = Tag]' 72 | return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:142:27: required from 'TScoreValue seqan::globalAlignmentScore(const String&, const String&, const Score >&, const Hirschberg&) [with TAlphabetH = SimpleType; TSpecH = Alloc<>; TAlphabetV = SimpleType; TSpecV = Alloc<>; TScoreValue = int; Hirschberg = Tag]' 142 | return globalAlignment(gapsH, gapsV, scoringScheme, algorithmTag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:270:31: required from 'void SEQAN_TEST_test_align_global_alignment_score_hirschberg() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 270 | res = globalAlignmentScore(strH, strV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:604:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 468 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:487:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 487 | finger2 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:489:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 489 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:518:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 518 | finger1 = begin(matrix_); | ~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:543:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 543 | it_ = finger1; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:199:32: required from 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]' 199 | return _globalAlignment(gapsV, gapsH, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:167:28: required from 'int seqan::globalAlignmentScore(const String&, const String&, const MyersHirschberg&) [with TAlphabetH = SimpleType; TSpecH = Alloc<>; TAlphabetV = SimpleType; TSpecV = Alloc<>; MyersHirschberg = Tag]' 167 | return _globalAlignment(gapsH, gapsV, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:311:31: required from 'void SEQAN_TEST_test_align_global_alignment_score_myers_hirschberg() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 311 | res = globalAlignmentScore(strH, strV, MyersHirschberg()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:606:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:167:28: required from 'int seqan::globalAlignmentScore(const String&, const String&, const MyersHirschberg&) [with TAlphabetH = SimpleType; TSpecH = Alloc<>; TAlphabetV = SimpleType; TSpecV = Alloc<>; MyersHirschberg = Tag]' 167 | return _globalAlignment(gapsH, gapsV, algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:175:32: required from 'int seqan::globalAlignmentScore(const StringSet&, const MyersHirschberg&) [with TString = String, Alloc<> >; TSpec = Owner<>; MyersHirschberg = Tag]' 175 | return globalAlignmentScore(strings[0], strings[1], algorithmTag); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:314:31: required from 'void SEQAN_TEST_test_align_global_alignment_score_myers_hirschberg() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 314 | res = globalAlignmentScore(strings, MyersHirschberg()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:606:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:294:57: required from 'typename seqan::Reference >::Type seqan::value(Gaps&, TPosition) [with TSequence = String, Alloc<> >; TSpec = AnchorGaps<>; TPosition = int; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps<> >, GapsIterator > > > >]' 294 | return typename Reference >::Type(begin(gaps, Standard()) + clippedViewPos); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:226:21: required from 'typename seqan::Reference > >::Type seqan::Gaps >::operator[](TPosition_) [with TSource = seqan::String, seqan::Alloc<> >; TGapAnchors = seqan::String >; typename seqan::Reference > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > > > >; TPosition_ = int]' 226 | return value(*this, clippedViewPos); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:205:9: required from 'void testAlignGapsGapOperationsGapCenter(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 205 | SEQAN_ASSERT(gaps[3] == 'C'); | ~~~~^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:1633:40: required from 'void SEQAN_TEST_test_align_gaps_anchor_gaps_gap_operations_gaps_center() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1633 | testAlignGapsGapOperationsGapCenter(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:104:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = const Gaps, Alloc<> >, AnchorGaps<> >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:689:35: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps<> >; TPos = int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps<> >, GapsIterator > >]' 689 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:475:28: required from 'bool seqan::isCharacter(const Gaps&, TPos) [with TSequence = String, Alloc<> >; TSpec = AnchorGaps<>; TPos = int]' 475 | return isCharacter(iter(gaps, clippedViewPos, Standard())); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:214:9: required from 'void testAlignGapsGapOperationsGapCenter(const TGapsSpec&) [with TGapsSpec = seqan::AnchorGaps<>]' 214 | SEQAN_ASSERT(isCharacter(gaps, 3)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:1633:40: required from 'void SEQAN_TEST_test_align_gaps_anchor_gaps_gap_operations_gaps_center() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1633 | testAlignGapsGapOperationsGapCenter(TTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:104:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps<> >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps >, AnchorGaps<> >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps<> >, GapsIterator > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps<> >; TPos = int; typename Iterator::Type>::Type = Iter >, AnchorGaps<> >, GapsIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String >; TPosition = int; TCount = int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_gaps.h:1795:15: required from 'void SEQAN_TEST_test_align_gaps_anchor_gaps_clear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1795 | insertGaps(gaps, 1, 2); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:127:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >::Iter(const seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:395:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 395 | SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:235:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 235 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:253:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 253 | finger2 = col_; //points to last column | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:255:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 255 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'typename seqan::Iterator, const seqan::Tag >::Type seqan::_smithWatermanTrace(Gaps&, Gaps&, typename LocalAlignmentFinder::TBoolMatrix&, Iter, CountingIteratorImpl_ > >, const Score&) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; unsigned int DIMENSION = 0; typename Iterator, const Tag >::Type = Iter, CountingIteratorImpl_ > >; typename LocalAlignmentFinder::TBoolMatrix = String]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:37: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:395:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 395 | SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:595:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 595 | it_ = source_; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'void seqan::_smithWatermanDeclump(LocalAlignmentFinder&, Gaps&, Gaps&, const Score&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:736:26: required from 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 736 | _smithWatermanDeclump(sw_finder, gapsH, gapsV, score_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:395:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 395 | SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:445:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 445 | finger1 = end_col; //points to last column | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:447:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 447 | finger0 = end_col; | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:217:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 217 | TStringIteratorV y_begin = begin(strV) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:220:22: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 220 | TStringIteratorH x = x_end; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:220:22: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 220 | TStringIteratorH x = x_end; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local_banded.h:304:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_banded_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 304 | SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:574:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h: In instantiation of 'TScoreValue seqan::_globalAlignment(Gaps&, Gaps&, const Score&, const Hirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; Hirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:72:28: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score >&, const Hirschberg&) [with TSequenceH = const String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = const String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; Hirschberg = Tag]' 72 | return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:142:27: required from 'TScoreValue seqan::globalAlignmentScore(const String&, const String&, const Score >&, const Hirschberg&) [with TAlphabetH = SimpleType; TSpecH = Alloc<>; TAlphabetV = SimpleType; TSpecV = Alloc<>; TScoreValue = int; Hirschberg = Tag]' 142 | return globalAlignment(gapsH, gapsV, scoringScheme, algorithmTag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:152:32: required from 'TScoreValue seqan::globalAlignmentScore(const StringSet&, const Score&, const Hirschberg&) [with TString = String, Alloc<> >; TSpec = Owner<>; TScoreValue = int; TScoreSpec = Tag; Hirschberg = Tag]' 152 | return globalAlignmentScore(strings[0], strings[1], scoringScheme, algorithmTag); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_global_alignment_specialized.h:274:31: required from 'void SEQAN_TEST_test_align_global_alignment_score_hirschberg() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 274 | res = globalAlignmentScore(strings, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:604:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 468 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:487:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 487 | finger2 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:489:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 489 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:518:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 518 | finger1 = begin(matrix_); | ~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:543:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 543 | it_ = finger1; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, PrefixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 258 | TScoreValue res = _setUpAndRunAlignment(traceSegments, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2654:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2654 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:37: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:216:33: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 216 | TStringIteratorH x_end = end(strH) - 1; | ~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:217:37: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 217 | TStringIteratorV y_begin = begin(strV) - 1; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:217:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 217 | TStringIteratorV y_begin = begin(strV) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:218:33: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 218 | TStringIteratorV y_end = end(strV) - 1; | ~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:515:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 515 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:37: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:216:33: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 216 | TStringIteratorH x_end = end(strH) - 1; | ~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_local.h:627:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 627 | SEQAN_ASSERT(nextLocalAlignment(gapsH, gapsV, enumerator)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:501:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, PrefixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global_banded.h:1979:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_banded_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1979 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), -3, 2, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:556:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global_banded.h:1979:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_banded_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1979 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), -3, 2, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:556:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global_banded.h:2007:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_banded_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2007 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), -3, 2, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:556:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:525:40: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 525 | TConstSeqHIterator seqHIter = begin(seqH, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 258 | TScoreValue res = _setUpAndRunAlignment(traceSegments, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2654:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2654 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 258 | TScoreValue res = _setUpAndRunAlignment(traceSegments, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2654:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2654 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 258 | TScoreValue res = _setUpAndRunAlignment(traceSegments, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2682:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2682 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 258 | TScoreValue res = _setUpAndRunAlignment(traceSegments, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2682:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2682 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:993:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag]' 993 | TConstSeqVIterator itV = begin(seqV, Rooted()) + _max(0, _min(seqVlength - 1, -lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:612:32: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 612 | _computeHammingDistance(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoringScheme, band, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | dpProfile); | ~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global_banded.h:2007:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_banded_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2007 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), -3, 2, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:556:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag, TracebackOn, Tag > > >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 891 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 | sequenceEntryForScore(scoringScheme, seqH, position(seqHIter)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 | seqVBegin, seqVEnd, scoringScheme, cacheDiag, cacheVert, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global_banded.h:2007:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_banded_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2007 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), -3, 2, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:556:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>]' 427 | value(gaps._source) = source; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_alignment_operations.h:69:21: required from 'void SEQAN_TEST_test_align_integrate_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 69 | assignSource(row(alignInf, 0), infix(seqH, 0, 8)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:613:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, PrefixSegment>*; TParam = const Segment, Alloc<> >, PrefixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, PrefixSegment>, Tag >; TValue = Segment, Alloc<> >, PrefixSegment>; typename Value::Type = Segment, Alloc<> >, PrefixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, PrefixSegment>; TValue2 = Segment, Alloc<> >, PrefixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, PrefixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, PrefixSegment>; typename Reference > >::Type = Segment, Alloc<> >, PrefixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, PrefixSegment>]' 269 | _setLength(gaps, length(value(gaps._source))); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:155:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 155 | _reinitArrayGaps(*this); | ~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2648:61: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2648 | Gaps, ArrayGaps> gapsH(prefixSegment); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, PrefixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 258 | TScoreValue res = _setUpAndRunAlignment(traceSegments, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2654:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2654 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, SuffixSegment>*; TParam = const Segment, Alloc<> >, SuffixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, SuffixSegment>, Tag >; TValue = Segment, Alloc<> >, SuffixSegment>; typename Value::Type = Segment, Alloc<> >, SuffixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, SuffixSegment>; TValue2 = Segment, Alloc<> >, SuffixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, SuffixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, SuffixSegment>; typename Reference > >::Type = Segment, Alloc<> >, SuffixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, SuffixSegment>]' 269 | _setLength(gaps, length(value(gaps._source))); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:155:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 155 | _reinitArrayGaps(*this); | ~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2678:61: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2678 | Gaps, ArrayGaps> gapsV(suffixSegment); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, PrefixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, PrefixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global_banded.h:2007:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_banded_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2007 | int score = globalAlignment(gapsH, gapsV, scoringScheme, AlignConfig<>(), -3, 2, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:556:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void readPhylipMatrix(TMat&, TNames&, TForwardIter&) [with TMat = seqan::String; TNames = seqan::String > >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tree_recon.cpp:54:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void readPhylipMatrix(TMat&, TNames&, TForwardIter&) [with TMat = seqan::String; TNames = seqan::String > >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 6%] Linking CXX executable ../../bin/tree_recon cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target tree_recon make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -MF CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:277:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 91 | testAlignSimd(::impl::test_align_simd::GlobalAlignTester_(), dynScore, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:80:1: required from here 80 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Dynamic_Score_Matrix_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 74 | testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1, -3), | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:68:1: required from here 68 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Affine_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ [ 6%] Linking CXX executable ../../bin/snp_store cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target snp_store make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -MF CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o.d -o CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_variable_length.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_variable_length.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_variable_length.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_variable_length.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 91 | testAlignSimd(::impl::test_align_simd::GlobalAlignTester_(), dynScore, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:80:1: required from here 80 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Dynamic_Score_Matrix_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 74 | testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1, -3), | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:68:1: required from here 68 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Affine_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ [ 6%] Linking CXX executable ../../bin/razers3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target razers3 make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -MF CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 91 | testAlignSimd(::impl::test_align_simd::LocalAlignTester_(), dynScore, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:80:1: required from here 80 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Dynamic_Score_Matrix_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 74 | testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1, -3), | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:68:1: required from here 68 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Affine_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ [ 6%] Linking CXX executable ../../bin/stellar cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target stellar make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -MF CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o.d -o CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 91 | testAlignSimd(::impl::test_align_simd::LocalAlignTester_(), dynScore, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:80:1: required from here 80 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Dynamic_Score_Matrix_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, Tag >*; TParam = Align, Alloc<> >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Align, Alloc<> >, Tag >*; TSource1 = Align, Alloc<> >, Tag >*; TSource2 = Align, Alloc<> >, Tag >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Align, Alloc<> >, Tag >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Align, Alloc<> >, Tag >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Align, Alloc<> >, Tag >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Align, Alloc<> >, Tag >; TSpec = Owner<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1301 | return resize(me.strings, new_size, tag); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = StringSet, Alloc<> >, Tag >, Owner<> >&; TSize = unsigned int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' 166 | resize(alignments, length(std::get<0>(sets))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' 216 | testAlignSimd(TFunctor(), score, config, TSimdLength()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' 74 | testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1, -3), | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 | TAlignConf(), TLengthParam(), TBandSwitch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:68:1: required from here 68 | SEQAN_TYPED_TEST(SimdAlignTestCommon, Affine_Align) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ [ 6%] Linking CXX executable ../../bin/test_align_simd_local_equal_length cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target test_align_simd_local_equal_length make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object tests/align_extend/CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align_extend/CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -MF CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o.d -o CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h: In instantiation of 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:558:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 558 | TAlign align(alignOrig); | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:586:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 586 | TAlign align(alignOrig); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:620:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 620 | TAlign align(alignOrig); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 519 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, False(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 | False()); | ~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 66 | score, | ~~~~~~ 67 | s1, | ~~~ 68 | s2, | ~~~ 69 | positions, | ~~~~~~~~~~ 70 | EXTEND_BOTH, | ~~~~~~~~~~~~ 71 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 434 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 519 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, False(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 | False()); | ~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 66 | score, | ~~~~~~ 67 | s1, | ~~~ 68 | s2, | ~~~ 69 | positions, | ~~~~~~~~~~ 70 | EXTEND_BOTH, | ~~~~~~~~~~~~ 71 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = Segment >, InfixSegment>; TString1 = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:504:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 504 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 | False(), False()); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:178:36: required from 'void SEQAN_TEST_test_align_extend_simple_infixes_recomp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 178 | int score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 179 | value(set,1), | ~~~~~~~~~~~~~ 180 | value(set,2), | ~~~~~~~~~~~~~ 181 | positions, | ~~~~~~~~~~ 182 | EXTEND_BOTH, | ~~~~~~~~~~~~ 183 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = Segment >, InfixSegment>; TString1 = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 434 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:504:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = Segment >, InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 504 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 | False(), False()); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:178:36: required from 'void SEQAN_TEST_test_align_extend_simple_infixes_recomp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 178 | int score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 179 | value(set,1), | ~~~~~~~~~~~~~ 180 | value(set,2), | ~~~~~~~~~~~~~ 181 | positions, | ~~~~~~~~~~ 182 | EXTEND_BOTH, | ~~~~~~~~~~~~ 183 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 536 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 | 0, scoreScheme, True(), False()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 287 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 288 | s1, | ~~~ 289 | s2, | ~~~ 290 | positions, | ~~~~~~~~~~ 291 | EXTEND_BOTH, | ~~~~~~~~~~~~ 292 | -1, | ~~~ 293 | +1, | ~~~ 294 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False]' 434 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 536 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 | 0, scoreScheme, True(), False()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 287 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 288 | s1, | ~~~ 289 | s2, | ~~~ 290 | positions, | ~~~~~~~~~~ 291 | EXTEND_BOTH, | ~~~~~~~~~~~~ 292 | -1, | ~~~ 293 | +1, | ~~~ 294 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:569:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 569 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, 0, 0, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 | scoreScheme, False(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:415:24: required from 'void SEQAN_TEST_test_align_extend_xdrop() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 415 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 416 | s1, | ~~~ 417 | s2, | ~~~ 418 | positions, | ~~~~~~~~~~ 419 | EXTEND_BOTH, | ~~~~~~~~~~~~ 420 | 3, | ~~ 421 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = True]' 434 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:569:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 569 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, 0, 0, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 | scoreScheme, False(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:415:24: required from 'void SEQAN_TEST_test_align_extend_xdrop() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 415 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 416 | s1, | ~~~ 417 | s2, | ~~~ 418 | positions, | ~~~~~~~~~~ 419 | EXTEND_BOTH, | ~~~~~~~~~~~~ 420 | 3, | ~~ 421 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:603:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 603 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 | xDrop, scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:514:24: required from 'void SEQAN_TEST_test_align_extend_xdrop_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 514 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 515 | s1, | ~~~ 516 | s2, | ~~~ 517 | positions, | ~~~~~~~~~~ 518 | EXTEND_BOTH, | ~~~~~~~~~~~~ 519 | -2, | ~~~ 520 | +2, | ~~~ 521 | 4, | ~~ 522 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 434 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:603:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 603 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 | xDrop, scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:514:24: required from 'void SEQAN_TEST_test_align_extend_xdrop_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 514 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 515 | s1, | ~~~ 516 | s2, | ~~~ 517 | positions, | ~~~~~~~~~~ 518 | EXTEND_BOTH, | ~~~~~~~~~~~~ 519 | -2, | ~~~ 520 | +2, | ~~~ 521 | 4, | ~~ 522 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 519 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, False(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 | False()); | ~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 66 | score, | ~~~~~~ 67 | s1, | ~~~ 68 | s2, | ~~~ 69 | positions, | ~~~~~~~~~~ 70 | EXTEND_BOTH, | ~~~~~~~~~~~~ 71 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment >, InfixSegment>; typename Reference > >::Type = Segment >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment >, InfixSegment>; TSequence2 = Segment >, InfixSegment>]' 427 | value(gaps._source) = source; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:59:21: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 59 | assignSource(row(align, 0), infix(s1, 19, 23)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 554 | globalAlignment(alignOrig, sc, AlignConfig()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 554 | globalAlignment(alignOrig, sc, AlignConfig()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 554 | globalAlignment(alignOrig, sc, AlignConfig()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_<>; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_<>; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const False&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = ModifiedString >, InfixSegment>, Tag >; TString1 = ModifiedString >, InfixSegment>, Tag >; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 157 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 536 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 | 0, scoreScheme, True(), False()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 287 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 288 | s1, | ~~~ 289 | s2, | ~~~ 290 | positions, | ~~~~~~~~~~ 291 | EXTEND_BOTH, | ~~~~~~~~~~~~ 292 | -1, | ~~~ 293 | +1, | ~~~ 294 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_<>; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_<>; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const False&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = Segment >, InfixSegment>; TString1 = Segment >, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 157 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:351:43: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 351 | rightScore = _setUpAndRunAlignImpl(alignContext, inf0, inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 536 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 | 0, scoreScheme, True(), False()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 287 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 288 | s1, | ~~~ 289 | s2, | ~~~ 290 | positions, | ~~~~~~~~~~ 291 | EXTEND_BOTH, | ~~~~~~~~~~~~ 292 | -1, | ~~~ 293 | +1, | ~~~ 294 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter >, InfixSegment>, AdaptorIterator > >; TSpec = Tag; typename Container >::Type = ModifiedString >, InfixSegment>, Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:397:81: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, Tag >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag, TracebackOn<>, Tag >]' 397 | tmpSeqH, sequenceEntryForScore(scoringScheme, container(iter), position(iter)), | ~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_<>; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 891 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 | sequenceEntryForScore(scoringScheme, seqH, position(seqHIter)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 | seqVBegin, seqVEnd, scoringScheme, cacheDiag, cacheVert, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_<>; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const False&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = ModifiedString >, InfixSegment>, Tag >; TString1 = ModifiedString >, InfixSegment>, Tag >; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 157 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 536 | return _extendAlignmentImpl(align, std::numeric_limits::min(), hSeq, vSeq, positions, direction, lowerDiag, upperDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 | 0, scoreScheme, True(), False()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 287 | extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 288 | s1, | ~~~ 289 | s2, | ~~~ 290 | positions, | ~~~~~~~~~~ 291 | EXTEND_BOTH, | ~~~~~~~~~~~~ 292 | -1, | ~~~ 293 | +1, | ~~~ 294 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_<>; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_<>; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 519 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, False(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 | False()); | ~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 66 | score, | ~~~~~~ 67 | s1, | ~~~ 68 | s2, | ~~~ 69 | positions, | ~~~~~~~~~~ 70 | EXTEND_BOTH, | ~~~~~~~~~~~~ 71 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_<>; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_<>; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = False; TBoolXDrop = False]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 519 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, 0, 0, 0, scoreScheme, False(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 | False()); | ~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | score = extendAlignment(align, | ~~~~~~~~~~~~~~~^~~~~~~ 66 | score, | ~~~~~~ 67 | s1, | ~~~ 68 | s2, | ~~~ 69 | positions, | ~~~~~~~~~~ 70 | EXTEND_BOTH, | ~~~~~~~~~~~~ 71 | sc); | ~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 6%] Linking CXX executable ../../bin/test_align_simd_global_equal_length cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target test_align_simd_global_equal_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -MF CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o.d -o CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_data_structures.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_parallel.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_wavefront_task_scheduler.h:35, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_data_structures.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_data_structures.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 7%] Linking CXX executable ../../bin/test_align_parallel_data_structures cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_data_structures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -o ../../bin/test_align_parallel_data_structures -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 7%] Built target test_align_parallel_data_structures make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -MF CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o.d -o CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_algorithm.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_parallel.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_wavefront_alignment.h:35, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_algorithm.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_algorithm.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Linking CXX executable ../../bin/test_align_simd_local_variable_length cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_simd_local_variable_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -MF CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o.d -o CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_parallel.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.h:37, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Linking CXX executable ../../bin/test_align_simd_global_variable_length cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_simd_global_variable_length make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/align_profile/CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align_profile/CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o -MF CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o.d -o CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp [ 8%] Linking CXX executable ../../bin/test_align_extend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_extend.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -o ../../bin/test_align_extend -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_extend make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/align_split/CMakeFiles/test_align_split.dir/test_align_split.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/align_split/CMakeFiles/test_align_split.dir/test_align_split.cpp.o -MF CMakeFiles/test_align_split.dir/test_align_split.cpp.o.d -o CMakeFiles/test_align_split.dir/test_align_split.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split/test_align_split.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split/test_align_split.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split/test_align_split.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Linking CXX executable ../../bin/test_align_parallel_algorithm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_parallel_algorithm make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/alignment_free/CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/alignment_free/CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o -MF CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o.d -o CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free/test_alignment_free.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_split.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split/test_align_split.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split/test_align_split.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile/add_to_profile.h: In instantiation of 'void seqan::addToProfile(String >&, String&, int, int) [with TChar = SimpleType; TValue = int; TSpec = void; TSpec2 = Alloc<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp:145:17: required from 'void SEQAN_TEST_test_align_profile_add_to_profile() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 145 | addToProfile(profile, seq); | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp:353:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile/add_to_profile.h:130:9: warning: implicitly-declared 'constexpr seqan::Iter, int> > >, seqan::GapsIterator > >& seqan::Iter, int> > >, seqan::GapsIterator > >::operator=(const seqan::Iter, int> > >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 130 | itH = begin(gapsH, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, int> > >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, int> > >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free/test_alignment_free.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free/test_alignment_free.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free/test_alignment_free.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 159 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: note: remove the '< >' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 333 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: note: remove the '< >' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/af_n2.h: In instantiation of 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_comparison.h:101:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' 101 | _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free/test_alignment_free.cpp:304:28: required from 'void SEQAN_TEST_test_alignment_free_n2_dna5() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 304 | alignmentFreeComparison(myMatrix, sequences, myScoreN2); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free/test_alignment_free.cpp:509:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/af_n2.h:189:64: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 189 | itStandardisedKmerCounts = begin(standardisedKmerCounts); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >]' 105 | Iter(Iter const & other_) : | ^~~~ [ 8%] Linking CXX executable ../../bin/test_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align.dir/test_align.cpp.o -o ../../bin/test_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/arg_parse/CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/arg_parse/CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -MF CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o.d -o CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.h: In instantiation of 'void seqan::SEQAN_TEST_test_string_list() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.cpp:79:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.h:513:38: warning: possibly dangling reference to a temporary [-Wdangling-reference] 513 | std::vector const & values = getOptionValues(parser, "string"); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.h:513:62: note: the temporary was destroyed at the end of the full expression 'seqan::getOptionValues(parser, std::__cxx11::basic_string(((const char*)"string"), std::allocator()))' 513 | std::vector const & values = getOptionValues(parser, "string"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ [ 8%] Linking CXX executable ../../bin/test_align_profile cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_profile.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o -o ../../bin/test_align_profile -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_profile make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -MF CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o.d -o CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse_version_check.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse_version_check.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse_version_check.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 8%] Linking CXX executable ../../bin/test_alignment_free cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o -o ../../bin/test_alignment_free -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_alignment_free make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/bam_io/CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/bam_io/CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -MF CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o.d -o CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_alignment_record.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io_context.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::String >; T2 = seqan::Segment >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::String >; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_tags_dict.h:75:9: required from 'void SEQAN_TEST_test_bam_tags_dict_get_type() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:117:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::String >; T2 = seqan::Segment >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::String >; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_tags_dict.h:75:9: required from 'void SEQAN_TEST_test_bam_tags_dict_get_type() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:117:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_arg_parse_ctd_support() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]', inlined from 'seqan::String seqan::_getNumbersFromString(const std::string&)' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'seqan::String seqan::_getNumbersFromString(const std::string&)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 8%] Linking CXX executable ../../bin/test_align_split cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_split.dir/link.txt --verbose=1 [ 8%] Linking CXX executable ../../bin/test_align_parallel_interface cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_split.dir/test_align_split.cpp.o -o ../../bin/test_align_split -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_split make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_parallel_interface make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -MF CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o.d -o CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_metaprogramming.cpp [ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -MF CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o.d -o CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_exception.cpp [ 8%] Linking CXX executable ../../bin/test_basic_exception cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_exception.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -o ../../bin/test_basic_exception -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_basic_exception make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -MF CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o.d -o CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_fundamental.cpp [ 8%] Linking CXX executable ../../bin/test_basic_metaprogramming cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_metaprogramming.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -o ../../bin/test_basic_metaprogramming -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_basic_metaprogramming make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -MF CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o.d -o CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_concept.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_concept.h:65, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:68, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_concept.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h: In instantiation of 'seqan::CopyConstructible::~CopyConstructible() [with T = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:196:18: required from 'seqan::usage_requirements::~usage_requirements() [with Model = seqan::CopyConstructible >, seqan::InfixSegment> >]' 196 | p->~Model(); | ~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:302:18: required from 'static void seqan::requirement::failed() [with Model = seqan::usage_requirements >, seqan::InfixSegment> > >]' 302 | p->~Model(); | ~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h:285:5: required from 'struct seqan::CopyConstructible >, seqan::InfixSegment> >' 326 | &seqan::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/container_concept.h:286:8: required from 'struct seqan::ContainerConcept >, seqan::InfixSegment> >' 286 | struct ContainerConcept : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:255:62: required by substitution of 'template seqan::detail::yes seqan::detail::has_constraints_(Model*, wrap_constraints*) [with Model = seqan::ContainerConcept >, seqan::InfixSegment> >]' 255 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:264:51: required from 'struct seqan::not_satisfied >, seqan::InfixSegment> > >' 264 | enum {value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) }; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:317:8: required from 'struct seqan::requirement_ >, seqan::InfixSegment> >)>' 317 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_fundamental_concepts.h:179:5: required from here 326 | &seqan::requirement_::failed> \ | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h:287:11: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 287 | T a(b); // require copy constructor | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_concept.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h: In instantiation of 'void seqan::CopyConstructible::constConstraints(const T&) [with T = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h:289:9: required from 'seqan::CopyConstructible::~CopyConstructible() [with T = seqan::Segment >, seqan::InfixSegment>]' 289 | constConstraints(a); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:196:18: required from 'seqan::usage_requirements::~usage_requirements() [with Model = seqan::CopyConstructible >, seqan::InfixSegment> >]' 196 | p->~Model(); | ~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:302:18: required from 'static void seqan::requirement::failed() [with Model = seqan::usage_requirements >, seqan::InfixSegment> > >]' 302 | p->~Model(); | ~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h:285:5: required from 'struct seqan::CopyConstructible >, seqan::InfixSegment> >' 326 | &seqan::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/container_concept.h:286:8: required from 'struct seqan::ContainerConcept >, seqan::InfixSegment> >' 286 | struct ContainerConcept : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:255:62: required by substitution of 'template seqan::detail::yes seqan::detail::has_constraints_(Model*, wrap_constraints*) [with Model = seqan::ContainerConcept >, seqan::InfixSegment> >]' 255 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:264:51: required from 'struct seqan::not_satisfied >, seqan::InfixSegment> > >' 264 | enum {value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) }; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/concept_checking.h:317:8: required from 'struct seqan::requirement_ >, seqan::InfixSegment> >)>' 317 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_fundamental_concepts.h:179:5: required from here 326 | &seqan::requirement_::failed> \ | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_concepts.h:295:11: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | T c(a); // require const copy constructor | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 8%] Linking CXX executable ../../bin/test_basic_concept cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_concept.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -o ../../bin/test_basic_concept -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_basic_concept make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake "--color=" [ 9%] Linking CXX executable ../../bin/test_basic_fundamental cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_fundamental.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -o ../../bin/test_basic_fundamental -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -MF CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o.d -o CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_alphabet.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_basic_fundamental make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -MF CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o.d -o CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Triple >; TSource = Triple >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.h:946:15: required from 'void SEQAN_TEST_test_basic_aggregates_triple_base_assign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 946 | assign(t1, t2); | ~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp:97:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'constexpr seqan::Triple >& seqan::Triple >::operator=(const seqan::Triple >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = int; T2 = int; T3 = int]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 9%] Linking CXX executable ../../bin/test_arg_parse_version_check cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse_version_check.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -o ../../bin/test_arg_parse_version_check -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_arg_parse_version_check make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -MF CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o.d -o CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_allocator.cpp [ 9%] Linking CXX executable ../../bin/test_arg_parse cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -o ../../bin/test_arg_parse -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_arg_parse make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -MF CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o.d -o CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_parallelism.cpp [ 9%] Linking CXX executable ../../bin/test_basic_alphabet cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_alphabet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -o ../../bin/test_basic_alphabet -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_basic_alphabet make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -MF CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o.d -o CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_math.cpp [ 9%] Linking CXX executable ../../bin/test_basic_parallelism cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_parallelism.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -o ../../bin/test_basic_parallelism -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_basic_parallelism make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -MF CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o.d -o CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_smart_pointer.cpp [ 9%] Linking CXX executable ../../bin/test_basic_math cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -o ../../bin/test_basic_math -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_basic_math make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -MF CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o.d -o CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_container.cpp [ 9%] Linking CXX executable ../../bin/test_basic_allocator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_allocator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -o ../../bin/test_basic_allocator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Built target test_basic_allocator make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -MF CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o.d -o CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_proxy.cpp [ 9%] Linking CXX executable ../../bin/test_basic_container cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -o ../../bin/test_basic_container -lrt -lz -lbz2 [ 10%] Linking CXX executable ../../bin/test_basic_aggregate cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_aggregate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -o ../../bin/test_basic_aggregate -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Built target test_basic_container make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Building CXX object tests/basic/CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/basic/CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -MF CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o.d -o CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Built target test_basic_aggregate make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Building CXX object tests/bed_io/CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/bed_io/CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -MF CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o.d -o CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp [ 10%] Linking CXX executable ../../bin/test_basic_smart_pointer cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_smart_pointer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -o ../../bin/test_basic_smart_pointer -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Built target test_basic_smart_pointer make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Building CXX object tests/blast/CMakeFiles/test_blast.dir/test_blast.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/blast/CMakeFiles/test_blast.dir/test_blast.cpp.o -MF CMakeFiles/test_blast.dir/test_blast.cpp.o.d -o CMakeFiles/test_blast.dir/test_blast.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp [ 11%] Linking CXX executable ../../bin/test_basic_proxy cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_proxy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -o ../../bin/test_basic_proxy -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_basic_proxy make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Building CXX object tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o -MF CMakeFiles/test_consensus.dir/test_consensus.cpp.o.d -o CMakeFiles/test_consensus.dir/test_consensus.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.h: In instantiation of 'void SEQAN_TEST_test_basic_iterator_position_arithmetics() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:71:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.h:1149:16: warning: implicitly-declared 'constexpr seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&)' is deprecated [-Wdeprecated-copy] 1149 | it2 = it - 2; | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = int*]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.h:1152:16: warning: implicitly-declared 'constexpr seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&)' is deprecated [-Wdeprecated-copy] 1152 | it2 = it + 2; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = int*]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Iter > >; TSource = Iter > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.h:1000:15: required from 'void SEQAN_TEST_test_basic_iterator_position_transport() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1000 | assign(it2, it); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:68:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'constexpr seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = int*]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_bam_io_bam_file_isOpen_fileIn() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:390:22: required from 'void SEQAN_TEST_test_bed_bed_file_read() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 390 | seqan::BedFileIn bedStream(toCString(inPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:492:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:390:22: required from 'void SEQAN_TEST_test_bed_bed_file_read() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 390 | seqan::BedFileIn bedStream(toCString(inPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:492:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 11%] Linking CXX executable ../../bin/test_basic_iterator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_iterator.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -o ../../bin/test_basic_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_basic_iterator make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Building CXX object tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2 && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -MF CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o.d -o CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = BlastTabular_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = BlastIOContext<>; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::BlastIOContext<>]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_input.h:166:34: required from 'void _testReadTabularWithoutComments(TContext&, std::string, bool, bool) [with TContext = seqan::BlastIOContext<>; std::string = std::__cxx11::basic_string]' 166 | BlastTabularFileIn fileIn(toCString(inPath)); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_input.h:327:36: required from 'void SEQAN_TEST_test_blast_read_tabular_without_comments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 327 | _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:85:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = BlastTabular_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = BlastIOContext<>; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::BlastIOContext<>]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_input.h:166:34: required from 'void _testReadTabularWithoutComments(TContext&, std::string, bool, bool) [with TContext = seqan::BlastIOContext<>; std::string = std::__cxx11::basic_string]' 166 | BlastTabularFileIn fileIn(toCString(inPath)); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_input.h:327:36: required from 'void SEQAN_TEST_test_blast_read_tabular_without_comments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 327 | _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:85:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_record.h: In instantiation of 'seqan::BlastMatch::BlastMatch(const TQId&, const TSId&) [with TAlignRow0_ = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >; TAlignRow1_ = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >; TPos_ = unsigned int; TQId_ = seqan::Segment >, seqan::InfixSegment>; TSId_ = seqan::String >; TSAccs_ = std::vector >; TSTaxIds_ = seqan::String >; TQId = seqan::Segment >, seqan::InfixSegment>; TSId = seqan::String >]': /usr/include/c++/14/bits/new_allocator.h:191:4: required from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = seqan::BlastMatch, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >; _Args = {seqan::Segment >, seqan::InfixSegment>, seqan::String >&}; _Tp = std::_List_node, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >]' 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/alloc_traits.h:534:17: required from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = seqan::BlastMatch, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >; _Args = {seqan::Segment >, seqan::InfixSegment>, seqan::String >&}; _Tp = std::_List_node, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >; allocator_type = std::allocator, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >]' 534 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_list.h:713:33: required from 'std::__cxx11::list<_Tp, _Alloc>::_Node* std::__cxx11::list<_Tp, _Alloc>::_M_create_node(_Args&& ...) [with _Args = {seqan::Segment >, seqan::InfixSegment>, seqan::String >&}; _Tp = seqan::BlastMatch, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >; _Alloc = std::allocator, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >; _Node = std::__cxx11::list, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >, std::allocator, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >::_Node]' 713 | _Node_alloc_traits::construct(__alloc, __p->_M_valptr(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_list.h:2004:32: required from 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {seqan::Segment >, seqan::InfixSegment>, seqan::String >&}; _Tp = seqan::BlastMatch, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >; _Alloc = std::allocator, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >; iterator = std::__cxx11::list, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >, std::allocator, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >::iterator]' 2004 | _Node* __tmp = _M_create_node(std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_list.h:1321:19: required from 'std::__cxx11::list<_Tp, _Alloc>::reference std::__cxx11::list<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {seqan::Segment >, seqan::InfixSegment>, seqan::String >&}; _Tp = seqan::BlastMatch, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >; _Alloc = std::allocator, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >; reference = seqan::BlastMatch, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > >&]' 1321 | this->_M_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:161:44: required from 'void _testBlastOutputGenerateContent(TFile&, seqan::BlastIOContext&, const TFormat&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 161 | records[q].matches.emplace_back(qIds[q], sIds[s]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:497:36: required from 'void _testBlastOutput(seqan::BlastIOContext&, const TFormat&) [with TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 497 | _testBlastOutputGenerateContent(fstream, context, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:514:21: required from 'void SEQAN_TEST_test_blast_write_lowlevel() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 514 | _testBlastOutput(context, BlastTabularLL()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_record.h:204:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 204 | qId(_qId), sId(_sId) | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, PrefixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, PrefixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, PrefixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, PrefixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:596:14: required from 'void seqan::_writeMatchOneLiner(TStream&, BlastIOContext&, const BlastMatch&, const BlastReport&) [with TStream = Iter, std::char_traits >, StreamIterator > >; TScore = Score, Blosum62_> >; TQId = Segment >, InfixSegment>; TSId = String >; TPos = unsigned int; TAlignRow0 = Gaps, Alloc<> >, Tag >; TAlignRow1 = Gaps, Alloc<> >, Tag >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; BlastReport = Tag]' 596 | write(stream, prefix(m.sId, 63)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:715:32: required from 'void seqan::writeRecord(TStream&, BlastIOContext&, const BlastRecord&, const BlastReport&) [with TStream = Iter, std::char_traits >, StreamIterator > >; TScore = Score, Blosum62_> >; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, Segment >, InfixSegment>, String >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, Segment >, InfixSegment>, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; BlastReport = Tag]' 715 | _writeMatchOneLiner(stream, context, m, BlastReport()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:736:16: required from 'void seqan::writeRecord(BlastReportFileOut&, const BlastRecord&) [with TContext = BlastIOContext<>; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, Segment >, InfixSegment>, String >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, Segment >, InfixSegment>, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastReportFileOut = FormattedFile, Tag, BlastIOContext<> >]' 736 | writeRecord(formattedFile.iter, context(formattedFile), r, BlastReport()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:52:20: required from 'void _testBlastOutputWriteFile(TFile&, seqan::BlastIOContext&, const TRecords&, const seqan::BlastReport&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TRecords = seqan::String, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; seqan::BlastReport = seqan::Tag]' 52 | writeRecord(out, r); | ~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:192:30: required from 'void _testBlastOutputGenerateContent(TFile&, seqan::BlastIOContext&, const TFormat&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 192 | _testBlastOutputWriteFile(file, context, records, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:497:36: required from 'void _testBlastOutput(seqan::BlastIOContext&, const TFormat&) [with TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 497 | _testBlastOutputGenerateContent(fstream, context, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:634:21: required from 'void SEQAN_TEST_test_blast_write_report() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 634 | _testBlastOutput(context, BlastReport()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:78:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::PrefixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:551:14: required from 'void seqan::_writeFullMatch(TStream&, BlastIOContext&, const BlastMatch&, const BlastReport&) [with TStream = Iter, std::char_traits >, StreamIterator > >; TScore = Score, Blosum62_> >; TQId = Segment >, InfixSegment>; TSId = String >; TPos = unsigned int; TAlignRow0 = Gaps, Alloc<> >, Tag >; TAlignRow1 = Gaps, Alloc<> >, Tag >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; BlastReport = Tag]' 551 | write(stream, infix(m.sId, beg, end)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:720:28: required from 'void seqan::writeRecord(TStream&, BlastIOContext&, const BlastRecord&, const BlastReport&) [with TStream = Iter, std::char_traits >, StreamIterator > >; TScore = Score, Blosum62_> >; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, Segment >, InfixSegment>, String >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, Segment >, InfixSegment>, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; BlastReport = Tag]' 720 | _writeFullMatch(stream, context, m, BlastReport()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:736:16: required from 'void seqan::writeRecord(BlastReportFileOut&, const BlastRecord&) [with TContext = BlastIOContext<>; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, Segment >, InfixSegment>, String >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, Segment >, InfixSegment>, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastReportFileOut = FormattedFile, Tag, BlastIOContext<> >]' 736 | writeRecord(formattedFile.iter, context(formattedFile), r, BlastReport()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:52:20: required from 'void _testBlastOutputWriteFile(TFile&, seqan::BlastIOContext&, const TRecords&, const seqan::BlastReport&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TRecords = seqan::String, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; seqan::BlastReport = seqan::Tag]' 52 | writeRecord(out, r); | ~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:192:30: required from 'void _testBlastOutputGenerateContent(TFile&, seqan::BlastIOContext&, const TFormat&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 192 | _testBlastOutputWriteFile(file, context, records, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:497:36: required from 'void _testBlastOutput(seqan::BlastIOContext&, const TFormat&) [with TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 497 | _testBlastOutputGenerateContent(fstream, context, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:634:21: required from 'void SEQAN_TEST_test_blast_write_report() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 634 | _testBlastOutput(context, BlastReport()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:78:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_record.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::BlastRecord, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >*; TParam = seqan::BlastRecord, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >*; TParam = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >*; TSource1 = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >*; TSource2 = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1785:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = BlastRecord, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > >; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1785 | return _Resize_String >::resize_(me, new_length); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = String, Alloc<> >, Tag >, Gaps, Alloc<> >, Tag >, unsigned int, Segment >, InfixSegment>, String > > > >&; TSize = int; typename Size::Type = unsigned int]' 1149 | return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:145:11: required from 'void _testBlastOutputGenerateContent(TFile&, seqan::BlastIOContext&, const TFormat&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 145 | resize(records, 3); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:497:36: required from 'void _testBlastOutput(seqan::BlastIOContext&, const TFormat&) [with TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 497 | _testBlastOutputGenerateContent(fstream, context, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:514:21: required from 'void SEQAN_TEST_test_blast_write_lowlevel() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 514 | _testBlastOutput(context, BlastTabularLL()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_record.h:378:8: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 378 | struct BlastRecord | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::BlastRecord, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >::BlastRecord(seqan::BlastRecord, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::PrefixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, PrefixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, PrefixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, PrefixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, PrefixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:596:14: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:736:16: required from 'void seqan::writeRecord(BlastReportFileOut&, const BlastRecord&) [with TContext = BlastIOContext<>; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, Segment >, InfixSegment>, String >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, Segment >, InfixSegment>, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastReportFileOut = FormattedFile, Tag, BlastIOContext<> >]' 736 | writeRecord(formattedFile.iter, context(formattedFile), r, BlastReport()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:52:20: required from 'void _testBlastOutputWriteFile(TFile&, seqan::BlastIOContext&, const TRecords&, const seqan::BlastReport&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TRecords = seqan::String, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; seqan::BlastReport = seqan::Tag]' 52 | writeRecord(out, r); | ~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:192:30: required from 'void _testBlastOutputGenerateContent(TFile&, seqan::BlastIOContext&, const TFormat&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 192 | _testBlastOutputWriteFile(file, context, records, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:497:36: required from 'void _testBlastOutput(seqan::BlastIOContext&, const TFormat&) [with TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 497 | _testBlastOutputGenerateContent(fstream, context, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:634:21: required from 'void SEQAN_TEST_test_blast_write_report() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 634 | _testBlastOutput(context, BlastReport()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:78:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:551:14: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_report_out.h:736:16: required from 'void seqan::writeRecord(BlastReportFileOut&, const BlastRecord&) [with TContext = BlastIOContext<>; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, Segment >, InfixSegment>, String >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, Segment >, InfixSegment>, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastReportFileOut = FormattedFile, Tag, BlastIOContext<> >]' 736 | writeRecord(formattedFile.iter, context(formattedFile), r, BlastReport()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:52:20: required from 'void _testBlastOutputWriteFile(TFile&, seqan::BlastIOContext&, const TRecords&, const seqan::BlastReport&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TRecords = seqan::String, seqan::Alloc<> >, seqan::Tag >, seqan::Gaps, seqan::Alloc<> >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String > > > >; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC; seqan::BlastReport = seqan::Tag]' 52 | writeRecord(out, r); | ~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:192:30: required from 'void _testBlastOutputGenerateContent(TFile&, seqan::BlastIOContext&, const TFormat&) [with TFile = std::basic_fstream; TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 192 | _testBlastOutputWriteFile(file, context, records, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:497:36: required from 'void _testBlastOutput(seqan::BlastIOContext&, const TFormat&) [with TScore = seqan::Score, seqan::Blosum62_> >; TFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::DYNAMIC; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' 497 | _testBlastOutputGenerateContent(fstream, context, TFormat()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast_output.h:634:21: required from 'void SEQAN_TEST_test_blast_write_report() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 634 | _testBlastOutput(context, BlastReport()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:78:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:67:19: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 67 | printAlignment(ss, layout, store, 0, 0, 160, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:67:19: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 67 | printAlignment(ss, layout, store, 0, 0, 160, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:67:19: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 67 | printAlignment(ss, layout, store, 0, 0, 160, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:67:19: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 67 | printAlignment(ss, layout, store, 0, 0, 160, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:67:19: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 67 | printAlignment(ss, layout, store, 0, 0, 160, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:53:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 53 | readRecords(store, fSamIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>]' 427 | value(gaps._source) = source; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1163:21: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1163 | assignSource(readGaps, infix(store.readSeqStore[it->readId], windowInfo.readBeginPos, windowInfo.readEndPos)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:53:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 53 | readRecords(store, fSamIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus_realign.h:63:16: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 63 | reAlignment(store, 0, 1, 30, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:40:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_bed_io_isOpen_fileIn() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:90:19: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 90 | printAlignment(ss, layout, store, /*contigID=*/0, /*beginPos=*/0, /*endPos=*/(int)length(ref), 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:90:19: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 90 | printAlignment(ss, layout, store, /*contigID=*/0, /*beginPos=*/0, /*endPos=*/(int)length(ref), 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:90:19: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 90 | printAlignment(ss, layout, store, /*contigID=*/0, /*beginPos=*/0, /*endPos=*/(int)length(ref), 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:90:19: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 90 | printAlignment(ss, layout, store, /*contigID=*/0, /*beginPos=*/0, /*endPos=*/(int)length(ref), 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::__cxx11::basic_stringstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::__cxx11::basic_stringstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:90:19: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 90 | printAlignment(ss, layout, store, /*contigID=*/0, /*beginPos=*/0, /*endPos=*/(int)length(ref), 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:223: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ [ 11%] Linking CXX executable ../../bin/test_bed_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bed_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -o ../../bin/test_bed_io -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 941 | finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:910:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 910 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:1006:37: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1006 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 11%] Linking CXX executable ../../bin/test_bam_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bam_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -o ../../bin/test_bam_io -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' 272 | buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:384:24: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 384 | buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_bed_io make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake "--color=" [ 11%] Built target test_bam_io make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ [ 11%] Building CXX object tests/find/CMakeFiles/test_find.dir/test_find.cpp.o /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/find/CMakeFiles/test_find.dir/test_find.cpp.o -MF CMakeFiles/test_find.dir/test_find.cpp.o.d -o CMakeFiles/test_find.dir/test_find.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Building CXX object tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -MF CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o.d -o CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole<>; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:463:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = const seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.h:353:15: required from 'void SEQAN_TEST_test_store_io_gff_stream_read_record_gff() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 353 | GffFileIn gffStream(toCString(gffPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.h:353:15: required from 'void SEQAN_TEST_test_store_io_gff_stream_read_record_gff() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 353 | GffFileIn gffStream(toCString(gffPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.h:353:15: required from 'void SEQAN_TEST_test_store_io_gff_stream_read_record_gff() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 353 | GffFileIn gffStream(toCString(gffPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>; TIterator = char*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TAutomaton = Oracle; TNeedle = String >, InfixSegment>, Alloc<> >]' 331 | kit = begin(*p_keyword) + me.lmin; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = MultiBfam]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1354 | Test_Approx_EditDist< Pex > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TAutomaton = Oracle; TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >]' 331 | kit = begin(*p_keyword) + me.lmin; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = MultiBfam]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1354 | Test_Approx_EditDist< Pex > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = Tag]' 425 | THSFinder f(s); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1625:16: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; TFindBeginPatternSpec = void]' 1625 | return find(finder, pattern, static_cast(pattern)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:427:15: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = Tag]' 427 | while(find(f,me.range_table[_getRoot(me)].verifier)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = Tag]' 425 | THSFinder f(s); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1625:16: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; TFindBeginPatternSpec = void]' 1625 | return find(finder, pattern, static_cast(pattern)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:427:15: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = Tag]' 427 | while(find(f,me.range_table[_getRoot(me)].verifier)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, Alloc<> >&; TSource = Segment >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:355:16: required from 'void seqan::_patternInit(Pattern >&, TFinder&) [with TNeedle = String >; TFinder = Finder > >; TMultiFinder = Tag]' 355 | appendValue(me.splitted_needles, infix(value(me.data_host), pr.start, pr.end)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:412:18: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = Tag]' 412 | _patternInit(me, finder); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, Alloc<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:355:16: required from 'void seqan::_patternInit(Pattern >&, TFinder&) [with TNeedle = String, Alloc<> >; TFinder = Finder, Alloc<> > >; TMultiFinder = Tag]' 355 | appendValue(me.splitted_needles, infix(value(me.data_host), pr.start, pr.end)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:412:18: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = Tag]' 412 | _patternInit(me, finder); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>; TIterator = char*; TSpec = Tag; TIntegral = unsigned int]' 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TAutomaton = Oracle; TNeedle = String >, InfixSegment>, Alloc<> >]' 331 | kit = begin(*p_keyword) + me.lmin; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = MultiBfam]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1354 | Test_Approx_EditDist< Pex > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 497 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:332:42: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TAutomaton = Oracle; TNeedle = String >, InfixSegment>, Alloc<> >]' 332 | kit_end = end(*p_keyword); | ~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = MultiBfam]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1354 | Test_Approx_EditDist< Pex > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]' 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TAutomaton = Oracle; TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >]' 331 | kit = begin(*p_keyword) + me.lmin; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = MultiBfam]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1354 | Test_Approx_EditDist< Pex > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 497 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:332:42: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TAutomaton = Oracle; TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >]' 332 | kit_end = end(*p_keyword); | ~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = MultiBfam]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1354 | Test_Approx_EditDist< Pex > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TKeyword = Segment >, SuffixSegment>; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = char; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TText = String >]' 196 | _addStringToTrie(g,terminalStateMap,suffix(text, i),i); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_bom.h:161:21: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = String >]' 161 | createSuffixTrie(me.automaton, terminal_state_map, reverse_string); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = String >; TSpec = Bfam; TNeedle2 = String >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:102:12: required from 'void Test_OnlineAlg() [with TAlgorithmSpec = seqan::Bfam]' 102 | setHost(pattern, needle); | ~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1255:32: required from 'void SEQAN_TEST_test_find_online_BFAM_Trie() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1255 | Test_OnlineAlg >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1905:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TKeyword = Segment, Alloc<> >, SuffixSegment>; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = SimpleType; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TText = String, Alloc<> >]' 196 | _addStringToTrie(g,terminalStateMap,suffix(text, i),i); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_bom.h:161:21: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = String, Alloc<> >]' 161 | createSuffixTrie(me.automaton, terminal_state_map, reverse_string); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = String, Alloc<> >; TSpec = Bfam; TNeedle2 = String, Alloc<> >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1738:16: required from 'void test_pattern_set_host() [with TPatternSpec = seqan::Bfam]' 1738 | setHost(p, ndl); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1868:39: required from 'void SEQAN_TEST_test_pattern_set_host() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1868 | test_pattern_set_host >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1934:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern >, seqan::PrefixSegment>, seqan::Myers<> >; TNeedle = seqan::Segment >, seqan::PrefixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern >, PrefixSegment>, Myers<> >; TNeedle = Segment >, PrefixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment >, PrefixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment >, PrefixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment >, PrefixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, PrefixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, PrefixSegment>&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::PrefixSegment>&; TNeedle = seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::PrefixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1590:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1590 | test_find_on_segments_Helper<>(kHaystack, myPrefix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Myers<> >; TNeedle = seqan::Segment >, seqan::InfixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern >, InfixSegment>, Myers<> >; TNeedle = Segment >, InfixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment >, InfixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, InfixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, InfixSegment>&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::InfixSegment>&; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::InfixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1594:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1594 | test_find_on_segments_Helper<>(kHaystack, myInfix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern >, seqan::SuffixSegment>, seqan::Myers<> >; TNeedle = seqan::Segment >, seqan::SuffixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern >, SuffixSegment>, Myers<> >; TNeedle = Segment >, SuffixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment >, SuffixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment >, SuffixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment >, SuffixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, SuffixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, SuffixSegment>&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::SuffixSegment>&; TNeedle = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::SuffixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1598:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1598 | test_find_on_segments_Helper<>(kHaystack, mySuffix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, Alloc<> >&; TSource = Segment >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:355:16: required from 'void seqan::_patternInit(Pattern >&, TFinder&) [with TNeedle = String >; TFinder = Finder > >; TMultiFinder = Tag]' 355 | appendValue(me.splitted_needles, infix(value(me.data_host), pr.start, pr.end)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:412:18: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = Tag]' 412 | _patternInit(me, finder); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, Alloc<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:355:16: required from 'void seqan::_patternInit(Pattern >&, TFinder&) [with TNeedle = String, Alloc<> >; TFinder = Finder, Alloc<> > >; TMultiFinder = Tag]' 355 | appendValue(me.splitted_needles, infix(value(me.data_host), pr.start, pr.end)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:412:18: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = Tag]' 412 | _patternInit(me, finder); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TKeyword = Segment >, SuffixSegment>; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = char; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TText = String >]' 196 | _addStringToTrie(g,terminalStateMap,suffix(text, i),i); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_bom.h:161:21: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = String >]' 161 | createSuffixTrie(me.automaton, terminal_state_map, reverse_string); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = String >; TSpec = Bfam; TNeedle2 = String >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:102:12: required from 'void Test_OnlineAlg() [with TAlgorithmSpec = seqan::Bfam]' 102 | setHost(pattern, needle); | ~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1255:32: required from 'void SEQAN_TEST_test_find_online_BFAM_Trie() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1255 | Test_OnlineAlg >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1905:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TKeyword = Segment, Alloc<> >, SuffixSegment>; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = SimpleType; TCargo = void; TSpec = const Tag; TTerminalStateMap = String >, Alloc<> >; TText = String, Alloc<> >]' 196 | _addStringToTrie(g,terminalStateMap,suffix(text, i),i); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_bom.h:161:21: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = String, Alloc<> >]' 161 | createSuffixTrie(me.automaton, terminal_state_map, reverse_string); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = String, Alloc<> >; TSpec = Bfam; TNeedle2 = String, Alloc<> >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1738:16: required from 'void test_pattern_set_host() [with TPatternSpec = seqan::Bfam]' 1738 | setHost(p, ndl); | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1868:39: required from 'void SEQAN_TEST_test_pattern_set_host() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1868 | test_pattern_set_host >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1934:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::PrefixSegment>*; TParam = const seqan::Segment >, seqan::PrefixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, PrefixSegment>*; TParam = const Segment >, PrefixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, PrefixSegment>, Tag >; TValue = Segment >, PrefixSegment>; typename Value::Type = Segment >, PrefixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, PrefixSegment>; TValue2 = Segment >, PrefixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, PrefixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment >, PrefixSegment>; typename Reference > >::Type = Segment >, PrefixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(Holder >&, const TValue2&) [with TValue = Segment >, PrefixSegment>; TValue2 = Segment >, PrefixSegment>]' 840 | set(value(me), value_); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, PrefixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, PrefixSegment>&]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::PrefixSegment>&; TNeedle = seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::PrefixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1590:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1590 | test_find_on_segments_Helper<>(kHaystack, myPrefix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment >, PrefixSegment>]' 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern >, seqan::PrefixSegment>, seqan::Myers<> >; TNeedle = seqan::Segment >, seqan::PrefixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern >, PrefixSegment>, Myers<> >; TNeedle = Segment >, PrefixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment >, PrefixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment >, PrefixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment >, PrefixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, PrefixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, PrefixSegment>&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::PrefixSegment>&; TNeedle = seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::PrefixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1590:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1590 | test_find_on_segments_Helper<>(kHaystack, myPrefix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment >, InfixSegment>; typename Reference > >::Type = Segment >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(Holder >&, const TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = Segment >, InfixSegment>]' 840 | set(value(me), value_); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, InfixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, InfixSegment>&]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::InfixSegment>&; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::InfixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1594:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1594 | test_find_on_segments_Helper<>(kHaystack, myInfix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::SuffixSegment>*; TParam = const seqan::Segment >, seqan::SuffixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, SuffixSegment>*; TParam = const Segment >, SuffixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, SuffixSegment>, Tag >; TValue = Segment >, SuffixSegment>; typename Value::Type = Segment >, SuffixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, SuffixSegment>; TValue2 = Segment >, SuffixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, SuffixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment >, SuffixSegment>; typename Reference > >::Type = Segment >, SuffixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(Holder >&, const TValue2&) [with TValue = Segment >, SuffixSegment>; TValue2 = Segment >, SuffixSegment>]' 840 | set(value(me), value_); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, SuffixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, SuffixSegment>&]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::SuffixSegment>&; TNeedle = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::SuffixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1598:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1598 | test_find_on_segments_Helper<>(kHaystack, mySuffix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment >, SuffixSegment>]' 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern >, seqan::SuffixSegment>, seqan::Myers<> >; TNeedle = seqan::Segment >, seqan::SuffixSegment>; THasState = seqan::True]' 212 | setHost(pattern.data_findBeginPattern, reverseString(needle_)); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern >, SuffixSegment>, Myers<> >; TNeedle = Segment >, SuffixSegment>]' 330 | return FindBeginImpl_::_findBeginInit(pattern, needle_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment >, SuffixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment >, SuffixSegment>]' 558 | _findBeginInit(pattern, needle); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment >, SuffixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' 660 | _patternFirstInit(pattern, needle(pattern)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment >, SuffixSegment>; TSpec = Myers<>; TNeedle2 = const Segment >, SuffixSegment>&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = const seqan::Segment >, seqan::SuffixSegment>&; TNeedle = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' 452 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1566:50: required from 'void test_find_on_segments_Helper(TString&, const TSegmentOrString&) [with TString = seqan::String >; TSegmentOrString = seqan::Segment >, seqan::SuffixSegment>]' 1566 | Pattern > pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1598:35: required from 'void SEQAN_TEST_test_find_on_segments() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1598 | test_find_on_segments_Helper<>(kHaystack, mySuffix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1889:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TTerminalStateMap = String >, Alloc<> >; TKeyword = Segment >, InfixSegment>; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:121:49: required from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TTerminalStateMap = String >, Alloc<> >; TKeywords = String >, InfixSegment>, Alloc<> >]' 121 | for(;!atEnd(it);goNext(it)) _addStringToTrie(g,terminalStateMap,*it,position(it)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_ahocorasick.h:147:15: required from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = String >, InfixSegment>, Alloc<> >]' 147 | createTrie(me.data_graph,me.data_terminalStateMap, host(me)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_ahocorasick.h:209:18: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = String >, InfixSegment>, Alloc<> >]' 209 | _createAcTrie(me); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = String >, InfixSegment>, Alloc<> >; TSpec = Tag; TNeedle2 = String >, InfixSegment>, Alloc<> >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:373:10: required from 'void seqan::_patternInit(Pattern >&, TFinder&) [with TNeedle = String >; TFinder = Finder > >; TMultiFinder = Tag]' 373 | setHost(me.multiPattern,me.splitted_needles); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:412:18: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder > >; TNeedle = String >; TMultiFinder = Tag]' 412 | _patternInit(me, finder); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 923 | SEQAN_ASSERT(find(fd, pt)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String >, Alloc<> >; TKeyword = Segment, Alloc<> >, InfixSegment>; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:121:49: required from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String >, Alloc<> >; TKeywords = String, Alloc<> >, InfixSegment>, Alloc<> >]' 121 | for(;!atEnd(it);goNext(it)) _addStringToTrie(g,terminalStateMap,*it,position(it)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_ahocorasick.h:147:15: required from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >]' 147 | createTrie(me.data_graph,me.data_terminalStateMap, host(me)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_ahocorasick.h:209:18: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >]' 209 | _createAcTrie(me); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >; TSpec = Tag; TNeedle2 = String, Alloc<> >, InfixSegment>, Alloc<> >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:373:10: required from 'void seqan::_patternInit(Pattern >&, TFinder&) [with TNeedle = String, Alloc<> >; TFinder = Finder, Alloc<> > >; TMultiFinder = Tag]' 373 | setHost(me.multiPattern,me.splitted_needles); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:412:18: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = Tag]' 412 | _patternInit(me, finder); | ~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:463:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Segment, Alloc<> >, InfixSegment>*; TSource1 = const Segment, Alloc<> >, InfixSegment>*; TSource2 = const Segment, Alloc<> >, InfixSegment>*]' 463 | valueConstruct(target_begin, *source_begin); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1023:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = const Segment, Alloc<> >, InfixSegment>; TValueTarget = Segment, Alloc<> >, InfixSegment>]' 1023 | _arrayConstructCopyDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const Segment, Alloc<> >, InfixSegment>; TValueTarget = Segment, Alloc<> >, InfixSegment>]' 1031 | _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TExpand = seqan::Tag]' 1011 | arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >; TSpec = Tag; typename Host >::Type = String, Alloc<> >, InfixSegment>, Alloc<> >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_ahocorasick.h:269:49: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >, InfixSegment>, Alloc<> >]' 269 | me.data_needleLength = length(value(host(me), me.data_keywordIndex))-1; | ~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> > >; TNeedle = String, Alloc<> >; TMultiFinder = Tag]' 446 | while(find(mf,me.multiPattern)) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' 990 | SEQAN_ASSERT(find(long_fnd,long_pat)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1339 | Test_Approx_EditDist(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long long unsigned int; TSource = std::__cxx11::basic_string]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long long unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = Segment, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::Segment, seqan::InfixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = std::__cxx11::basic_string]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long long unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long long unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_gff_io_isOpen_fileIn() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 12%] Linking CXX executable ../../bin/test_gff_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -o ../../bin/test_gff_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Built target test_gff_io make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_algorithms /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Building CXX object tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -MF CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o.d -o CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_algorithms/test_graph_algorithms.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_algorithms/test_graph_algorithms.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/set:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:68: In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = const seqan::BlastMatchField<>::Enum; unsigned int _Nm = 12]', inlined from 'void seqan::_readCommentLinesImpl(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:345:74, inlined from 'void seqan::_readCommentLines(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:460:26, inlined from 'void seqan::_readRecordWithCommentLines(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TFwdIterator = Iter >, StreamIterator > >; TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:716:22: /usr/include/c++/14/array:219:24: warning: array subscript 12 is above array bounds of 'std::__array_traits::Enum, 12>::_Type' {aka 'const seqan::BlastMatchField<>::Enum [12]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::_readRecordWithCommentLines(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TFwdIterator = Iter >, StreamIterator > >; TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::Enum, 12>::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = const seqan::BlastMatchField<>::Enum; unsigned int _Nm = 12]', inlined from 'void seqan::_readCommentLinesImpl(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:345:74, inlined from 'void seqan::_readCommentLines(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:460:26, inlined from 'void seqan::_readCommentLines(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:440:1, inlined from 'void seqan::_readRecordWithCommentLines(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TFwdIterator = Iter >, StreamIterator > >; TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:716:22, inlined from 'void seqan::readRecord(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:889:36: /usr/include/c++/14/array:219:24: warning: array subscript 12 is above array bounds of 'std::__array_traits::Enum, 12>::_Type' {aka 'const seqan::BlastMatchField<>::Enum [12]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::readRecord(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch >, Tag >, Gaps >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::Enum, 12>::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 12%] Linking CXX executable ../../bin/test_consensus cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus.dir/test_consensus.cpp.o -o ../../bin/test_consensus -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Built target test_consensus make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Building CXX object tests/graph_align/CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_align/CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -MF CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o.d -o CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:42: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 12%] Linking CXX executable ../../bin/test_graph_algorithms cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_algorithms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -o ../../bin/test_graph_algorithms -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Built target test_graph_algorithms make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 12%] Building CXX object tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -MF CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o.d -o CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph >, Dependent > > > >; TSequence = String >; TSetSpec = Owner<>; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph >, Dependent > > > >; TSequence = String >; TSetSpec = Owner<>]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:71:20: required from 'void seqan::SEQAN_TEST_RefineMatchesSelfEdges() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 71 | matchRefinement(matches,seq_set,ali_graph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:71:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:189: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:748:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 748 | next_best_begin= _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,next_best_end), score_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Tag > >; TValue = seqan::Align >, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, Tag >; TTargetSpec = Alloc<>; TValue = Align >, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, Tag > >&; TSource = Align >, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:387:24: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 387 | appendValue(alis,ali); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align >, seqan::Tag >::Align(const seqan::Align >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment >, InfixSegment>; TStringV = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:235:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 235 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:253:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 253 | finger2 = col_; //points to last column | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:255:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 255 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'typename seqan::Iterator, const seqan::Tag >::Type seqan::_smithWatermanTrace(Gaps&, Gaps&, typename LocalAlignmentFinder::TBoolMatrix&, Iter, CountingIteratorImpl_ > >, const Score&) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; unsigned int DIMENSION = 0; typename Iterator, const Tag >::Type = Iter, CountingIteratorImpl_ > >; typename LocalAlignmentFinder::TBoolMatrix = String]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:37: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:595:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 595 | it_ = source_; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'void seqan::_smithWatermanDeclump(LocalAlignmentFinder&, Gaps&, Gaps&, const Score&) [with TScoreValue = int; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:736:26: required from 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 736 | _smithWatermanDeclump(sw_finder, gapsH, gapsV, score_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:445:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 445 | finger1 = end_col; //points to last column | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:447:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 447 | finger0 = end_col; | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:63: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_align.h: In instantiation of 'TScoreValue seqan::_getRefinedMatchScore(Score&, TStringSet&, Align&, TValue, TValue, TValue, TValue) [with TScoreValue = int; TScoreSpec = Tag; TStringSet = StringSet > >; TAliSource = String >; TAliSpec = Tag; TValue = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:361:75: required from 'void seqan::_makeRefinedGraphEdges(TAlignmentString&, TPropertyMap&, TStringSet&, TSeqMap&, TScore&, TAliGraph&, Tag) [with TAlignmentString = String >, Tag > >; TStringSet = StringSet > >; TSeqMap = std::map; TPropertyMap = bool; TScore = Score >; TAliGraph = Graph >, Dependent > > > >]' 361 | typename Value::Type score = _getRefinedMatchScore(score_type,seqs,*ali_it,act_pos,pos_j,fragmentLength(ali_g,act_knot),fragmentLength(ali_g,vd));//,fragmentLength(ali_g,vd)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:422:27: required from 'void seqan::_makeAlignmentGraphFromRefinedSegments(String >&, TAlignmentString&, TScore&, StringSet&, TSeqMap&, TAliGraph&, Tag, bool) [with TValue = unsigned int; TAlignmentString = String >, Tag > >; TScore = Score >; TSequence = String >; TSetSpec = Owner<>; TAliGraph = Graph >, Dependent > > > >; TSeqMap = std::map; TTagSpec = TagExactRefinement_]' 422 | _makeRefinedGraphEdges(alis,pm,seqs,seq_map,score_type,ali_g,tag); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:643:43: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >, Tag > >; TAnnotation = bool; TOutGraph = Graph >, Dependent > > > >; TSequence = String >; TSetSpec = Owner<>; TScore = Score >; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Align >, Tag >]' 643 | _makeAlignmentGraphFromRefinedSegments(all_nodes,alis,score_type,seq,seq_map,ali_graph,tag,annotation); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:664:20: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, Score&, TOutGraph&) [with TAlignmentString = String >, Tag > >; TScoreValue = int; TScoreSpec = Tag; TOutGraph = Graph >, Dependent > > > >; TSequence = String >; TSetSpec = Owner<>]' 664 | matchRefinement(alis,seq,score_type,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:446:20: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 446 | matchRefinement(alis,seq_set,score_type,ali_graph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_align.h:133:13: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 133 | row0_it = iter(row(segment,0),toViewPosition(row(segment,0),pos_i)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_align.h:134:13: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 134 | row1_it = iter(row(segment,1),toViewPosition(row(segment,1),pos_j)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment >, InfixSegment>; TStringV = Segment >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:220:22: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment >, InfixSegment>; TStringV = Segment >, InfixSegment>]' 220 | TStringIteratorH x = x_end; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align >, seqan::Tag >*; TParam = seqan::Align >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align >, Tag >*; TParam = Align >, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Tag > >; TValue = seqan::Align >, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, Tag >; TTargetSpec = Alloc<>; TValue = Align >, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, Tag > >&; TSource = Align >, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:387:24: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 387 | appendValue(alis,ali); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align >, seqan::Tag >::Align(const seqan::Align >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align >, seqan::Tag >*; TParam = seqan::Align >, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align >, Tag >*; TParam = Align >, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Tag > >; TValue = seqan::Align >, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, Tag >; TTargetSpec = Alloc<>; TValue = Align >, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, Tag > >&; TSource = Align >, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:387:24: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 387 | appendValue(alis,ali); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align >, seqan::Tag >::Align(const seqan::Align >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:37: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment >, InfixSegment>; TStringV = Segment >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = char*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment >, InfixSegment>; TStringV = Segment >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:216:33: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment >, InfixSegment>; TStringV = Segment >, InfixSegment>]' 216 | TStringIteratorH x_end = end(strH) - 1; | ~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String >; TGapsSpecH = Tag; TSourceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:381:36: required from 'void seqan::getAlignments(String&, StringSet&, TScore&, int&, int) [with TAlign = Align >, Tag >; TSequence = String >; TSeqSpec = Owner<>; TScore = Score >]' 381 | if (!nextLocalAlignment(ali, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_match_refinement.h:440:18: required from 'void seqan::SEQAN_TEST_RefineAlign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 440 | getAlignments(alis,seq_set,score_type,numAlignments,cutoff); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align/test_graph_align.cpp:74:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 12%] Linking CXX executable ../../bin/test_blast cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_blast.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_blast.dir/test_blast.cpp.o -o ../../bin/test_blast -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Built target test_blast make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 12%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -MF CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o.d -o CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_property_map.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String > >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int> >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment >]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String > >; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int> >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_tcoffee.h:459:20: required from here 459 | matchRefinement(matches,strSet,g); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_property_map.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_property_map.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_graph_types_property_map cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_property_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -o ../../bin/test_graph_types_property_map -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_graph_types_property_map make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_types/CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -MF CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o.d -o CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, AdaptorIterator > >; typename RemoveReference::Type = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = Segment; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TText = char*]' 196 | _addStringToTrie(g,terminalStateMap,suffix(text, i),i); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:114:21: required from 'void SEQAN_TEST_test_graph_types_derived_trie() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 114 | createSuffixTrie(g, pos, str); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:160:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = char*]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = char*; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, AdaptorIterator > >; typename RemoveReference::Type = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:64: required from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = Segment; TPos = unsigned int]' 66 | typename Iterator::Type sIt = begin(str, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TText = char*]' 196 | _addStringToTrie(g,terminalStateMap,suffix(text, i),i); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:114:21: required from 'void SEQAN_TEST_test_graph_types_derived_trie() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 114 | createSuffixTrie(g, pos, str); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:160:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = char*]' 129 | operator = (Segment const & source) | ^~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_consensus_v2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus_v2.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -o ../../bin/test_consensus_v2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_consensus_v2 make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -MF CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o.d -o CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_iterators.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_iterators.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_iterators.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_graph_types_derived cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_derived.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -o ../../bin/test_graph_types_derived -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_graph_types_derived make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_types.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_types/CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -MF CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o.d -o CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_types.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_types.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_types.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_graph_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -o ../../bin/test_graph_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_graph_align make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_utils.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/graph_types/CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o -MF CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o.d -o CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_utils.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_utils.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_utils.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_graph_types_iterators cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_iterators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -o ../../bin/test_graph_types_iterators -lrt -lz -lbz2 In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1032:31, inlined from 'void seqan::assign(String&, const TSource&, TSize, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TSize = unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1065:42, inlined from 'typename seqan::DisableIf::Type> >, void>::Type seqan::assign(TTarget&&, TSource&&, typename Size::Type) [with TTarget = String >&; TSource = const char&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:877:11, inlined from 'seqan::String >::String(const TSource&, TSize) [with TSource = char; TSize = unsigned int; Dummy = void; = void; TValue = char; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:171:19, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1242:47, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void seqan::append(TTarget&&, const TSource&) [with TTarget = String >&; TSource = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:903:11, inlined from 'void seqan::_createEdgeAttributes(const Graph >&, TEdgeAttributes&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TEdgeAttributes = String > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_drawing.h:274:15: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object '' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_drawing.h: In function 'void seqan::_createEdgeAttributes(const Graph >&, TEdgeAttributes&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TEdgeAttributes = String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_drawing.h:274:15: note: '' declared here 274 | append(tmp, label(itEd)); | ~~~~~~^~~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void seqan::append(TTarget&&, const TSource&) [with TTarget = String >&; TSource = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:903:11, inlined from 'void seqan::_createEdgeAttributes(const Graph >&, TEdgeAttributes&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TEdgeAttributes = String > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_drawing.h:274:15: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object '' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_drawing.h: In function 'void seqan::_createEdgeAttributes(const Graph >&, TEdgeAttributes&) [with TAlphabet = char; TCargo = void; TSpec = Tag; TEdgeAttributes = String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_drawing.h:274:15: note: '' declared here 274 | append(tmp, label(itEd)); | ~~~~~~^~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_graph_types_iterators make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -MF CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o.d -o CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp [ 13%] Linking CXX executable ../../bin/test_graph_types_utils cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o -o ../../bin/test_graph_types_utils -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_graph_types_utils make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -MF CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o.d -o CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_find cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find.dir/test_find.cpp.o -o ../../bin/test_find -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 13%] Built target test_find make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Tag > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = ModifiedString, Alloc<> >, Tag >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:62:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 62 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:54:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, FunctorConvert, char> > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = ModifiedString, Alloc<> >, FunctorConvert, char> >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:88:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringViewEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 88 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >, IndexEsa<> >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:73:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 73 | goNext(iter1); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >, IndexEsa<> >; TSpec = PostorderEmptyEdges; THideEmptyEdges = False]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PostorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:73:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 73 | goNext(iter1); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:88:65: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 88 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Tag > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Tag > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = ModifiedString, Alloc<> >, Tag >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:62:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 62 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:54:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, FunctorConvert, char> > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, FunctorConvert, char> > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = ModifiedString, Alloc<> >, FunctorConvert, char> >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:88:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringViewEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 88 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -MF CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o.d -o CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 143 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 143 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 13%] Linking CXX executable ../../bin/test_graph_msa cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_msa.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -o ../../bin/test_graph_msa -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 143 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:65:49: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexEsa<> >; TIndex2 = Index > >, IndexWotd<> >]' 65 | typename Iterator::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:196:47: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 196 | crossIndicesChar, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:49:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 13%] Built target test_graph_msa make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -MF CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o.d -o CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 143 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 143 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:280:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 280 | TRecurse recurse(filter); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:280:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 280 | TRecurse recurse(filter); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:280:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 280 | TRecurse recurse(filter); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 329 | ++in; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:626:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = unsigned int; TStringSpec = Alloc<>; TInput = Pipe >, Source<> >, Caster >; TSpec = Skew3]' 626 | for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src) | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:651:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = unsigned int; TStringSpec = Alloc<>; TInput = Pipe >, Source<> >, Caster >; TSpec = Skew3]' 651 | assign(dest, src); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:71:21: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 71 | suffixArray << creator; | ~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = ModifiedString, Alloc<> >, Tag >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 440 | ++in; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:626:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = unsigned int; TStringSpec = Alloc<>; TInput = Pipe >, Source<> >, Caster >; TSpec = Skew7]' 626 | for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src) | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:651:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = unsigned int; TStringSpec = Alloc<>; TInput = Pipe >, Source<> >, Caster >; TSpec = Skew7]' 651 | assign(dest, src); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:71:21: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew7]' 71 | suffixArray << creator; | ~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:197:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 197 | _createSuffixArrayPipelining(sa, text, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 13%] Linking CXX executable ../../bin/test_graph_types_types cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_types.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, Tag >, Tag >; TSpec = SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Tag >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, Tag >, Tag >, SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, Tag >, Tag >, SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, Tag >, Tag >, MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, Tag >, Tag >; TSpec = SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Tag >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, Tag >, Tag >, SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, Tag >, Tag >, SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, Tag >, Tag >, MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, Tag >, Tag >; TSpec = SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Tag >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, Tag >, Tag >, SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, Tag >, Tag >, SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, Tag >, Tag >, MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, Tag >, Tag >; TSpec = SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Tag >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, Tag >, Tag >, SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, Tag >, Tag >, SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, Tag >, Tag >, MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, Tag >, Tag >; TSpec = MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Tag >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, Tag >, Tag >, SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, Tag >, Tag >, SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, Tag >, Tag >, MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, Tag >, Tag >; TSpec = MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Tag >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, Tag >, Tag >, SorterSpec, Tuple, 6, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, Tag >, Tag >, SorterSpec, Tuple, 4, Tag >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, Tag >, Tag >, SorterSpec, Tuple, 5, Tag >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, Tag >, Tag >, MapperSpec, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Tag >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -o ../../bin/test_graph_types_types -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:109:21: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 109 | suffixArray << creator; | ~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew3>, Filter<_skew3UnslicerFunc > >, Counter>]' 1376 | return assign(dest, src); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:299:30: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 299 | names_linear << renamer; | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String >; TObject = String >; TAlgSpec = Skew3]' 69 | creator_t creator(unsigner); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:191:33: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 191 | _createSuffixArrayPipelining(sa, text, Skew3()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 13%] Built target test_graph_types_types make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, Tag >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, Tag >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = ModifiedString, Alloc<> >, Tag >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = ModifiedString, Alloc<> >, Tag >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:75:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseFM() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 75 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:117:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 117 | indexCreate(index1, EsaSA(), Skew7()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -MF CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o.d -o CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexWotd<> >; TIndex2 = Index > >, IndexWotd > >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 203 | crossIndicesChar, IndexWotd > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index > >, IndexWotd<> >; TIndex2 = Index > >, IndexWotd > >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >; TText = StringSet > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >]' 129 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 203 | crossIndicesChar, IndexWotd > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, Alloc<> > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, Packed<> >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, External > >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, MMap<> >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::MMap<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::MMap<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, MMap<> >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = MMap<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 218 | crossStringsDna, Alloc<>, MMap<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, Alloc<> > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, Packed<> >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, External > >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet, MMap<> >, Owner > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::MMap<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::MMap<> >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, MMap<> >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = MMap<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 218 | crossStringsDna, Alloc<>, MMap<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:73:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Alloc<> > >, IndexWotd<> >]' 73 | goNext(iter1); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet, Alloc<> > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 175 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:208:46: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDna() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 208 | crossIndicesDna, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:52:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = PostorderEmptyEdges; THideEmptyEdges = False]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PostorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:73:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Alloc<> > >, IndexWotd<> >]' 73 | goNext(iter1); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:88:65: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet, Alloc<> > >]' 88 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 175 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:208:46: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDna() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 208 | crossIndicesDna, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:52:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Alloc<> >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = PostorderEmptyEdges; THideEmptyEdges = False]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PostorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Alloc<> >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:106:65: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 106 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Packed<> >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = PostorderEmptyEdges; THideEmptyEdges = False]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PostorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Packed<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Packed<> >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:106:65: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 106 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, External > >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = PostorderEmptyEdges; THideEmptyEdges = False]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PostorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, External > >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, External > >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:106:65: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 106 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, MMap<> >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, MMap<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = MMap<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 218 | crossStringsDna, Alloc<>, MMap<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = PostorderEmptyEdges; THideEmptyEdges = False]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >; TTraits = PostorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, MMap<> >, Owner > >, IndexEsa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:74:15: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, MMap<> >, Owner > >, IndexEsa<> >]' 74 | goNext(iter2); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:106:65: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, MMap<> >, Owner > >]' 106 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = MMap<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 218 | crossStringsDna, Alloc<>, MMap<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Alloc<> > >, IndexWotd<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet, Alloc<> > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 175 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:208:46: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDna() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 208 | crossIndicesDna, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:52:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:136: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >*; TParam = const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = StringSet, Packed<> >, Owner > >*; TParam = const StringSet, Packed<> >, Owner > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Owner > >, Tag >; TValue = StringSet, Packed<> >, Owner > >; typename Value::Type = StringSet, Packed<> >, Owner > >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = StringSet, Packed<> >, Owner > >; TValue2 = StringSet, Packed<> >, Owner > >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = StringSet, Packed<> >, Owner > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = StringSet, Packed<> >, Owner > >; typename Reference > >::Type = StringSet, Packed<> >, Owner > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(Index&, FibreText) [with TText = StringSet, Packed<> >, Owner > >; TSpec = IndexEsa<>; typename Fibre, const Tag >::Type = StringSet, Packed<> >, Owner > >; FibreText = const Tag]' 786 | return value(index.text); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:1357:122: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::indexText(Index&) [with TText = StringSet, Packed<> >, Owner > >; TSpec = IndexEsa<>; typename Fibre, const Tag >::Type = StringSet, Packed<> >, Owner > >]' 1357 | inline typename Fibre, FibreText>::Type & indexText(Index &index) { return getFibre(index, FibreText()); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:98:5: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 98 | SEQAN_ASSERT(indexText(index1) == indexText(index2)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h:81:7: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 81 | class StringSet > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::StringSet, seqan::Packed<> >, seqan::Owner > >::StringSet(const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Packed<> >, InfixSegment>; typename Iterator >::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Packed<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; typename RemoveReference::Type = Segment, Packed<> >, InfixSegment>; typename Iterator >::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Packed<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; typename Iterator >::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Packed<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, Packed<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Packed<> >, Owner > >, IndexEsa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, External > >, InfixSegment>; typename Iterator >::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, External > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >; typename RemoveReference::Type = Segment, External > >, InfixSegment>; typename Iterator >::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, External > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >; typename Iterator >::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, External > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, External > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, External > >, Owner > >, IndexEsa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::External > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::External > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::External > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::External > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::External > >, seqan::InfixSegment>; TIterator = seqan::ExtStringFwdConstIterator, seqan::External > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, MMap<> >, InfixSegment>; typename Iterator >::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, MMap<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, MMap<> >, InfixSegment>; typename Iterator >::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, MMap<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, MMap<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, MMap<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, MMap<> >, Owner > >, IndexEsa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, MMap<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = MMap<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 218 | crossStringsDna, Alloc<>, MMap<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::MMap<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexWotd<> >; TIndex2 = Index, Alloc<> > >, IndexWotd > >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >; TText = StringSet, Alloc<> > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >]' 175 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:229:53: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 229 | crossIndicesDna, IndexWotd > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexWotd<> >; TIndex2 = Index, Alloc<> > >, IndexWotd > >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >; TText = StringSet, Alloc<> > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = IndexWotd<>; TIndexSpec2 = IndexWotd >]' 175 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:229:53: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 229 | crossIndicesDna, IndexWotd > >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 13%] Linking CXX executable ../../bin/test_index_crosscompare_char_dfi cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char_dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -o ../../bin/test_index_crosscompare_char_dfi -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_index_crosscompare_char_dfi make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -MF CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o.d -o CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Alloc<> > >, IndexWotd<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>; TText = StringSet, Alloc<> > >]' 87 | */ crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = IndexEsa<>; TIndexSpec2 = IndexWotd<>]' 175 | crossIndex (t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:208:46: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDna() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 208 | crossIndicesDna, IndexWotd<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:52:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Packed<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Packed<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Packed<> >, InfixSegment>; typename Iterator >::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Packed<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; typename RemoveReference::Type = Segment, Packed<> >, InfixSegment>; typename Iterator >::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Packed<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; typename Iterator >::Type = Iter, Packed<> >, InfixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Packed<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, Packed<> >, Owner > >, IndexEsa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Packed<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Packed<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | crossStringsDna, Alloc<>, Packed<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, External > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, External > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::External > >, seqan::InfixSegment>; TIterator = seqan::ExtStringFwdConstIterator, seqan::External > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, External > >, InfixSegment>; typename Iterator >::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, External > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >; typename RemoveReference::Type = Segment, External > >, InfixSegment>; typename Iterator >::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, External > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >; typename Iterator >::Type = Iter, External > >, InfixSegment>, AdaptorIterator, External > > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, External > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, External > >, Owner > >, IndexEsa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::External > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::External > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::External > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::External > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, MMap<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, MMap<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, MMap<> >, InfixSegment>; typename Iterator >::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, MMap<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, MMap<> >, InfixSegment>; typename Iterator >::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, MMap<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, MMap<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, MMap<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = TopDown >; TIndex1 = Index, Alloc<> > >, IndexEsa<> >; TIndex2 = Index, MMap<> >, Owner > >, IndexEsa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, MMap<> >, Owner > >]' 105 | crossBottomUp< TopDown > > (index1, index2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = MMap<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 218 | crossStringsDna, Alloc<>, MMap<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::MMap<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, External > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, External > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >; TLimitsString = seqan::String > >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 13%] Linking CXX executable ../../bin/test_index_crosscompare_dna_dfi cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna_dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -o ../../bin/test_index_crosscompare_dna_dfi -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, Alloc<> >, Owner > >]' 100 | typename Iterator, TopDown > >::Type iter1(index1); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = Alloc<>]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 215 | crossStringsDna, Alloc<>, Alloc<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ [ 13%] Built target test_index_crosscompare_dna_dfi make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:101:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = IndexEsa<>; TText1 = StringSet, Alloc<> > >; TText2 = StringSet, External > >, Owner > >]' 101 | typename Iterator, TopDown > >::Type iter2(index2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = IndexEsa<>; TStringSpec1 = Alloc<>; TStringSpec2 = External >]' 191 | crossSameIndex (t, t2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 217 | crossStringsDna, Alloc<>, External<> >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -MF CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o.d -o CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexQGram > >; TSource = Index >, IndexQGram > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexQGram > >; TValue2 = Index >, IndexQGram > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexQGram > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexQGram > >; typename Reference > >::Type = Index >, IndexQGram > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexQGram >; TSpecFinder = const Tag; typename Parameter_ >::Type = Index >, IndexQGram > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder >, IndexQGram > > >; typename Parameter_::Type>::Type = Index >, IndexQGram > >&; typename Haystack::Type = Index >, IndexQGram > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_qgram.h:75:33: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, QGramFindLookup) [with TText = String >; TSpec = IndexQGram >; TSpecFinder = const Tag; TPattern = char [3]; QGramFindLookup = const Tag]' 75 | TIndex &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = IndexQGram >; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_qgram_index.h:327:5: required from 'void seqan::SEQAN_TEST_testQGramFind() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 327 | SEQAN_ASSERT(find(finder, "be")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:62:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexQGram > >& seqan::Index >, seqan::IndexQGram > >::operator=(const seqan::Index >, seqan::IndexQGram > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index >, seqan::IndexQGram > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::String >; TShapeSpec = seqan::UngappedShape<2>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:50: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 120 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 120 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 120 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 120 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 120 | SeqFileIn inputFile(path.c_str()); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ [ 13%] Linking CXX executable ../../bin/test_index_qgram cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_qgram.dir/link.txt --verbose=1 [ 15%] Linking CXX executable ../../bin/test_index_crosscompare_char cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -o ../../bin/test_index_qgram -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -o ../../bin/test_index_crosscompare_char -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Built target test_index_crosscompare_char make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Built target test_index_qgram make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Building CXX object tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -MF CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o.d -o CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp [ 15%] Building CXX object tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -MF CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o.d -o CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_drawing.h:67:15: required from 'void seqan::writeRecords(TFile&, Index >&, DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TText = String >; TESASpec = void; DotDrawing = Tag]' 67 | TIterator it(stree); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:45:17: required from 'void SEQAN_TEST_test_index_drawing_esa_dot() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 45 | writeRecords(sstream, stree, seqan::DotDrawing()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:80:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_drawing.h:101:18: required from 'void seqan::writeRecords(TFile&, Index >&, DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TText = String >; TESASpec = void; DotDrawing = Tag]' 101 | write(iter, parentEdgeLabel(it)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:45:17: required from 'void SEQAN_TEST_test_index_drawing_esa_dot() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 45 | writeRecords(sstream, stree, seqan::DotDrawing()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:80:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_drawing.h:67:15: required from 'void seqan::writeRecords(TFile&, Index >&, DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TText = String >; TESASpec = void; DotDrawing = Tag]' 67 | TIterator it(stree); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:45:17: required from 'void SEQAN_TEST_test_index_drawing_esa_dot() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 45 | writeRecords(sstream, stree, seqan::DotDrawing()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:80:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks<>; TDfsOrder = Preorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks<>]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2256:24: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Preorder; THideEmptyEdges = True]' 2256 | if (!goDown(it) && !goRight(it)) | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:268:11: required from 'const seqan::Iter& seqan::operator++(Iter&) [with TContainer = Index > >; TSpec = VSTree > >]' 268 | goNext(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_drawing.h:69:21: required from 'void seqan::writeRecords(TFile&, Index >&, DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TText = String >; TESASpec = void; DotDrawing = Tag]' 69 | for(;!atEnd(it);++it) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:45:17: required from 'void SEQAN_TEST_test_index_drawing_esa_dot() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 45 | writeRecords(sstream, stree, seqan::DotDrawing()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:80:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Preorder; THideEmptyEdges = True]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:268:11: required from 'const seqan::Iter& seqan::operator++(Iter&) [with TContainer = Index > >; TSpec = VSTree > >]' 268 | goNext(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_drawing.h:69:21: required from 'void seqan::writeRecords(TFile&, Index >&, DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TText = String >; TESASpec = void; DotDrawing = Tag]' 69 | for(;!atEnd(it);++it) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:45:17: required from 'void SEQAN_TEST_test_index_drawing_esa_dot() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 45 | writeRecords(sstream, stree, seqan::DotDrawing()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:80:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_drawing.h:101:18: required from 'void seqan::writeRecords(TFile&, Index >&, DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TText = String >; TESASpec = void; DotDrawing = Tag]' 101 | write(iter, parentEdgeLabel(it)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:45:17: required from 'void SEQAN_TEST_test_index_drawing_esa_dot() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 45 | writeRecords(sstream, stree, seqan::DotDrawing()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:80:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 15%] Linking CXX executable ../../bin/test_index_sa_bwtwalk cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_sa_bwtwalk.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -o ../../bin/test_index_sa_bwtwalk -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Built target test_index_sa_bwtwalk make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Building CXX object tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -MF CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o.d -o CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: In copy constructor 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]', inlined from 'void seqan::SEQAN_TEST_testShapes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_shapes.h:130:14: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:285:26: warning: 'shapeB.seqan::Shape, seqan::GappedShape > >::hValue' may be used uninitialized [-Wmaybe-uninitialized] 285 | hValue(other.hValue) {} | ~~~~~~^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp:50: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_shapes.h: In function 'void seqan::SEQAN_TEST_testShapes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_shapes.h:129:30: note: 'shapeB' declared here 129 | Shape shapeB(pattern); | ^~~~~~ [ 16%] Linking CXX executable ../../bin/test_index_shapes cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_shapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -o ../../bin/test_index_shapes -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_shapes make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm_sparse_string.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -MF CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o.d -o CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_sparse_string.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/reduced_aminoacid.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 16%] Linking CXX executable ../../bin/test_index_drawing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_drawing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -o ../../bin/test_index_drawing -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_drawing make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_base.dir/test_index_base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_base.dir/test_index_base.cpp.o -MF CMakeFiles/test_index_base.dir/test_index_base.cpp.o.d -o CMakeFiles/test_index_base.dir/test_index_base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_sparse_string.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm_sparse_string.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/random:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 16%] Linking CXX executable ../../bin/test_index_fm_sparse_string cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_sparse_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -o ../../bin/test_index_fm_sparse_string -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_fm_sparse_string make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -MF CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o.d -o CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Tag >; TValue = String, Packed<> >; typename Value::Type = String, Packed<> >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = String, Packed<> >; TValue2 = String, Packed<> >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = String, Packed<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String, Packed<> >; typename Reference > >::Type = String, Packed<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(Index&, FibreText) [with TText = String, Packed<> >; TSpec = FMIndex<>; typename Fibre, const Tag >::Type = String, Packed<> >; FibreText = const Tag]' 786 | return value(index.text); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:288:19: required from 'void seqan::clear(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 288 | clear(getFibre(index, FibreText())); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:107:10: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 107 | clear(this->index); | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Tag >; TValue = String, Packed<> >; typename Value::Type = String, Packed<> >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = String, Packed<> >; TValue2 = String, Packed<> >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = String, Packed<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String, Packed<> >; typename Reference > >::Type = String, Packed<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(Index&, FibreText) [with TText = String, Packed<> >; TSpec = FMIndex<>; typename Fibre, const Tag >::Type = String, Packed<> >; FibreText = const Tag]' 786 | return value(index.text); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:288:19: required from 'void seqan::clear(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 288 | clear(getFibre(index, FibreText())); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:107:10: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 107 | clear(this->index); | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; unsigned int m = 3; TPack = seqan::Tag]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, Source<> >, Caster >, Sampler<3> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, Source<> >, Caster >, Sampler<3> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, Source<> >, Caster >, Sampler<3> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:241:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:203:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 203 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 3 into destination object 'seqan::Tuple >::i' of size 3 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ In member function 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; unsigned int m = 3; TPack = seqan::Tag]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, Source<> >, Caster >, Sampler<3> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, Source<> >, Caster >, Sampler<3> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, Source<> >, Caster >, Sampler<3> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:241:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:182:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 182 | outRef->i2.i[skipped++] = *in; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 3 into destination object 'seqan::Tuple >::i' of size 3 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = FMIndexConfig]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 103 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here 101 | SEQAN_TYPED_TEST(IndexTest, OpenSave) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Alloc<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String, Alloc<> >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet > >; TSpec = void; TConfig = SmallWTFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(Index >&) [with TText = String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' 469 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' 714 | indexCreate(this->index); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here 709 | void setUp() | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ [ 16%] Linking CXX executable ../../bin/test_index_creation cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_creation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -o ../../bin/test_index_creation -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_creation make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -MF CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o.d -o CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Packed<> >; TSpec = Owner >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:105:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Packed<> >; TSpec = Owner >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ [ 16%] Linking CXX executable ../../bin/test_index_fm_rank_dictionary cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_rank_dictionary.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -o ../../bin/test_index_fm_rank_dictionary -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 16%] Built target test_index_fm_rank_dictionary make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Alloc<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 16%] Building CXX object tests/index/CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -MF CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o.d -o CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Alloc<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Owner > >; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::BidirectionalIndex > > >; TText = seqan::String; TPattern = seqan::String]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::BidirectionalIndex > > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:198:35: required from 'void BidirectionalFMIndexTest__SearchInStringSet::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 198 | testBidirectionalIndex(index, stringSet, revStringSet, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:166:1: required from here 166 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:103:13: required from 'bool testBidirectionalIndex(TBiFMIndex&, TText&, TText&, TPattern&) [with TBiFMIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >; TText = seqan::String, seqan::Alloc<> >; TPattern = seqan::String, seqan::Alloc<> >]' 103 | TFMIter itFwd(indexFwd); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:161:31: required from 'void BidirectionalFMIndexTest__SearchInString::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 161 | testBidirectionalIndex(index, text, revText, pattern); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:142:1: required from here 142 | SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Tag >; TValue = String, Packed<> >; typename Value::Type = String, Packed<> >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = String, Packed<> >; TValue2 = String, Packed<> >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = String, Packed<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String, Packed<> >; typename Reference > >::Type = String, Packed<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:436:35: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 436 | TText const & text = indexText(index); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Tag >; TValue = String, Packed<> >; typename Value::Type = String, Packed<> >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = String, Packed<> >; TValue2 = String, Packed<> >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = String, Packed<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String, Packed<> >; typename Reference > >::Type = String, Packed<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:436:35: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 436 | TText const & text = indexText(index); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 16%] Linking CXX executable ../../bin/test_index_crosscompare_dna /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -o ../../bin/test_index_crosscompare_dna -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_crosscompare_dna make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_view.dir/test_index_view.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_view.dir/test_index_view.cpp.o -MF CMakeFiles/test_index_view.dir/test_index_view.cpp.o.d -o CMakeFiles/test_index_view.dir/test_index_view.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: required from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 105 | typename TestFixture::TIter it(this->index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:103:1: required from here 103 | SEQAN_TYPED_TEST(TopDownIndexIteratorTest, GoDown) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:233: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_vstree_factory.h: In instantiation of 'typename seqan::View > > > > >::Type seqan::view(Factory > > > >&) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder; typename View > > > > >::Type = Factory >, void>, IndexSa<> >, VSTree > > >, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:62:37: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 62 | TTFactoryView factoryView = view(factory); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_vstree_factory.h:237:23: warning: implicitly-declared 'constexpr seqan::Index >, void>, seqan::IndexSa<> >& seqan::Index >, void>, seqan::IndexSa<> >::operator=(const seqan::Index >, void>, seqan::IndexSa<> >&)' is deprecated [-Wdeprecated-copy] 237 | host(factoryView) = view(_host(factory, typename IsView::Type())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:142: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index >, void>, seqan::IndexSa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::ContainerView >, void>; TSpec = void]' 88 | Index(Index const & other) : | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = String >; TIndexSpec = void; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:64:11: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 64 | TIter it1(index); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index >, void>, IndexSa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = ContainerView >, void>; TIndexSpec = void; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, void>, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index >, void>, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_vstree_factory.h:314:58: required from 'seqan::Iter > > > seqan::getObject(Factory > > > >&, TId) [with TIndex = Index >, void>, IndexSa<> >; TSpec = Preorder; TId = unsigned int]' 314 | Iter > > > it(_host(factory, typename IsView::Type())); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:63:30: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 63 | TIterView it2 = getObject(factoryView, 0u); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = String >; TIndexSpec = void; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:64:11: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 64 | TIter it1(index); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:73:15: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 73 | goNext(it1); | ~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, void>, IndexSa<> >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, void>, IndexSa<> >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index >, void>, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index >, void>, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index >, void>, IndexSa<> >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:74:15: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 74 | goNext(it2); | ~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexSa<> >; TSource = Index >, IndexSa<> >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexSa<> >; TValue2 = Index >, IndexSa<> >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexSa<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexSa<> >; typename Reference > >::Type = Index >, IndexSa<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_vstree_factory.h:192:17: required from 'typename seqan::Host > > >::Type& seqan::_host(Factory > >&, const False&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown >; typename Host > > >::Type = Index >, IndexSa<> >]' 192 | return value(factory._index); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_vstree_factory.h:237:35: required from 'typename seqan::View > > > > >::Type seqan::view(Factory > > > >&) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder; typename View > > > > >::Type = Factory >, void>, IndexSa<> >, VSTree > > >, void>]' 237 | host(factoryView) = view(_host(factory, typename IsView::Type())); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:62:37: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 62 | TTFactoryView factoryView = view(factory); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexSa<> >& seqan::Index >, seqan::IndexSa<> >::operator=(const seqan::Index >, seqan::IndexSa<> >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index >, seqan::IndexSa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 88 | Index(Index const & other) : | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, void>, IndexSa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, void>, IndexSa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = ContainerView >, void>; TIndexSpec = void; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, void>, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index >, void>, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_vstree_factory.h:314:58: required from 'seqan::Iter > > > seqan::getObject(Factory > > > >&, TId) [with TIndex = Index >, void>, IndexSa<> >; TSpec = Preorder; TId = unsigned int]' 314 | Iter > > > it(_host(factory, typename IsView::Type())); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:63:30: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 63 | TIterView it2 = getObject(factoryView, 0u); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::ContainerView >, void>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::ContainerView >, void>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:68:9: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::ContainerView >, void>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::ContainerView >, void>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:68:9: required from 'void compareTreeIterators(TIndex&, TIndexView&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TIndexView = seqan::Index >, void>, seqan::IndexSa<> >]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:147:25: required from 'void SEQAN_TEST_test_index_view_basic() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 147 | compareTreeIterators(index, indexView); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 16%] Linking CXX executable ../../bin/test_index_view cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_view.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_view.dir/test_index_view.cpp.o -o ../../bin/test_index_view -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_view make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -MF CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o.d -o CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:220: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(TIndex&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 87 | clear(*this); | ~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:9: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 62 | finder(TBase::index) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 354 | SEQAN_TEST_NAME_(testCaseName, testName)(){} \ | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' 250 | return TypedTestFactory_::make(testCaseName, testName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 364 | >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(TIndex&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 87 | clear(*this); | ~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:9: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 62 | finder(TBase::index) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 354 | SEQAN_TEST_NAME_(testCaseName, testName)(){} \ | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' 250 | return TypedTestFactory_::make(testCaseName, testName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 364 | >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(TIndex&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 87 | clear(*this); | ~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:9: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 62 | finder(TBase::index) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 354 | SEQAN_TEST_NAME_(testCaseName, testName)(){} \ | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' 250 | return TypedTestFactory_::make(testCaseName, testName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 364 | >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(TIndex&) [with TText = seqan::String >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index >, seqan::FMIndex<> >]' 87 | clear(*this); | ~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:9: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index >, seqan::FMIndex<> >]' 62 | finder(TBase::index) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 354 | SEQAN_TEST_NAME_(testCaseName, testName)(){} \ | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' 250 | return TypedTestFactory_::make(testCaseName, testName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 364 | >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(TIndex&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 87 | clear(*this); | ~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:9: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 62 | finder(TBase::index) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 354 | SEQAN_TEST_NAME_(testCaseName, testName)(){} \ | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' 250 | return TypedTestFactory_::make(testCaseName, testName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 364 | >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(TIndex&) [with TText = seqan::StringSet > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index > >, seqan::FMIndex<> >]' 87 | clear(*this); | ~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:9: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index > >, seqan::FMIndex<> >]' 62 | finder(TBase::index) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 354 | SEQAN_TEST_NAME_(testCaseName, testName)(){} \ | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' 250 | return TypedTestFactory_::make(testCaseName, testName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 364 | >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:171: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: warning: implicitly-declared 'constexpr seqan::Segment > > >, seqan::PrefixSegment>::Segment(const seqan::Segment > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment > > >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > > >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne, seqan::Alloc<> > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:75:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 75 | SEQAN_ASSERT(find(this->finder, "A")); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = std::vector >; TIndexSpec = void; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:98:40: required from 'void IndexFinderTest__StdVector::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 98 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:93:1: required from here 93 | SEQAN_TYPED_TEST(IndexFinderTest, StdVector) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:142: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, IndexSa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = std::__cxx11::basic_string; TIndexSpec = void; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:90:40: required from 'void IndexFinderTest__StdString::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 90 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:85:1: required from here 85 | SEQAN_TYPED_TEST(IndexFinderTest, StdString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = std::vector >; TIndexSpec = void; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:98:40: required from 'void IndexFinderTest__StdVector::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 98 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:93:1: required from here 93 | SEQAN_TYPED_TEST(IndexFinderTest, StdVector) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, IndexSa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, IndexSa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = std::__cxx11::basic_string; TIndexSpec = void; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:90:40: required from 'void IndexFinderTest__StdString::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 90 | Iterator >::Type iter(index); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:85:1: required from here 85 | SEQAN_TYPED_TEST(IndexFinderTest, StdString) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = ConcatenatorManyToOne > > >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment > > >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment > > >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > > >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>; FinderSTree = const Tag]' 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > > >, seqan::PrefixSegment>::Segment(const seqan::Segment > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = ConcatenatorManyToOne, Alloc<> > > >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Alloc<> > > >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>; FinderSTree = const Tag]' 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne, seqan::Alloc<> > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>; FinderSTree = const Tag]' 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Packed<> >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Packed<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Packed<> >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Packed<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:409:48: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>; FinderSTree = const Tag]' 409 | ModifiedString revPattern(pattern); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > > >, seqan::PrefixSegment>; TIterator = seqan::Iter > >, seqan::ConcatVirtual<> >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString > > >, PrefixSegment>, Tag >; TSize = unsigned int]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString > > >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString > > >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment > > >, seqan::PrefixSegment>::Segment(const seqan::Segment > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> > >, seqan::ConcatVirtual<> >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >; TSize = unsigned int]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Alloc<> > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Alloc<> > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne, seqan::Alloc<> > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::PrefixSegment>; TIterator = char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString >, PrefixSegment>, Tag >; TSize = unsigned int]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Packed<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Packed<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Alloc<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Alloc<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Alloc<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment > > >, PrefixSegment>; typename Iterator >::Type = Iter > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment > > >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = const Segment > > >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:356:33: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString > > >, PrefixSegment>, Tag >; TSize = unsigned int]' 356 | TStringIter stringIt = begin(string, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString > > >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString > > >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment > > >, seqan::PrefixSegment>::Segment(const seqan::Segment > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > > >, seqan::PrefixSegment>; TIterator = seqan::Iter > >, seqan::ConcatVirtual<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > > >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > > >, PrefixSegment>; typename Iterator >::Type = Iter > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > > >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >; typename RemoveReference::Type = Segment > > >, PrefixSegment>; typename Iterator >::Type = Iter > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = const Segment > > >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator > > >, PrefixSegment>, AdaptorIterator > >, ConcatVirtual<> >, Tag > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:357:32: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString > > >, PrefixSegment>, Tag >; TSize = unsigned int]' 357 | TStringIter stringEnd = end(string, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString > > >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString > > >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > > >, seqan::PrefixSegment>::Segment(const seqan::Segment > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > > >, seqan::PrefixSegment>; TIterator = seqan::Iter > >, seqan::ConcatVirtual<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > > >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> > > >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> > > >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = const Segment, Alloc<> > > >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:356:33: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >; TSize = unsigned int]' 356 | TStringIter stringIt = begin(string, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Alloc<> > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Alloc<> > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne, seqan::Alloc<> > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> > >, seqan::ConcatVirtual<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> > > >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> > > >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> > > >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = const Segment, Alloc<> > > >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> > > >, PrefixSegment>, AdaptorIterator, Alloc<> > >, ConcatVirtual<> >, Tag > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:357:32: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >; TSize = unsigned int]' 357 | TStringIter stringEnd = end(string, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Alloc<> > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Alloc<> > >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> > > >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> > > >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ConcatenatorManyToOne, seqan::Alloc<> > > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> > >, seqan::ConcatVirtual<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> > > >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = const Segment >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator >, PrefixSegment>, AdaptorIterator > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:356:33: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString >, PrefixSegment>, Tag >; TSize = unsigned int]' 356 | TStringIter stringIt = begin(string, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::PrefixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, PrefixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, PrefixSegment>; typename Iterator >::Type = Iter >, PrefixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = const Segment >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator >, PrefixSegment>, AdaptorIterator > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:357:32: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString >, PrefixSegment>, Tag >; TSize = unsigned int]' 357 | TStringIter stringEnd = end(string, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::PrefixSegment>::Segment(const seqan::Segment >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::PrefixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Packed<> >, PrefixSegment>; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Packed<> >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = const Segment, Packed<> >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:356:33: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Packed<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 356 | TStringIter stringIt = begin(string, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Packed<> >, PrefixSegment>; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Packed<> >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; typename RemoveReference::Type = Segment, Packed<> >, PrefixSegment>; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = const Segment, Packed<> >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:357:32: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Packed<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 357 | TStringIter stringEnd = end(string, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Packed<> >, PrefixSegment>; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Packed<> >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = const Segment, Packed<> >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:356:33: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Packed<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 356 | TStringIter stringIt = begin(string, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Packed<> >, PrefixSegment>; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Packed<> >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >; typename RemoveReference::Type = Segment, Packed<> >, PrefixSegment>; typename Iterator >::Type = Iter, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = const Segment, Packed<> >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Packed<> >, PrefixSegment>, AdaptorIterator, Packed<> >, Packed<> >, Tag > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:357:32: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Packed<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 357 | TStringIter stringEnd = end(string, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Packed<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Packed<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Packed<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Packed<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, PrefixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = const Segment, Alloc<> >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:356:33: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Alloc<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 356 | TStringIter stringIt = begin(string, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Alloc<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Alloc<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = const Segment, Alloc<> >, PrefixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, PrefixSegment>, AdaptorIterator*, Tag > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:357:32: required from 'bool seqan::_goDownString(Iter >, VSTree > >&, const TString&, TSize&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig; TSpec = EmptyEdges; TString = ModifiedString, Alloc<> >, PrefixSegment>, Tag >; TSize = unsigned int]' 357 | TStringIter stringEnd = end(string, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index, Alloc<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> >, PrefixSegment>, Tag >]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index, Alloc<> >, FMIndex<> >; TSpec = EmptyEdges; TObject = ModifiedString, Alloc<> >, PrefixSegment>, Tag >]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:411:15: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Alloc<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>; FinderSTree = const Tag]' 411 | if (goDown(it, revPattern)) | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = Segment, Alloc<> >, PrefixSegment>]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:74:5: required from 'void IndexFinderTest__FindFirstChar::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' 74 | SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here 72 | SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexEsa<> >; TSource = Index >, IndexEsa<> >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexEsa<> >; TValue2 = Index >, IndexEsa<> >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexEsa<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexEsa<> >; typename Reference > >::Type = Index >, IndexEsa<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index >, IndexEsa<> >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder >, IndexEsa<> >, const Tag >; typename Parameter_::Type>::Type = Index >, IndexEsa<> >&; typename Haystack::Type = Index >, IndexEsa<> >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [7]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::IndexEsa<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexEsa<> >& seqan::Index >, seqan::IndexEsa<> >::operator=(const seqan::Index >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexSa<> >; TSource = Index >, IndexSa<> >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexSa<> >; TValue2 = Index >, IndexSa<> >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexSa<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexSa<> >; typename Reference > >::Type = Index >, IndexSa<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexSa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index >, IndexSa<> >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder >, IndexSa<> >, const Tag >; typename Parameter_::Type>::Type = Index >, IndexSa<> >&; typename Haystack::Type = Index >, IndexSa<> >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = String >; TSpec = IndexSa<>; TSpecFinder = const Tag; TPattern = char [7]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = IndexSa<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::IndexSa<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexSa<> >& seqan::Index >, seqan::IndexSa<> >::operator=(const seqan::Index >, seqan::IndexSa<> >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index >, seqan::IndexSa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 88 | Index(Index const & other) : | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20, inlined from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Tag >; TValue = String, Packed<> >; typename Value::Type = String, Packed<> >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = String, Packed<> >; TValue2 = String, Packed<> >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = String, Packed<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String, Packed<> >; typename Reference > >::Type = String, Packed<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed<> >, Tag >; TValue = String, Packed<> >; typename Value::Type = String, Packed<> >]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = String, Packed<> >; TValue2 = String, Packed<> >]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = String, Packed<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String, Packed<> >; typename Reference > >::Type = String, Packed<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Packed<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet, Alloc<> > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Packed<> >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = StringSet > >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [7]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [7]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:82:9: required from 'void IndexFinderTest__DefaultFinder::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' 82 | find(finder, "needle"); | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:78:1: required from here 78 | SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ [ 17%] Linking CXX executable ../../bin/test_index_fm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -o ../../bin/test_index_fm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_fm make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/index/CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -MF CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o.d -o CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = String >; TIndexSpec = void; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1348:19: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1348 | TTextIterator textIt(text); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:142: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, IndexSa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = TopDown<>]' 311 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, IndexSa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = String >; TIndexSpec = void; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1348:19: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1348 | TTextIterator textIt(text); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, IndexSa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, IndexSa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = TopDown<>]' 312 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index >, IndexSa<> >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1353:10: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1353 | _find(finder, delegate, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >; TIndexSpec = void; TSpec = Preorder; TDfsOrder = Preorder_]' 377 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, IndexSa<> >; TSpec = Preorder]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 527 | return goDown(back(finder.textStack)) && goDown(back(finder.patternStack)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' 432 | if (_moveIteratorsDown(finder, TStage())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1311 | if (_pushState(finder, TStage())) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1353:10: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1353 | _find(finder, delegate, StageInitial_()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexSa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TIndexSpec = void]' 195 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1349:22: required from 'void seqan::_find(Finder_, Index, Backtracking >&, Index&, Index&, TValue, TDelegate&) [with TText = String >; TTextIndexSpec = IndexSa<>; TPattern = StringSet > >; TPatternIndexSpec = IndexSa<>; TDistance = Tag; TSpec = Tag; TValue = int; TDelegate = FinderTester >, IndexSa<> >, Index > >, IndexSa<> >, Backtracking > >]' 1349 | TPatternIterator patternIt(pattern); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.h:210:10: required from 'void SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 210 | _find(finder, textIndex, patternIndex, 1, tester); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 17%] Linking CXX executable ../../bin/test_index_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_base.dir/test_index_base.cpp.o -o ../../bin/test_index_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_base make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/index/CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -MF CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o.d -o CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:301:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 301 | struct IdentityMap : public std::unary_function< TValue, TValue > { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:306:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 306 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test():: [with auto:5 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' 476 | for (auto occ : getOccurrences(iter)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDir = Tag; TDistanceTag = Tag; uint32_t = unsigned int; uint8_t = unsigned char]' 509 | delegate(iter, needle, errors); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDistanceTag = Tag]' 556 | _optimalSearchScheme(delegate, it, needle, s.startPos, s.startPos + 1, 0, s, 0, Rev(), TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; unsigned int N = 3; TDistanceTag = Tag]' 571 | _optimalSearchScheme(delegate, it, needle, s, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 1; unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 592 | _optimalSearchScheme(delegate, it, needle, scheme, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, Index >&, const StringSet&, const TDistanceTag&, const TParallelTag&) [with unsigned int minErrors = 1; unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TNeedle = String, Alloc<> >; TStringSetSpec = Owner<>; TDistanceTag = Tag; TParallelTag = Tag]' 617 | find(delegate, index, needle, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 481 | find<1, 2>(delegate, index, needles, EditDistance(), Serial()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 497 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test():: [with auto:5 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' 476 | for (auto occ : getOccurrences(iter)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDir = Tag; TDistanceTag = Tag; uint32_t = unsigned int; uint8_t = unsigned char]' 509 | delegate(iter, needle, errors); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDistanceTag = Tag]' 556 | _optimalSearchScheme(delegate, it, needle, s.startPos, s.startPos + 1, 0, s, 0, Rev(), TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; unsigned int N = 3; TDistanceTag = Tag]' 571 | _optimalSearchScheme(delegate, it, needle, s, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 1; unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 592 | _optimalSearchScheme(delegate, it, needle, scheme, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, Index >&, const StringSet&, const TDistanceTag&, const TParallelTag&) [with unsigned int minErrors = 1; unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TNeedle = String, Alloc<> >; TStringSetSpec = Owner<>; TDistanceTag = Tag; TParallelTag = Tag]' 617 | find(delegate, index, needle, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 481 | find<1, 2>(delegate, index, needles, EditDistance(), Serial()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const CompressedSA, Alloc<> >, void, FMIndexConfig >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]' 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDistanceTag = Tag]' 556 | _optimalSearchScheme(delegate, it, needle, s.startPos, s.startPos + 1, 0, s, 0, Rev(), TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; unsigned int N = 3; TDistanceTag = Tag]' 571 | _optimalSearchScheme(delegate, it, needle, s, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 1; unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 592 | _optimalSearchScheme(delegate, it, needle, scheme, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, Index >&, const StringSet&, const TDistanceTag&, const TParallelTag&) [with unsigned int minErrors = 1; unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TNeedle = String, Alloc<> >; TStringSetSpec = Owner<>; TDistanceTag = Tag; TParallelTag = Tag]' 617 | find(delegate, index, needle, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 481 | find<1, 2>(delegate, index, needles, EditDistance(), Serial()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Alloc<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with unsigned int nbrBlocks = 1; unsigned int N = 1; TDistanceTag = seqan::Tag]' 395 | TIter it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 420 | testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:68: In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = unsigned char; unsigned int _Nm = 1]', inlined from 'void seqan::_optimalSearchSchemeChildren(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag; TDistanceTag = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:395:63, inlined from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag; TDistanceTag = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:540:37: /usr/include/c++/14/array:219:24: warning: array subscript 4294967295 is above array bounds of 'std::__array_traits::_Type' {aka 'const unsigned char [1]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag; TDistanceTag = Tag]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = unsigned char; unsigned int _Nm = 1]', inlined from 'void seqan::_optimalSearchSchemeChildren(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag; TDistanceTag = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:395:63, inlined from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag; TDistanceTag = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:540:37: /usr/include/c++/14/array:219:24: warning: array subscript 4294967295 is above array bounds of 'std::__array_traits::_Type' {aka 'const unsigned char [1]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag; TDistanceTag = Tag]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22, inlined from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37, inlined from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34, inlined from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22, inlined from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27, inlined from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17, inlined from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42, inlined from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' may be used uninitialized [-Wmaybe-uninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In member function 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22, inlined from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37, inlined from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34, inlined from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String, Packed<> >; TSpec = void; TConfig = FMIndexConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22, inlined from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Packed<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27, inlined from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Packed<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17, inlined from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42, inlined from 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:105:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' may be used uninitialized [-Wmaybe-uninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In member function 'void TopDownIndexIteratorTest__GoDown::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = unsigned char; unsigned int _Nm = 1]', inlined from 'void seqan::_optimalSearchSchemeDeletion(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:322:57: /usr/include/c++/14/array:219:24: warning: array subscript 4294967295 is above array bounds of 'std::__array_traits::_Type' {aka 'const unsigned char [1]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::_optimalSearchSchemeDeletion(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = unsigned char; unsigned int _Nm = 1]', inlined from 'void seqan::_optimalSearchSchemeDeletion(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:322:57: /usr/include/c++/14/array:219:24: warning: array subscript 4294967295 is above array bounds of 'std::__array_traits::_Type' {aka 'const unsigned char [1]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::_optimalSearchSchemeDeletion(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&) [with TDelegate = testOptimalSearch, seqan::Alloc<> >, seqan::FMIndex >, seqan::Preorder, 1, seqan::Tag >(seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > > >, seqan::VSTree > >, const seqan::OptimalSearch<1>&, const seqan::OptimalSearch<1>&, unsigned int, const std::vector&, time_t, const seqan::Tag&)::, Alloc<> >&, uint8_t)>; TText = String, Alloc<> >; TIndex = FMIndex >; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 1; TDir = Tag]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ [ 17%] Linking CXX executable ../../bin/test_index_vstree cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_vstree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -o ../../bin/test_index_vstree -lrt -lz -lbz2 [ 17%] Linking CXX executable ../../bin/test_find_backtracking cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_backtracking.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -o ../../bin/test_find_backtracking -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_vstree make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/index/CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -MF CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o.d -o CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_find_backtracking make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/index/CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/index/CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -MF CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o.d -o CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; TSource = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; TValue2 = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; typename Reference > >::Type = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:740:41: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' 740 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> > >, IndexQGram, UngappedShape<10> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp:28:16: required from 'void SEQAN_TEST_test_index_swift_find_empty_pattern() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 28 | while (find(swiftFinder, swiftPattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp:34:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<10> >]' 143 | Index(Index const &other): | ^~~~~ [ 17%] Linking CXX executable ../../bin/test_index_repeats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_repeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -o ../../bin/test_index_repeats -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_repeats make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/journaled_set/CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/journaled_set/CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -MF CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o.d -o CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp [ 17%] Linking CXX executable ../../bin/test_index_swift cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -o ../../bin/test_index_swift -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_swift make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -MF CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o.d -o CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_basic_observable.cpp [ 17%] Linking CXX executable ../../bin/test_find2_index_approx cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find2_index_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -o ../../bin/test_find2_index_approx -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_find2_index_approx make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -MF CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o.d -o CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_basic_observable.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_basic_observable.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_basic_observable.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Linking CXX executable ../../bin/test_index_bifm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_bifm.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -o ../../bin/test_index_bifm -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_bifm make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -MF CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o.d -o CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::basic_ostream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::String, seqan::SortedArray> >; T2 = seqan::String >]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::String, seqan::SortedArray> >; T2 = seqan::String >]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.h:288:5: required from 'void SEQAN_TEST_test_journaled_set_assign_value() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::basic_ostream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::String, seqan::SortedArray> >; T2 = seqan::String >]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::String, seqan::SortedArray> >; T2 = seqan::String >]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.h:288:5: required from 'void SEQAN_TEST_test_journaled_set_assign_value() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Linking CXX executable ../../bin/test_basic_observable cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_observable.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -o ../../bin/test_basic_observable -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_basic_observable make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o -MF CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o.d -o CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(TDeltaPos, TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = unsigned int; TStorePos = unsigned int; TDeltaPos = unsigned int; TDeltaRecord = seqan::Pair >; TCoverage = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:150:5: required from 'void SEQAN_TEST_test_journaled_string_tree_insert() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 150 | SEQAN_ASSERT_EQ(*it, TEntry(2, TRecord(DELTA_TYPE_DEL, 0), cov, DeltaEndType::IS_LEFT)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:114:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 114 | deltaCoverage(_coverage), | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13, inlined from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1369:42, inlined from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1376:22, inlined from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:317:20, inlined from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'seqan::Tuple >::i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(String&, TPosition, const TValue&, Tag) [with TTargetValue = DeltaMapEntry; TTargetSpec = Alloc<>; TPosition = int; TValue = DeltaMapEntry; TExpand = TagGenerous_]' 1410 | InsertValueToString_ >::insertValue_(me, pos, _value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = String, Alloc<> >&; TPosition = int; TValue = DeltaMapEntry]' 1010 | insertValue(std::forward(me), pos, std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' 506 | insertValue(mapIt._mapPtr->_entries, mapIt - begin(*mapIt._mapPtr, Standard()), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | TEntry(deltaPos, TDeltaRecord(selectDeltaType(deltaType), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | addDeltaValue(mapIt._mapPtr->_deltaStore, deltaValue, deltaType)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | coverage, | ~~~~~~~~~ 510 | DeltaEndType::IS_BOTH)); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = char; TIds = String >; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:142:11: required from 'void SEQAN_TEST_test_journaled_string_tree_insert() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 142 | insert(jst, 5, 'C', ids, DeltaTypeSnp()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = DeltaMapEntry*; TParam = DeltaMapEntry]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = DeltaMapEntry*; TSource1 = DeltaMapEntry*; TSource2 = DeltaMapEntry*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = DeltaMapEntry]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = DeltaMapEntry]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = unsigned int]' 1697 | _reserveStorage(seq, new_capacity, tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' 123 | reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void SEQAN_TEST_test_journaled_string_tree_host() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 110 | class DeltaMap | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 17%] Linking CXX executable ../../bin/test_journaled_set cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_set.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(TDeltaPos, TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = unsigned int; TStorePos = unsigned int; TDeltaPos = unsigned int; TDeltaRecord = seqan::Pair >; TCoverage = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.h:114:5: required from 'void SEQAN_TEST_test_delta_map_insert() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 114 | SEQAN_ASSERT_EQ(deltaMap._entries[0], TEntry(0, TRecord(DELTA_TYPE_SNP, 1), cov1, DeltaEndType::IS_BOTH)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:114:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 114 | deltaCoverage(_coverage), | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -o ../../bin/test_journaled_set -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_journaled_set make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ [ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -MF CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o.d -o CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(String&, TPosition, const TValue&, Tag) [with TTargetValue = DeltaMapEntry; TTargetSpec = Alloc<>; TPosition = int; TValue = DeltaMapEntry; TExpand = TagGenerous_]' 1410 | InsertValueToString_ >::insertValue_(me, pos, _value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = String, Alloc<> >&; TPosition = int; TValue = DeltaMapEntry]' 1010 | insertValue(std::forward(me), pos, std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap >; TDeltaPos = int; TDeltaValue = seqan::SimpleType; TCoverage = seqan::String >; TTag = seqan::Tag]' 506 | insertValue(mapIt._mapPtr->_entries, mapIt - begin(*mapIt._mapPtr, Standard()), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | TEntry(deltaPos, TDeltaRecord(selectDeltaType(deltaType), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | addDeltaValue(mapIt._mapPtr->_deltaStore, deltaValue, deltaType)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | coverage, | ~~~~~~~~~ 510 | DeltaEndType::IS_BOTH)); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = TestDeltaMapConfig; TSpec = Tag; TDeltaPos = int; TDeltaValue = SimpleType; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.h:108:11: required from 'void SEQAN_TEST_test_delta_map_insert() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 108 | insert(deltaMap, 2, deltaMap._deltaStore._snpData[0], cov2, DeltaTypeSnp()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = DeltaMapEntry*; TParam = DeltaMapEntry]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = DeltaMapEntry*; TSource1 = DeltaMapEntry*; TSource2 = DeltaMapEntry*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = DeltaMapEntry]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = DeltaMapEntry]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = unsigned int]' 1697 | _reserveStorage(seq, new_capacity, tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' 123 | reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void SEQAN_TEST_test_delta_map_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 110 | class DeltaMap | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp:68:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In constructor 'seqan::Iter >::Iter() [with TContainer = const seqan::String, seqan::Packed<> >; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag]', inlined from 'seqan::Pipe >::Pipe(const TInput&) [with TInput = seqan::String, seqan::Packed<> >; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:74:24, inlined from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:67:22: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '*(unsigned char (*)[5])((char*)& + offsetof(seqan::Iter, seqan::Packed > >, seqan::Packed > >,seqan::Iter, seqan::Packed > >, seqan::Packed > >::data_iterator))' is used uninitialized [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Packed<> >; TAlgSpec = Skew7]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:25: note: '' declared here 102 | data_iterator = TIterator(); | ^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h: In instantiation of 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:50:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 50 | class TraverserImpl > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:101:20: note: synthesized method 'seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >::TraverserImpl(const seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >&)' first required here 101 | TTraverser travCopy(traverser); | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 390 | return impl::positionReference(me); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:357:36: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 357 | auto const & pos = position(sub); | ~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 968 | auto tmp = impl::baseNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 392 | return impl::positionBranch(me); | ~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:357:36: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 357 | auto const & pos = position(sub); | ~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 999 | auto tmp = impl::activeNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = int; TObserver = std::tuple<>; TProxySelector = SelectValidProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:506:12: required from 'void seqan::advance(TraverserImpl >&, TSize) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = int]' 506 | advance(me, stepSize, observer, SelectValidProxy()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:288:16: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_at_end() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 288 | advance(test, 1); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:50:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here 830 | auto child = *parentPtr; | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(TDeltaPos, TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = unsigned int; TStorePos = unsigned int; TDeltaPos = unsigned int; TDeltaRecord = seqan::Pair >; TCoverage = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:530:17: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const seqan::DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' 530 | TEntry(deltaPos, TDeltaRecord(DELTA_TYPE_DEL, storePos), coverage, endType)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = String >; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:121:15: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' 121 | insert(jst, 1, 3, ids, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | TJst jst = JstMockGenerator::_createSimpleJst(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:114:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 114 | deltaCoverage(_coverage), | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(JstBuffer_&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 503 | impl::create(buffer); | ~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(JstBuffer_&, TJst&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 556 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' 902 | init(buffer(me), container(me)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = SelectFirstProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:353:9: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 353 | init(sub, observer, SelectFirstProxy()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 328 | f.setIt = jSetSplitter[jobId]; | ~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const seqan::SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = unsigned int; seqan::SelectValidProxy = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' 580 | child.proxyId = impl::selectProxy(child, Tag()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' 831 | if (impl::createBranch(it, *parentPtr, child, TProxySelector()) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = int; TObserver = std::tuple<>; TProxySelector = SelectValidProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:506:12: required from 'void seqan::advance(TraverserImpl >&, TSize) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = int]' 506 | advance(me, stepSize, observer, SelectValidProxy()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:288:16: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_at_end() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 288 | advance(test, 1); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:50:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 528 | auto tmp1 = node.coverage; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(String&, TPosition, const TValue&, Tag) [with TTargetValue = DeltaMapEntry; TTargetSpec = Alloc<>; TPosition = int; TValue = DeltaMapEntry; TExpand = TagGenerous_]' 1410 | InsertValueToString_ >::insertValue_(me, pos, _value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = String, Alloc<> >&; TPosition = int; TValue = DeltaMapEntry]' 1010 | insertValue(std::forward(me), pos, std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:529:16: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const seqan::DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' 529 | insertValue(mapIt._mapPtr->_entries, mapIt - begin(*mapIt._mapPtr, Standard()), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 | TEntry(deltaPos, TDeltaRecord(DELTA_TYPE_DEL, storePos), coverage, endType)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = String >; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:121:15: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' 121 | insert(jst, 1, 3, ids, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | TJst jst = JstMockGenerator::_createSimpleJst(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = JstTraversalNode, Alloc<> > > >*; TParam = JstTraversalNode, Alloc<> > > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(String >&, TValue&&, Tag) [with TTargetValue = JstTraversalNode, Alloc<> > > >; unsigned int SPACE = 4096; TValue = JstTraversalNode, Alloc<> > > >; TExpand = TagGenerous_]' 402 | valueConstruct(me.lastValue, std::forward(value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >, Block<> >&; TSource = JstTraversalNode, Alloc<> > > >]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple<>]' 175 | appendValue(impl::stack(me), std::forward(node)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' 926 | impl::pushNode(me, std::move(node), observer); // Push onto stack. | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = SelectFirstProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:353:9: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 353 | init(sub, observer, SelectFirstProxy()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = DeltaMapEntry*; TParam = DeltaMapEntry]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = DeltaMapEntry*; TSource1 = DeltaMapEntry*; TSource2 = DeltaMapEntry*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = DeltaMapEntry]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = DeltaMapEntry]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = unsigned int]' 1697 | _reserveStorage(seq, new_capacity, tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' 123 | reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' 110 | class DeltaMap | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 65 | TJst jst = JstMockGenerator::_createSimpleJst(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Linking CXX executable ../../bin/test_journaled_string_tree cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -o ../../bin/test_journaled_string_tree -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_journaled_string_tree make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object tests/map/CMakeFiles/test_map.dir/test_map.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/map/CMakeFiles/test_map.dir/test_map.cpp.o -MF CMakeFiles/test_map.dir/test_map.cpp.o.d -o CMakeFiles/test_map.dir/test_map.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map/test_map.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(TDeltaPos, TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = unsigned int; TStorePos = unsigned int; TDeltaPos = unsigned int; TDeltaRecord = seqan::Pair >; TCoverage = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:507:17: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' 507 | TEntry(deltaPos, TDeltaRecord(selectDeltaType(deltaType), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | addDeltaValue(mapIt._mapPtr->_deltaStore, deltaValue, deltaType)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | coverage, | ~~~~~~~~~ 510 | DeltaEndType::IS_BOTH)); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = char; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:15: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' 164 | insert(jst, 0, 'C', std::vector{1, 3, 5, 6, 7}, DeltaTypeSnp()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 82 | auto jst = JstMockGenerator::_createComplexJst(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:114:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 114 | deltaCoverage(_coverage), | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = unsigned int; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 290 | advance(traverser, steps, observer, TProxySelector()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 95 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here 830 | auto child = *parentPtr; | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 390 | return impl::positionReference(me); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:67:28: required from 'void TestHelperHitCollector_::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' 67 | auto pos = position(*travPtr); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = JstExtension, Alloc<> >, Tag > >; TCxtPosition = Tag; TTraverser = TraverserImpl, Alloc<> > >, JstTraversalSpec >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; decltype (impl::run(extension._derived, traverser, TCxtPosition()).first) = unsigned int]' 263 | delegate(); | ~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 289 | auto steps = run(algorithm, traverser, delegate); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 95 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 968 | auto tmp = impl::baseNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 392 | return impl::positionBranch(me); | ~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:67:28: required from 'void TestHelperHitCollector_::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' 67 | auto pos = position(*travPtr); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = JstExtension, Alloc<> >, Tag > >; TCxtPosition = Tag; TTraverser = TraverserImpl, Alloc<> > >, JstTraversalSpec >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; decltype (impl::run(extension._derived, traverser, TCxtPosition()).first) = unsigned int]' 263 | delegate(); | ~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 289 | auto steps = run(algorithm, traverser, delegate); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 95 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 999 | auto tmp = impl::activeNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(String&, TPosition, const TValue&, Tag) [with TTargetValue = DeltaMapEntry; TTargetSpec = Alloc<>; TPosition = int; TValue = DeltaMapEntry; TExpand = TagGenerous_]' 1410 | InsertValueToString_ >::insertValue_(me, pos, _value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = String, Alloc<> >&; TPosition = int; TValue = DeltaMapEntry]' 1010 | insertValue(std::forward(me), pos, std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' 506 | insertValue(mapIt._mapPtr->_entries, mapIt - begin(*mapIt._mapPtr, Standard()), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | TEntry(deltaPos, TDeltaRecord(selectDeltaType(deltaType), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | addDeltaValue(mapIt._mapPtr->_deltaStore, deltaValue, deltaType)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | coverage, | ~~~~~~~~~ 510 | DeltaEndType::IS_BOTH)); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = char; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:15: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' 164 | insert(jst, 0, 'C', std::vector{1, 3, 5, 6, 7}, DeltaTypeSnp()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 82 | auto jst = JstMockGenerator::_createComplexJst(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(JstBuffer_&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 503 | impl::create(buffer); | ~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(JstBuffer_&, TJst&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 556 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' 902 | init(buffer(me), container(me)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 282 | init(traverser, observer, TProxySelector()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 95 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 328 | f.setIt = jSetSplitter[jobId]; | ~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const seqan::SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = unsigned int; seqan::SelectValidProxy = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' 580 | child.proxyId = impl::selectProxy(child, Tag()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' 831 | if (impl::createBranch(it, *parentPtr, child, TProxySelector()) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = unsigned int; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 290 | advance(traverser, steps, observer, TProxySelector()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 95 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 528 | auto tmp1 = node.coverage; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = DeltaMapEntry*; TParam = DeltaMapEntry]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = DeltaMapEntry*; TSource1 = DeltaMapEntry*; TSource2 = DeltaMapEntry*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = DeltaMapEntry]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = DeltaMapEntry]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = unsigned int]' 1697 | _reserveStorage(seq, new_capacity, tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' 123 | reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' 110 | class DeltaMap | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 82 | auto jst = JstMockGenerator::_createComplexJst(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = JstTraversalNode, Alloc<> > > >*; TParam = JstTraversalNode, Alloc<> > > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(String >&, TValue&&, Tag) [with TTargetValue = JstTraversalNode, Alloc<> > > >; unsigned int SPACE = 4096; TValue = JstTraversalNode, Alloc<> > > >; TExpand = TagGenerous_]' 402 | valueConstruct(me.lastValue, std::forward(value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >, Block<> >&; TSource = JstTraversalNode, Alloc<> > > >]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' 175 | appendValue(impl::stack(me), std::forward(node)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' 926 | impl::pushNode(me, std::move(node), observer); // Push onto stack. | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 282 | init(traverser, observer, TProxySelector()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = TestHelperHitCollector_, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = unsigned int]' 95 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | _testFindJst(p, length(needle(p)), length(needle(p))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map/test_map_map.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map/test_map.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map/test_map.cpp:33: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map/test_map_map.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 18%] Linking CXX executable ../../bin/test_delta_map cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_delta_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -o ../../bin/test_delta_map -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Built target test_delta_map make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Building CXX object tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o -MF CMakeFiles/test_misc.dir/test_misc.cpp.o.d -o CMakeFiles/test_misc.dir/test_misc.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:33: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Linking CXX executable ../../bin/test_index_finder cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -o ../../bin/test_index_finder -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Built target test_index_finder make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Building CXX object tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o -MF CMakeFiles/test_modifier.dir/test_modifier.cpp.o.d -o CMakeFiles/test_modifier.dir/test_modifier.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = double]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = double]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = double; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:660:18: required from 'void seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_QueryAtBoundary() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 660 | findIntervals(resultstmp, tmpT, 20, 30); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:108:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2) [with TValue = int; TCargo = int; TValue2 = int]' 1502 | findIntervals(result, it.g, it.pm, query); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:460:22: required from 'void seqan::IntervalTreeTest_IntervalTree() [with TValue = int]' 460 | findIntervals(result, itree, query); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:669:39: required from 'void seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_IntervalTree__int() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 669 | IntervalTreeTest_IntervalTree(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::addInterval(TGraph&, TPropertyMap&, TInterval) [with TGraph = Graph > >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TInterval = IntervalAndCargo]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1363:16: required from 'void seqan::addInterval(IntervalTree&, TInterval) [with TValue = int; TCargo = int; TInterval = IntervalAndCargo]' 1363 | addInterval(itree.g, itree.pm, interval); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:613:20: required from 'void seqan::IntervalTreeTest_AddInterval() [with TValue = int]' 613 | addInterval(itree, intervals[4]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:687:38: required from 'void seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_AddInterval__int() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 687 | IntervalTreeTest_AddInterval(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:112:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1286:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1286 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1299:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1299 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1329:31: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1329 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1732:33: required from 'void seqan::findIntervalsExcludeTouching(String&, const IntervalTree&, TValue) [with TValue = int; TCargo = int]' 1732 | findIntervalsExcludeTouching(result, tree.g, tree.pm, query); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:628:37: required from 'void seqan::IntervalTreeTest_AddInterval() [with TValue = int]' 628 | findIntervalsExcludeTouching(result, itree, 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:687:38: required from 'void seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_AddInterval__int() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 687 | IntervalTreeTest_AddInterval(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:112:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = int; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:285:22: required from 'void seqan::IntervalTreeTest_FindIntervalsIntervals() [with TValue = int; TConstructSpec = const Tag]' 285 | findIntervals(result, itree, (TValue)10.0, (TValue)20.0); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc_interval_tree.h:723:64: required from 'void seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_FindIntervalsIntervals__int_ComputeCenter() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 723 | IntervalTreeTest_FindIntervalsIntervals(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:117:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ [ 18%] Linking CXX executable ../../bin/test_journaled_string_tree_traverser cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree_traverser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o -o ../../bin/test_journaled_string_tree_traverser -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Built target test_journaled_string_tree_traverser make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -MF CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o.d -o CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:255:28: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct LowerFunctor : std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:263:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 263 | struct CaesarFunctor : std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:42:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 42 | struct CaesarChiffre : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h: In instantiation of 'void SEQAN_TEST_test_modifier_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:105:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:119:30: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 119 | TInnerModifiedString modified(frag); | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h: In instantiation of 'void SEQAN_TEST_test_modifier_modified_string_cascade() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:108:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:215:30: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 215 | TInnerModifiedString inner(origInfix); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h: In instantiation of 'void SEQAN_TEST_test_modifier_modified_string_mod_view_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:114:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:318:30: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 318 | TInnerModifiedString modified(origInfix); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TFunctor = LowerFunctor; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:326:30: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 326 | TInnerModifiedString modified(origInfix); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TFunctor = LowerFunctor; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string_padding.h: In instantiation of 'void SEQAN_TEST_test_modified_string_padding_defect_2190() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:133:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string_padding.h:203:54: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 203 | ModifiedString modString(seqInf); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 18%] Linking CXX executable ../../bin/test_map cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_map.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedIterator >::ModifiedIterator(const THost&, const TFunctor&) [with THost = char*; TFunctor = CaesarChiffre]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:108:27: required from 'void SEQAN_TEST_test_modifier_view_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 108 | TModifiedIterator it(begin(myString, Standard()), myFunctor); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:94:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:124:27: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 124 | cargo(*this).func = functor; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedIterator >::ModifiedIterator(const THost&, const TFunctor&) [with THost = seqan::Iter >, seqan::AdaptorIterator > >; TFunctor = CaesarChiffre]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:110:33: required from 'void SEQAN_TEST_test_modifier_view_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 110 | TModifiedRootedIterator itR(begin(myString, Rooted()), myFunctor); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:94:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:124:27: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 124 | cargo(*this).func = functor; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedString >::ModifiedString(const TFunctor&) [with THost = seqan::String >; TFunctor = CaesarChiffre]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:155:56: required from 'void SEQAN_TEST_test_modifier_view_string_caesar_chiffre() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 155 | ModifiedString > modifiedStr(myFunctor); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:96:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:159:27: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 159 | cargo(*this).func = functor; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type, const TFunctor&) [with THost = seqan::String >; TFunctor = CaesarChiffre; typename seqan::Parameter_::Type = seqan::String >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:163:56: required from 'void SEQAN_TEST_test_modifier_view_string_caesar_chiffre() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 163 | ModifiedString > modifiedStr(originalStr, myFunctor); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:96:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:176:27: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 176 | cargo(*this).func = functor; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_map.dir/test_map.cpp.o -o ../../bin/test_map -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedString >::ModifiedString(THost_&&, const TFunctor&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::String >&; THost = seqan::ModifiedString >, seqan::ModView > >; TFunctor = CaesarChiffre; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::ModView > >; typename seqan::RemoveReference::Type = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:298:25: required from 'void SEQAN_TEST_test_modifier_view_string_nested_modifier() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 298 | TModifiedString modifiedStr(originalStr, func1); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:100:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:214:27: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 214 | cargo(*this).func = functor; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'void seqan::assignModViewFunctor(ModifiedString >&, const TFunctor&) [with THost = ModifiedString >, ModView > >; TFunctor = CaesarChiffre]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:299:29: required from 'void SEQAN_TEST_test_modifier_view_string_nested_modifier() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 299 | assignModViewFunctor(modifiedStr, func1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:100:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:396:20: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 396 | cargo(me).func = functor; | ~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'void seqan::assignModViewFunctor(ModifiedString >&, const TFunctor&) [with THost = String >; TFunctor = CaesarChiffre]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_view.h:300:29: required from 'void SEQAN_TEST_test_modifier_view_string_nested_modifier() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 300 | assignModViewFunctor(host(modifiedStr), func2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:100:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:396:20: warning: implicitly-declared 'constexpr CaesarChiffre& CaesarChiffre::operator=(const CaesarChiffre&)' is deprecated [-Wdeprecated-copy] 396 | cargo(me).func = functor; | ~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment> >; TSpec = void; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment> >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:120:30: required from 'void SEQAN_TEST_test_modifier_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 120 | TOuterModifiedString modified2(frag); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:105:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment> >; TSpec = void; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment> >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:216:30: required from 'void SEQAN_TEST_test_modifier_modified_string_cascade() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 216 | TOuterModifiedString outer(origInfix); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:108:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedString >::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; TFunctor = CaesarFunctor; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; typename seqan::RemoveReference::Type = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:335:30: required from 'void SEQAN_TEST_test_modifier_modified_string_mod_view_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 335 | TOuterModifiedString outer(origInfix); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:114:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:198:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 198 | _host(std::forward(host)), tmp_value() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TFunctor = LowerFunctor; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; typename seqan::RemoveReference::Type = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:446:30: required from 'void SEQAN_TEST_test_modifier_modified_string_reverse_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 446 | TOuterModifiedString outer(origInfix); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:120:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TFunctor = LowerFunctor; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h: In instantiation of 'seqan::ModifiedString >::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TFunctor = LowerFunctor; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; typename seqan::RemoveReference::Type = seqan::Segment >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:461:30: required from 'void SEQAN_TEST_test_modifier_modified_string_reverse_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 461 | TOuterModifiedString outer(origInfix); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:120:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:198:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 198 | _host(std::forward(host)), tmp_value() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:106:25: required from 'void SEQAN_TEST_test_modifier_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 106 | TModifiedString modified(original); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:105:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:119:30: required from 'void SEQAN_TEST_test_modifier_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 119 | TInnerModifiedString modified(frag); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:105:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TFunctor = LowerFunctor; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:318:30: required from 'void SEQAN_TEST_test_modifier_modified_string_mod_view_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 318 | TInnerModifiedString modified(origInfix); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:114:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string_padding.h:203:54: required from 'void SEQAN_TEST_test_modified_string_padding_defect_2190() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 203 | ModifiedString modString(seqInf); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:133:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Built target test_map make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:216:27: required from 'void seqan::setCargo(ModifiedString >&, typename Parameter_::Type) [with THost = String >; TPositions = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' 216 | me._cargo = _toPointer(_cargo); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:357:13: required from 'typename seqan::Infix > >::Type seqan::infix(ModifiedString >&, TPosBegin, TPosEnd) [with THost = String >; TPositions = String >; TPosBegin = int; TPosEnd = int; typename Infix > >::Type = ModifiedString >, ModPos >, InfixSegment> > >]' 357 | setCargo(other, infix(cargo(me), pos_begin, pos_end)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:371:9: required from 'void SEQAN_TEST_test_modifier_modified_string_mod_pos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 371 | SEQAN_ASSERT_EQ(infix(modified, 1, 3), "CG"); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:116:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Building CXX object tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o -MF CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o.d -o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(const ModifiedString&, Tag) [with THost = Segment >, InfixSegment>; TSpec = ModView; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, InfixSegment>, ModView >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >; typename Iterator >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, InfixSegment>, ModView >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = Segment >, InfixSegment>; TSpec = ModView]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; T2 = char [3]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; T2 = char [3]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:320:9: required from 'void SEQAN_TEST_test_modifier_modified_string_mod_view_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:114:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:205:36: required from 'typename seqan::Parameter_::Type seqan::cargo(const ModifiedString >&) [with THost = String >; TPositions = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' 205 | return _toParameter(me._cargo); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:299:24: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = String >; TPositions = Segment >, InfixSegment>; typename Size > >::Type = unsigned int]' 299 | return length(cargo(me)); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModPos >, InfixSegment> > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1086 | write(target, iter, length(cont)); | ~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModPos >, InfixSegment> >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModPos >, seqan::InfixSegment> > >; T2 = char [3]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModPos >, seqan::InfixSegment> > >; T2 = char [3]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:371:9: required from 'void SEQAN_TEST_test_modifier_modified_string_mod_pos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:116:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:609:22: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(const ModifiedString&, Tag) [with THost = Segment >, InfixSegment>; TSpec = ModView; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >]' 609 | TResult tmp(begin(host(me), tag_)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, InfixSegment>, ModView >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >; typename Iterator >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, InfixSegment>, ModView >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = Segment >, InfixSegment>; TSpec = ModView]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; T2 = char [3]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >; T2 = char [3]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:320:9: required from 'void SEQAN_TEST_test_modifier_modified_string_mod_view_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:114:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment >, InfixSegment>; TSpec = ModView; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString >, InfixSegment>, ModView >; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, InfixSegment>, ModView >, Tag >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >, Tag >; typename Iterator >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, ModView >, Tag >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, InfixSegment>, ModView >, Tag >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = ModifiedString >, InfixSegment>, ModView >; TSpec = Tag]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >, seqan::Tag >; T2 = char [3]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView >, seqan::Tag >; T2 = char [3]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h:447:9: required from 'void SEQAN_TEST_test_modifier_modified_string_reverse_segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:120:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h: In instantiation of 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 195 | CharString s = test_iterator(inf, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:52:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 52 | TModStr modStr(str, shape); | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:214:53: note: initializing argument 1 of 'seqan::ModifiedString > >::ModifiedString(typename seqan::Parameter_::Type, const TCyclicShape&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>; TCyclicShape = seqan::CyclicShape > >]' 214 | ModifiedString(typename Parameter_::Type host, TCyclicShape const & shape) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:215:25: required from 'seqan::ModifiedString > >::ModifiedString(typename seqan::Parameter_::Type, const TCyclicShape&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>; TCyclicShape = seqan::CyclicShape > >]' 215 | _host(_toPointer(host)), _cargo(shape) | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:52:13: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' 52 | TModStr modStr(str, shape); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 195 | CharString s = test_iterator(inf, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:128:32: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 128 | TStandardModIter a2 = begin(modStr, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:129:32: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 129 | TStandardModIter a3 = begin(modStr, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = const String >; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = const seqan::String >; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' 56 | TIter it = begin(modStr, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:175:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_alloc_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 175 | CharString s = test_iterator(STRING1, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, Tag >, ModCyclicShape > > > >; TSource = ModifiedString >, Tag >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, Tag >, ModCyclicShape > > > >; TSource = ModifiedString >, Tag >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = ModifiedString >, Tag >; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, Tag >, ModCyclicShape > > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::ModifiedString >, seqan::Tag >; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' 56 | TIter it = begin(modStr, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:185:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_mod_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 185 | CharString s = test_iterator(revStr, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator > > > >; TSource = ModifiedString >, InfixSegment>, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator > > > >; TSource = ModifiedString >, InfixSegment>, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = Segment >, InfixSegment>; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' 56 | TIter it = begin(modStr, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 195 | CharString s = test_iterator(inf, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, 1> > > >; TSource = ModifiedString >, ModCyclicShape >, 1> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, 1> > > >; TSource = ModifiedString >, ModCyclicShape >, 1> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = const String >; TSpec = FixedShape<2, GappedShape >, 1>; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, 1> > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = const seqan::String >; TSpec = seqan::FixedShape<2, seqan::GappedShape >, 1>; typename seqan::Value::Type = char]' 56 | TIter it = begin(modStr, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:208:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_fixed_alloc_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 208 | CharString s = test_iterator(STRING1, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 1> >& seqan::CyclicShape >, 1> >::operator=(const seqan::CyclicShape >, 1> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 1> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 2; unsigned int RightOffset = 1; int P00 = 1; int P01 = 2; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 427 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = String >; TSpec = CyclicShape > >; typename Size > >::Type = unsigned int]' 689 | return end(me, Standard()) - begin(me, Standard()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:107:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_functions() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 107 | SEQAN_ASSERT_EQ(18u, length(modStr)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:387:15: required from 'void seqan::goBegin(TIterator&, TContainer&) [with TIterator = const char*; TContainer = Segment >, InfixSegment>]' 387 | it = begin(container); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:530:12: required from 'void seqan::goEnd(ModifiedIterator > >&, TContainer&) [with THost = const char*; TSpec = GappedShape >; TContainer = ModifiedString >, InfixSegment>, ModCyclicShape > > > >]' 530 | goBegin(host(me), host(cont)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:441:10: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(ModifiedString > >&, Tag) [with THost = Segment >, InfixSegment>; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 441 | goEnd(tmp, me); | ~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:57:22: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' 57 | TIter itEnd = end(modStr, Standard()); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 195 | CharString s = test_iterator(inf, shape); | ~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const ModifiedString > >&, Tag) [with THost = String >; TSpec = FixedShape<1, GappedShape >, 0>; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >]' 371 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, ModCyclicShape >, 0> > > >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >; typename Iterator >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape >, 0> > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape >, 0> > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:89:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const ModifiedString > >&, Tag) [with THost = String >; TSpec = FixedShape<1, GappedShape >, 0>; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, 0> > > >]' 427 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = String >; TSpec = CyclicShape >, 0> >; typename Size > >::Type = unsigned int]' 689 | return end(me, Standard()) - begin(me, Standard()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape >, 0> > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1086 | write(target, iter, length(cont)); | ~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape >, 0> > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:89:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const ModifiedString > >&, Tag) [with THost = const String >; TSpec = FixedShape<1, GappedShape >, 0>; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >]' 371 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, ModCyclicShape >, 0> > > >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >; typename Iterator >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 0> > > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape >, 0> > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = const String >; TSpec = ModCyclicShape >, 0> > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:92:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, 0> > > >; TSource = const ModifiedString >, ModCyclicShape >, 0> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const ModifiedString > >&, Tag) [with THost = const String >; TSpec = FixedShape<1, GappedShape >, 0>; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, 0> > > >]' 427 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = const String >; TSpec = CyclicShape >, 0> >; typename Size > >::Type = unsigned int]' 689 | return end(me, Standard()) - begin(me, Standard()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape >, 0> > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1086 | write(target, iter, length(cont)); | ~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = const String >; TSpec = ModCyclicShape >, 0> > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:92:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 18%] Linking CXX executable ../../bin/test_modifier_cyclic_shape cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier_cyclic_shape.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -o ../../bin/test_modifier_cyclic_shape -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 18%] Built target test_modifier_cyclic_shape make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 19%] Linking CXX executable ../../bin/test_journaled_string_tree_find cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -o ../../bin/test_journaled_string_tree_find -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 19%] Built target test_journaled_string_tree_find make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 159 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: note: remove the '< >' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 333 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: note: remove the '< >' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 19%] Building CXX object tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o -MF CMakeFiles/test_parallel.dir/test_parallel.cpp.o.d -o CMakeFiles/test_parallel.dir/test_parallel.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parallel/test_parallel.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 19%] Building CXX object tests/parse_lm/CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/parse_lm/CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -MF CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o.d -o CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.cpp [ 19%] Linking CXX executable ../../bin/test_misc cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_misc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_misc.dir/test_misc.cpp.o -o ../../bin/test_misc -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 19%] Built target test_misc In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parallel/test_parallel.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parallel/test_parallel.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 20%] Building CXX object tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o -MF CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o.d -o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 20%] Linking CXX executable ../../bin/test_modifier cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier.dir/test_modifier.cpp.o -o ../../bin/test_modifier -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 20%] Built target test_modifier make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe/CMakeFiles/test_pipe.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object tests/pipe/CMakeFiles/test_pipe.dir/test_pipe.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/pipe/CMakeFiles/test_pipe.dir/test_pipe.cpp.o -MF CMakeFiles/test_pipe.dir/test_pipe.cpp.o.d -o CMakeFiles/test_pipe.dir/test_pipe.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:33: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.h:74:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 74 | struct IdentityMap : public std::unary_function< TValue, TValue > | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.h:83:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 83 | struct SimpleCompare : public std::binary_function< TValue const, TValue const, int > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 159 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: note: remove the '< >' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 333 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: note: remove the '< >' make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/platform /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform/CMakeFiles/test_platform.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Building CXX object tests/platform/CMakeFiles/test_platform.dir/test_platform.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/platform/CMakeFiles/test_platform.dir/test_platform.cpp.o -MF CMakeFiles/test_platform.dir/test_platform.cpp.o.d -o CMakeFiles/test_platform.dir/test_platform.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/platform/test_platform.cpp [ 20%] Linking CXX executable ../../bin/test_parse_lm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parse_lm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -o ../../bin/test_parse_lm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Built target test_parse_lm make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/random /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Building CXX object tests/random/CMakeFiles/test_random.dir/test_random.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/random/CMakeFiles/test_random.dir/test_random.cpp.o -MF CMakeFiles/test_random.dir/test_random.cpp.o.d -o CMakeFiles/test_random.dir/test_random.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/random/test_random.cpp [ 20%] Linking CXX executable ../../bin/test_platform cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_platform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_platform.dir/test_platform.cpp.o -o ../../bin/test_platform -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Built target test_platform make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/realign/CMakeFiles/test_realign.dir/test_realign.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/realign/CMakeFiles/test_realign.dir/test_realign.cpp.o -MF CMakeFiles/test_realign.dir/test_realign.cpp.o.d -o CMakeFiles/test_realign.dir/test_realign.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/random/test_random.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/random/test_random.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 21%] Linking CXX executable ../../bin/test_parallel cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parallel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parallel.dir/test_parallel.cpp.o -o ../../bin/test_parallel -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_parallel make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o -MF CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o.d -o CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 21%] Linking CXX executable ../../bin/test_random cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_random.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_random.dir/test_random.cpp.o -o ../../bin/test_random -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_random make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/rna_io/CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/rna_io/CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -MF CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o.d -o CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65: In member function 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >; unsigned int m = 3; TPack = seqan::Tag]', inlined from 'void comparePipeStream(TPipe&, const TStrings&) [with TPipe = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Sampler<3> >; TStrings = seqan::StringSet > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:330:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:203:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 203 | outRef->i2.i[skipped++] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'void comparePipeStream(TPipe&, const TStrings&) [with TPipe = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Sampler<3> >; TStrings = seqan::StringSet > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 3 into destination object 'seqan::Tuple, 3, seqan::Tag >::i' of size 3 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 21%] Linking CXX executable ../../bin/test_multiple_translation_units cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multiple_translation_units.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o -o ../../bin/test_multiple_translation_units -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_multiple_translation_units make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/roi_io/CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/roi_io/CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -MF CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o.d -o CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:241:24: required from 'void _testReducedAminoAcidMurphy10ModIteratorsImpl(TModString&) [with TModString = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 241 | TItR it = begin(conv, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:270:50: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_moditerators() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 270 | _testReducedAminoAcidMurphy10ModIteratorsImpl(convinf); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:51:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:247:17: required from 'void _testReducedAminoAcidMurphy10ModIteratorsImpl(TModString&) [with TModString = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 247 | it = end(conv, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:270:50: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_moditerators() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 270 | _testReducedAminoAcidMurphy10ModIteratorsImpl(convinf); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:51:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:241:24: required from 'void _testReducedAminoAcidMurphy10ModIteratorsImpl(TModString&) [with TModString = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 241 | TItR it = begin(conv, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:273:50: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_moditerators() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 273 | _testReducedAminoAcidMurphy10ModIteratorsImpl(conv2inf); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:51:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:247:17: required from 'void _testReducedAminoAcidMurphy10ModIteratorsImpl(TModString&) [with TModString = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 247 | it = end(conv, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:273:50: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_moditerators() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 273 | _testReducedAminoAcidMurphy10ModIteratorsImpl(conv2inf); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:51:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:322:29: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 322 | for (auto it = begin(occurrences), itEnd = end(occurrences); it != itEnd; ++it) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:322:55: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 322 | for (auto it = begin(occurrences), itEnd = end(occurrences); it != itEnd; ++it) | ~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = ModifiedString, Alloc<> >, ModView, SimpleType > > > > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]' 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:241:24: required from 'void _testReducedAminoAcidMurphy10ModIteratorsImpl(TModString&) [with TModString = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 241 | TItR it = begin(conv, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:270:50: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_moditerators() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 270 | _testReducedAminoAcidMurphy10ModIteratorsImpl(convinf); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:51:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const ModifiedString, Alloc<> >, ModView, SimpleType > > > > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]' 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:241:24: required from 'void _testReducedAminoAcidMurphy10ModIteratorsImpl(TModString&) [with TModString = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 241 | TItR it = begin(conv, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:273:50: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_moditerators() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 273 | _testReducedAminoAcidMurphy10ModIteratorsImpl(conv2inf); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:51:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:78:23: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | printAlignment(std::cout, layout, store, 0, 0, 400, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:78:23: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | printAlignment(std::cout, layout, store, 0, 0, 400, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:78:23: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | printAlignment(std::cout, layout, store, 0, 0, 400, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:607:15: required from 'void SEQAN_TEST_test_realign_tricky_insert_window_cuts() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 607 | insertGaps(gaps0, 30, 20); | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:666:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:78:23: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | printAlignment(std::cout, layout, store, 0, 0, 400, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:78:23: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 78 | printAlignment(std::cout, layout, store, 0, 0, 400, 0, 1000); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const CompressedSA, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, InfixSegment>, AdaptorIterator, Alloc<> >, ModView, SimpleType > > > > >, Owner > >, void, ReducedFMIndexConfig_>, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:322:29: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 322 | for (auto it = begin(occurrences), itEnd = end(occurrences); it != itEnd; ++it) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>, AdaptorIterator*, ModView, SimpleType > > > > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, ModView, SimpleType > > > > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType > >]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = ModifiedString, Alloc<> >, ModView, SimpleType > > > > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; T2 = char [28]]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; T2 = char [28]]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:304:5: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:606:11: required from 'void SEQAN_TEST_test_realign_tricky_insert_window_cuts() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 606 | TGaps gaps0(store.readSeqStore[0], store.alignedReadStore[0].gaps); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:666:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:81:16: required from 'void SEQAN_TEST_test_realign_one_read_no_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 81 | reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:653:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = ModifiedString, Alloc<> >, ModView, SimpleType > > > > >; TSpec = Owner >; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, ModView, SimpleType > > > > >, Source<> >, Caster > >, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, ModView, SimpleType > > > > >, Source<> >, Caster > >, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, ModView, SimpleType > > > > >, Source<> >, Caster > >, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, ModView, SimpleType > > > > >, Source<> >, Caster > >, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, ModView, SimpleType > > > > >, Source<> >, Caster > >, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, ModView, SimpleType > > > > >, Source<> >, Caster > >, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple > >, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Source<> >, seqan::Caster > >, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple > >, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, ModView, SimpleType > > > > >, Owner > >; TSpec = FMIndex; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 313 | indexRequire(index, FibreSALF()); // instantiate | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Connect_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:55:28: required from 'void SEQAN_TEST_test_rna_io_read_connect() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 55 | seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Stockholm_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:55:28: required from 'void SEQAN_TEST_test_rna_io_read_connect() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 55 | seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = DotBracket_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:55:28: required from 'void SEQAN_TEST_test_rna_io_read_connect() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 55 | seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vienna_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:55:28: required from 'void SEQAN_TEST_test_rna_io_read_connect() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 55 | seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ebpseq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:55:28: required from 'void SEQAN_TEST_test_rna_io_read_connect() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 55 | seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bpseq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:55:28: required from 'void SEQAN_TEST_test_rna_io_read_connect() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 55 | seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:44:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 21%] Linking CXX executable ../../bin/test_pipe cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_pipe.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_pipe.dir/test_pipe.cpp.o -o ../../bin/test_pipe -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp:95:22: required from 'void SEQAN_TEST_test_roi_roi_file_read() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 95 | seqan::RoiFileIn roiFileIn(toCString(inPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp:215:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/rna_record.h: In instantiation of 'void std::_Construct(_Tp*, _Args&& ...) [with _Tp = seqan::RnaRecord; _Args = {const seqan::RnaRecord&}]': /usr/include/c++/14/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const seqan::RnaRecord*; _ForwardIterator = seqan::RnaRecord*]' 120 | std::_Construct(std::__addressof(*__cur), *__first); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const seqan::RnaRecord*; _ForwardIterator = seqan::RnaRecord*; bool _TrivialValueTypes = false]' 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const seqan::RnaRecord*; _ForwardIterator = seqan::RnaRecord*]' 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = const seqan::RnaRecord*; _ForwardIterator = seqan::RnaRecord*; _Tp = seqan::RnaRecord]' 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc:984:34: required from 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const seqan::RnaRecord*; _Tp = seqan::RnaRecord; _Alloc = std::allocator; iterator = std::vector::iterator]' 984 | std::__uninitialized_copy_a(__mid, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 985 | this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~ 986 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1488:19: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:973:11: required from 'void seqan::insert(T&&, TPosition, const TSeq&) [with T = std::vector&; TPosition = unsigned int; TSeq = RnaRecord]' 973 | insert(std::forward(me), pos, insertSeq, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_stl_container.h:910:11: required from 'typename seqan::EnableIf::Type> >, seqan::Not::Type> > >, void>::Type seqan::append(TContainer&&, const TSource&, const Tag&) [with TContainer = std::vector&; TSource = RnaRecord; TExpand = TagGenerous_; typename EnableIf::Type> >, Not::Type> > >, void>::Type = void; typename RemoveReference::Type = std::vector]' 910 | insert(std::forward(me), length(me), source); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:903:11: required from 'void seqan::append(TTarget&&, const TSource&) [with TTarget = std::vector&; TSource = RnaRecord]' 903 | append(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/rna_struct_file.h:315:15: required from 'void seqan::readRecords(RnaStructContents&, FormattedFile, Tag, TSpec>&, TSize) [with TSpec = void; TSize = unsigned int]' 315 | append(contents.records, record); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:355:23: required from 'void SEQAN_TEST_test_rna_io_read_ebpseq() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 355 | seqan::readRecords(contents, inputfile, 100u); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/rna_record.h:119:7: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 119 | class RnaRecord | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /usr/include/c++/14/bits/alloc_traits.h:33, from /usr/include/c++/14/ext/alloc_traits.h:34, from /usr/include/c++/14/bits/basic_string.h:39, from /usr/include/c++/14/string:54: /usr/include/c++/14/bits/stl_construct.h:119:7: note: synthesized method 'seqan::RnaRecord::RnaRecord(const seqan::RnaRecord&)' first required here 119 | ::new((void*)__p) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/rna_record.h: In instantiation of 'void std::_Construct(_Tp*, _Args&& ...) [with _Tp = seqan::RnaRecord; _Args = {seqan::RnaRecord}]': /usr/include/c++/14/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = seqan::RnaRecord*]' 120 | std::_Construct(std::__addressof(*__cur), *__first); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = seqan::RnaRecord*; bool _TrivialValueTypes = false]' 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = seqan::RnaRecord*]' 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = seqan::RnaRecord*; _Tp = seqan::RnaRecord]' 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:384:41: required from '_ForwardIterator std::__uninitialized_move_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = seqan::RnaRecord*; _ForwardIterator = seqan::RnaRecord*; _Allocator = allocator]' 384 | return std::__uninitialized_copy_a(_GLIBCXX_MAKE_MOVE_ITERATOR(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 | _GLIBCXX_MAKE_MOVE_ITERATOR(__last), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | __result, __alloc); | ~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc:969:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:973:11: required from 'void seqan::insert(T&&, TPosition, const TSeq&) [with T = std::vector&; TPosition = unsigned int; TSeq = RnaRecord]' 973 | insert(std::forward(me), pos, insertSeq, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_stl_container.h:910:11: required from 'typename seqan::EnableIf::Type> >, seqan::Not::Type> > >, void>::Type seqan::append(TContainer&&, const TSource&, const Tag&) [with TContainer = std::vector&; TSource = RnaRecord; TExpand = TagGenerous_; typename EnableIf::Type> >, Not::Type> > >, void>::Type = void; typename RemoveReference::Type = std::vector]' 910 | insert(std::forward(me), length(me), source); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:903:11: required from 'void seqan::append(TTarget&&, const TSource&) [with TTarget = std::vector&; TSource = RnaRecord]' 903 | append(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/rna_struct_file.h:315:15: required from 'void seqan::readRecords(RnaStructContents&, FormattedFile, Tag, TSpec>&, TSize) [with TSpec = void; TSize = unsigned int]' 315 | append(contents.records, record); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:355:23: required from 'void SEQAN_TEST_test_rna_io_read_ebpseq() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 355 | seqan::readRecords(contents, inputfile, 100u); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/rna_record.h:119:7: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 119 | class RnaRecord | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /usr/include/c++/14/bits/stl_construct.h:119:7: note: synthesized method 'seqan::RnaRecord::RnaRecord(seqan::RnaRecord&&)' first required here 119 | ::new((void*)__p) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_pipe make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score/CMakeFiles/test_score.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/score/CMakeFiles/test_score.dir/test_score.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/score/CMakeFiles/test_score.dir/test_score.cpp.o -MF CMakeFiles/test_score.dir/test_score.cpp.o.d -o CMakeFiles/test_score.dir/test_score.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score/test_score.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score/test_score.cpp:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score/test_score.cpp:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score/test_score.cpp:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score/test_score.cpp:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_roi_io_isOpen_fileIn() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In static member function 'static const char* seqan::ClassTest::StaticData::_computePathToRoot()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 21%] Linking CXX executable ../../bin/test_roi_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_roi_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -o ../../bin/test_roi_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_roi_io make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -MF CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o.d -o CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_combination.cpp [ 21%] Linking CXX executable ../../bin/test_score cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_score.dir/test_score.cpp.o -o ../../bin/test_score -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_score make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_extension.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -MF CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o.d -o CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_extension.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_combination.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_combination.cpp:42: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_combination.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_extension.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_extension.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_extension.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 21%] Linking CXX executable ../../bin/test_seeds_combination cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_combination.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -o ../../bin/test_seeds_combination -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_seeds_combination make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -MF CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o.d -o CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_global_chaining.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_global_chaining.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_global_chaining.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_global_chaining.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 21%] Linking CXX executable ../../bin/test_seeds_extension cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_extension.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -o ../../bin/test_seeds_extension -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_seeds_extension make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -MF CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o.d -o CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_base.cpp [ 21%] Linking CXX executable ../../bin/test_realign cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_realign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_realign.dir/test_realign.cpp.o -o ../../bin/test_realign -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/ebpseq_read_write.h: In lambda function: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_exception.h:158:29: warning: 'pairPos' may be used uninitialized [-Wmaybe-uninitialized] 158 | #define SEQAN_THROW(E) throw E /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/ebpseq_read_write.h:307:21: note: in expansion of macro 'SEQAN_THROW' 307 | SEQAN_THROW(BadLexicalCast(pairPos, buffer)); | ^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io.h:67: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/rna_io/ebpseq_read_write.h:282:22: note: 'pairPos' declared here 282 | unsigned pairPos; | ^~~~~~~ [ 21%] Built target test_realign make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -MF CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o.d -o CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_base.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_base.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_base.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 21%] Linking CXX executable ../../bin/test_seeds_global_chaining cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_global_chaining.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -o ../../bin/test_seeds_global_chaining -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_seeds_global_chaining make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -MF CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o.d -o CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 22%] Linking CXX executable ../../bin/test_seeds_seed_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -o ../../bin/test_seeds_seed_base -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Built target test_seeds_seed_base make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/depend [ 22%] Linking CXX executable ../../bin/test_seeds_seed_chained cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_chained.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -o ../../bin/test_seeds_seed_chained -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Built target test_seeds_seed_chained make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o [ 22%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -MF CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o.d -o CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_base.cpp cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -MF CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o.d -o CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Linking CXX executable ../../bin/test_rna_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rna_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -o ../../bin/test_rna_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Built target test_rna_io make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Building CXX object tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -MF CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o.d -o CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp [ 22%] Linking CXX executable ../../bin/test_seeds_seed_diagonal cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_diagonal.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -o ../../bin/test_seeds_seed_diagonal -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Built target test_seeds_seed_diagonal make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 23%] Building CXX object tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -MF CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o.d -o CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp [ 23%] Linking CXX executable ../../bin/test_reduced_aminoacid cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_reduced_aminoacid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o -o ../../bin/test_reduced_aminoacid -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 23%] Built target test_reduced_aminoacid make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 23%] Building CXX object tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_base.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_base.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -MF CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o.d -o CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_base.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 23%] Linking CXX executable ../../bin/test_seeds_seed_set_unordered cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_unordered.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -o ../../bin/test_seeds_seed_set_unordered -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Built target test_seeds_seed_set_unordered make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_sequence.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 23%] Building CXX object tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o -MF CMakeFiles/test_sequence.dir/test_sequence.cpp.o.d -o CMakeFiles/test_sequence.dir/test_sequence.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here 53 | seqan::SeqFileIn seqFileIn(toCString(filePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here 53 | seqan::SeqFileIn seqFileIn(toCString(filePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, SuffixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here 53 | seqan::SeqFileIn seqFileIn(toCString(filePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_write_bam.h:51:52: required from here 51 | seqan::SeqFileOut seqFileOut(toCString(tmpPath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here 53 | seqan::SeqFileIn seqFileIn(toCString(filePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1191:34: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1191 | Test_Assignments_Combinatoric(str1, str5, Exact()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: initializing argument 2 of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagExact_; size_t = unsigned int]' 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1192:34: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1192 | Test_Assignments_Combinatoric(str1, str5, Generous()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: initializing argument 2 of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_; size_t = unsigned int]' 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1193:34: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1193 | Test_Assignments_Combinatoric(str1, str5, Limit()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: initializing argument 2 of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagLimit_; size_t = unsigned int]' 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1195:34: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1195 | Test_Assignments_Combinatoric(str1, str5, Exact(), 3); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: initializing argument 2 of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagExact_; size_t = unsigned int]' 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1196:34: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1196 | Test_Assignments_Combinatoric(str1, str5, Generous(), 3); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: initializing argument 2 of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_; size_t = unsigned int]' 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1197:34: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1197 | Test_Assignments_Combinatoric(str1, str5, Limit(), 3); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: initializing argument 2 of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagLimit_; size_t = unsigned int]' 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:792:32: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 792 | Infix >::Type infix_2(infix_1); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:866:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 866 | Suffix >::Type suffix_2(suffix_1); | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_segment.h: In instantiation of 'void SEQAN_TEST_Infix() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:103:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_segment.h:51:32: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 51 | Infix >::Type infix_2(infix_1); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_segment.h: In instantiation of 'void SEQAN_TEST_Suffix() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:104:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_segment.h:160:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 160 | Suffix >::Type suffix_2(suffix_1); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = Iter >, SuffixSegment>, AdaptorIterator > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = Iter >, SuffixSegment>, AdaptorIterator > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, SuffixSegment>; TIterator = const char*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagExact_; size_t = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1191:34: required from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1191 | Test_Assignments_Combinatoric(str1, str5, Exact()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_; size_t = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1192:34: required from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1192 | Test_Assignments_Combinatoric(str1, str5, Generous()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagLimit_; size_t = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1193:34: required from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1193 | Test_Assignments_Combinatoric(str1, str5, Limit()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_segment.h:256:5: required from 'void SEQAN_TEST_ticket317() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 256 | TEST_IT(begin(sub2), begin(sub1) + 1); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:105:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, SuffixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:815:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 815 | SEQAN_ASSERT_EQ(begin(infix_5), begin(str_1)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 497 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:817:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 817 | SEQAN_ASSERT_EQ(end(infix_5), end(str_1)); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:820:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 820 | SEQAN_ASSERT(begin(infix(str_1, 0, length(str_1))) == begin(str_1)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:821:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 821 | SEQAN_ASSERT(end(infix(str_1, 0, length(str_1))) == end(str_1)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment >, SuffixSegment>; typename Iterator::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:888:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 888 | SEQAN_ASSERT(begin(suffix_5) == begin(str_1)); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = Segment >, SuffixSegment>; typename Iterator::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 497 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:890:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 890 | SEQAN_ASSERT(end(suffix_5) == end(str_1)); | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, SuffixSegment>; typename Iterator::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:893:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 893 | SEQAN_ASSERT(begin(suffix(str_1, 0)) == begin(str_1)); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, SuffixSegment>; typename Iterator::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:894:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 894 | SEQAN_ASSERT(end(suffix(str_1, 3)) == end(str_1)); | ~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = char*; TSpec = Tag]' 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_segment.h:256:5: required from 'void SEQAN_TEST_ticket317() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 256 | TEST_IT(begin(sub2), begin(sub1) + 1); /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:105:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String >, Alloc<> >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String >, Alloc<> >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1012 | int res = bandedChainAlignment(align, seedChain, scoringScheme, 14); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]' 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment >, SuffixSegment>; typename Iterator::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:888:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 888 | SEQAN_ASSERT(begin(suffix_5) == begin(str_1)); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = SeedSet >, Tag >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:221:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = SeedSet >, Tag >; TScoreValue = int; TScoreSpec = Tag; bool TFirstRow = true; bool TFirstColumn = true; bool TLastColumn = true; bool TLastRow = true; TACSpec = Tag]' 221 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, alignConfig, bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:68:37: required from 'void testBandedChainAlignmentEmptyChain(const TGapCosts&) [with TGapCosts = seqan::Tag]' 68 | int score = bandedChainAlignment(align, seedSet, scoreScheme, alignConfig, 5); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1020:39: required from 'void SEQAN_TEST_test_banded_chain_alignment_empty_set_linear() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1020 | testBandedChainAlignmentEmptyChain(seqan::LinearGaps()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1097:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, AdaptorIterator > >; typename RemoveReference::Type = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, AdaptorIterator > >; typename Iterator >::Type = Iter, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = char; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment; T2 = seqan::Segment >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1109:9: required from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagExact_; size_t = unsigned int]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1200:34: required from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1200 | Test_Assignments_Combinatoric(str1, str6, Exact()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = char]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = char; TSpec = InfixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, AdaptorIterator > >; typename RemoveReference::Type = Segment; typename Iterator >::Type = Iter, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, AdaptorIterator > >; typename Iterator >::Type = Iter, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = char; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment; T2 = seqan::Segment >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment; T2 = seqan::Segment >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1109:9: required from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagExact_; size_t = unsigned int]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1200:34: required from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1200 | Test_Assignments_Combinatoric(str1, str6, Exact()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = char]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:419:41: required from 'TScoreValue seqan::bandedChainAlignment(String, TStringSpec>&, const StringSet&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSize = unsigned int; TFragmentSpec = ExactFragment<>; TStringSpec = Alloc<>; TSequence = String, Alloc<> >; TStringSetSpec = Owner<>; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 419 | _setupAndRunBandedChainAlignment(traceSet, seedSet, value(strings, 0), value(strings, 1), scoreSchemeAnchors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 | scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:1950:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_fragments_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1950 | int result = bandedChainAlignment(fragments, strings, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2526:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:419:41: required from 'TScoreValue seqan::bandedChainAlignment(String, TStringSpec>&, const StringSet&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSize = unsigned int; TFragmentSpec = ExactFragment<>; TStringSpec = Alloc<>; TSequence = String, Alloc<> >; TStringSetSpec = Owner<>; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 419 | _setupAndRunBandedChainAlignment(traceSet, seedSet, value(strings, 0), value(strings, 1), scoreSchemeAnchors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 | scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:1950:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_fragments_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1950 | int result = bandedChainAlignment(fragments, strings, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2526:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:419:41: required from 'TScoreValue seqan::bandedChainAlignment(String, TStringSpec>&, const StringSet&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSize = unsigned int; TFragmentSpec = ExactFragment<>; TStringSpec = Alloc<>; TSequence = String, Alloc<> >; TStringSetSpec = Owner<>; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 419 | _setupAndRunBandedChainAlignment(traceSet, seedSet, value(strings, 0), value(strings, 1), scoreSchemeAnchors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 | scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:1950:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_fragments_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1950 | int result = bandedChainAlignment(fragments, strings, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2526:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 23%] Linking CXX executable ../../bin/test_seeds_seed_set_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -o ../../bin/test_seeds_seed_set_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 23%] Built target test_seeds_seed_set_base make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 24%] Building CXX object tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -MF CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o.d -o CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = Iter >, SuffixSegment>, AdaptorIterator > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = Iter >, SuffixSegment>, AdaptorIterator > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, SuffixSegment>; TIterator = const char*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = char; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = char; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In static member function 'static const char* seqan::ClassTest::StaticData::_computePathToRoot()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:419:41: required from 'TScoreValue seqan::bandedChainAlignment(String, TStringSpec>&, const StringSet&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSize = unsigned int; TFragmentSpec = ExactFragment<>; TStringSpec = Alloc<>; TSequence = String, Alloc<> >; TStringSetSpec = Owner<>; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 419 | _setupAndRunBandedChainAlignment(traceSet, seedSet, value(strings, 0), value(strings, 1), scoreSchemeAnchors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 | scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:1950:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_fragments_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1950 | int result = bandedChainAlignment(fragments, strings, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2526:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 123 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::__cxx11::list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::__cxx11::list]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::__cxx11::list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::__cxx11::list]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::__cxx11::list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::__cxx11::list]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::forward_list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::forward_list]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::forward_list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::forward_list]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::forward_list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(Gaps&, Gaps&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequenceH = String >; TGapSpecH = Tag; TSequenceV = String, Alloc<> >; TGapSpecV = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 270 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(gapsHorizontal), source(gapsVertical), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | scoreSchemeAnchors, scoreSchemeGaps, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 668 | int result = bandedChainAlignment(gapsHorizontal, gapsVertical, seedChain, scoringSchemeAnchor, scoringSchemeGap, AlignConfig(), 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::deque]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::deque]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::deque]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::deque]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::deque]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::deque]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::vector]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::vector]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::vector]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::vector]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::vector]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::vector]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' 1810 | testSequenceValue(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here 1805 | SEQAN_TYPED_TEST(StringTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' 1393 | testSequenceFront(str); | ~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here 1388 | SEQAN_TYPED_TEST(StringTestCommon, Front) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' 1084 | testSequenceBack(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here 1079 | SEQAN_TYPED_TEST(StringTestCommon, Back) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = CountingChar; TSource = char; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:785:15: required from 'void testSequenceOperatorAssign(TString&) [with TString = std::__cxx11::list]' 785 | assign(value(string2, 0), 'C'); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:795:31: required from 'void StringTestCommon__OperatorAssign::runTest() [with SEQAN_TParam = std::__cxx11::list]' 795 | testSequenceOperatorAssign(str); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:790:1: required from here 790 | SEQAN_TYPED_TEST(StringTestCommon, OperatorAssign) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = CountingChar; TSource = CountingChar; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:702:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = std::__cxx11::list; TValue = CountingChar; TPos = int]' 702 | assign(value(me, pos), _value); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:937:16: required from 'void testSequenceAssignValue(TString&) [with TString = std::__cxx11::list]' 937 | assignValue(string, 1, TValue('G')); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:946:28: required from 'void StringTestCommon__AssignValue::runTest() [with SEQAN_TParam = std::__cxx11::list]' 946 | testSequenceAssignValue(str); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:941:1: required from here 941 | SEQAN_TYPED_TEST(StringTestCommon, AssignValue) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [1]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [1]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1671:11: required from 'void testSequenceReserve(TString&) [with TString = seqan::String >]' 1671 | assign(string, ""); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1704:24: required from 'void StringTestCommon__Reserve::runTest() [with SEQAN_TParam = seqan::String >]' 1704 | testSequenceReserve(str); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1699:1: required from here 1699 | SEQAN_TYPED_TEST(StringTestCommon, Reserve) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [11]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [11]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1561:11: required from 'void testSequenceLength(TString&) [with TString = seqan::String >]' 1561 | assign(string2, "CGTACGTATC"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1570:23: required from 'void StringTestCommon__Length::runTest() [with SEQAN_TParam = seqan::String >]' 1570 | testSequenceLength(str); | ~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1565:1: required from here 1565 | SEQAN_TYPED_TEST(StringTestCommon, Length) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [2]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [2]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1516:15: required from 'void testSequenceIter(TString&) [with TString = seqan::String >]' 1516 | assign(string, "A"); | ~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1543:21: required from 'void StringTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::String >]' 1543 | testSequenceIter(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1538:1: required from here 1538 | SEQAN_TYPED_TEST(StringTestCommon, Iter) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [5]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [5]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1528:15: required from 'void testSequenceIter(TString&) [with TString = seqan::String >]' 1528 | assign(string, "ACGT"); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1543:21: required from 'void StringTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::String >]' 1543 | testSequenceIter(str); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1538:1: required from here 1538 | SEQAN_TYPED_TEST(StringTestCommon, Iter) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [13]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [13]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1337:15: required from 'void testSequenceEraseBack(TString&) [with TString = seqan::String >]' 1337 | assign(string, "ACGTACGTACGT"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1356:26: required from 'void StringTestCommon__EraseBack::runTest() [with SEQAN_TParam = seqan::String >]' 1356 | testSequenceEraseBack(str); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1351:1: required from here 1351 | SEQAN_TYPED_TEST(StringTestCommon, EraseBack) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [12]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [12]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1339:15: required from 'void testSequenceEraseBack(TString&) [with TString = seqan::String >]' 1339 | assign(string2, "ACGTACGTACG"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1356:26: required from 'void StringTestCommon__EraseBack::runTest() [with SEQAN_TParam = seqan::String >]' 1356 | testSequenceEraseBack(str); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1351:1: required from here 1351 | SEQAN_TYPED_TEST(StringTestCommon, EraseBack) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::append(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = String >; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:903:11: required from 'void seqan::append(TTarget&&, const TSource&) [with TTarget = String >&; TSource = String >]' 903 | append(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:964:15: required from 'void testSequenceAppend(TString&) [with TString = seqan::String >]' 964 | append(string1, string2); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1008:23: required from 'void StringTestCommon__Append::runTest() [with SEQAN_TParam = seqan::String >]' 1008 | testSequenceAppend(str); | ~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1003:1: required from here 1003 | SEQAN_TYPED_TEST(StringTestCommon, Append) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2098:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2098 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [25]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [25]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:998:15: required from 'void testSequenceAppend(TString&) [with TString = seqan::String >]' 998 | assign(string0, "ACGTACGTACGTTTGGATTAACCC"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1008:23: required from 'void StringTestCommon__Append::runTest() [with SEQAN_TParam = seqan::String >]' 1008 | testSequenceAppend(str); | ~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1003:1: required from here 1003 | SEQAN_TYPED_TEST(StringTestCommon, Append) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [3]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [3]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:935:11: required from 'void testSequenceAssignValue(TString&) [with TString = seqan::String >]' 935 | assign(string, "AA"); | ~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:946:28: required from 'void StringTestCommon__AssignValue::runTest() [with SEQAN_TParam = seqan::String >]' 946 | testSequenceAssignValue(str); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:941:1: required from here 941 | SEQAN_TYPED_TEST(StringTestCommon, AssignValue) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [6]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [6]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:905:15: required from 'void testSequenceReverse(TString&) [with TString = seqan::String >]' 905 | assign(string1, "ACAGT"); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:922:24: required from 'void StringTestCommon__Reverse::runTest() [with SEQAN_TParam = seqan::String >]' 922 | testSequenceReverse(str); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:917:1: required from here 917 | SEQAN_TYPED_TEST(StringTestCommon, Reverse) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = String >; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:983:11: required from 'void seqan::assign(String&, TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = String >]' 983 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:774:15: required from 'void testSequenceOperatorAssign(TString&) [with TString = seqan::String >]' 774 | assign(string2, string1); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:795:31: required from 'void StringTestCommon__OperatorAssign::runTest() [with SEQAN_TParam = seqan::String >]' 795 | testSequenceOperatorAssign(str); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:790:1: required from here 790 | SEQAN_TYPED_TEST(StringTestCommon, OperatorAssign) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h: In instantiation of 'void seqan::assign(String >&, const TSource&, Tag) [with TValue = CountingChar; TConfig = ExternalConfigLarge<>; TSource = char [4]; TExpand = TagGenerous_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = CountingChar; TTargetSpec = External<>; TSource = char [4]]' 992 | assign(target, source, typename DefaultOverflowImplicit::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:405:15: required from 'void testSequenceLessEqual(TString&) [with TString = seqan::String >]' 405 | assign(string2, "AAA"); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:424:26: required from 'void StringTestCommon__LessEqualOperator::runTest() [with SEQAN_TParam = seqan::String >]' 424 | testSequenceLessEqual(str); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:419:1: required from here 419 | SEQAN_TYPED_TEST(StringTestCommon, LessEqualOperator) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:2171:24: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 2171 | *it_target = *it_source; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = char [1]; TSpec = void; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h:403:11, inlined from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner > >&; TSource = const char (&)[1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16, inlined from 'void Test_StringSet_Concat() [with TSpec = seqan::Owner >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_stringset.h:112:16: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void Test_String_Base_Assignments(TMe&) [with TExpand = seqan::Tag; TMe = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:204:11: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void Test_String_Base_Assignments(TMe&) [with TExpand = seqan::Tag; TMe = seqan::String >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:204:11: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void seqan::append(TTarget&&, const TSource&) [with TTarget = String >&; TSource = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:903:11, inlined from 'seqan::String& seqan::operator+=(String&, const TRight&) [with TLeftValue = char; TLeftSpec = Alloc<>; TRight = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1811:11, inlined from 'void SEQAN_TEST_String_Base() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:335:10: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object '' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_String_Base() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:335:10: note: '' declared here 335 | str1 += 'x'; | ~~~~~^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(TTargetValue*, const TSource&, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:498:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1106:11: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: 'source' declared here 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(TTargetValue*, const TSource&, size_t, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:508:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1113:11: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: 'source' declared here 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(TTargetValue*, const TSource&, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:498:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1120:11: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(TTargetValue*, const TSource&, size_t, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:508:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1121:11: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::ReplaceString_::replace_(TTarget&, typename seqan::Size::Type, typename seqan::Size::Type, TSource&, typename seqan::Size::Type) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1450:31, inlined from 'void seqan::replace(TTargetValue*, size_t, size_t, const TSource&, size_t, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:557:44, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1134:12: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: 'source' declared here 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::ReplaceString_::replace_(TTarget&, typename seqan::Size::Type, typename seqan::Size::Type, TSource&, typename seqan::Size::Type) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1450:31, inlined from 'void seqan::replace(TTargetValue*, size_t, size_t, const TSource&, size_t, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:557:44, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1147:12: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1089:62: note: 'source' declared here 1089 | void Test_Assignments_Combinatoric(TTarget & target, TSource source, Tag tag, size_t limit = ~0) | ~~~~~~~~^~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::ReplaceString_::replace_(TTarget&, typename seqan::Size::Type, typename seqan::Size::Type, TSource&, typename seqan::Size::Type) [with TTarget = char*; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1450:31, inlined from 'void seqan::replace(TTargetValue*, size_t, size_t, const TSource&, size_t, Tag) [with TTargetValue = char; TSource = char; TExpand = TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/adapt_array_pointer.h:557:44, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1153:12: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = char [800]; TSource = char; TExpand = seqan::TagInsist_]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1106:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1200:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:1613:10: note: 'source' declared here 1613 | void SEQAN_TEST_ ## test_name() | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1156:1: note: in expansion of macro 'SEQAN_DEFINE_TEST' 1156 | SEQAN_DEFINE_TEST(Combinatoric) | ^~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(String&, const TSource&, typename Size >::Type, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1297:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1113:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1200:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:1613:10: note: 'source' declared here 1613 | void SEQAN_TEST_ ## test_name() | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1156:1: note: in expansion of macro 'SEQAN_DEFINE_TEST' 1156 | SEQAN_DEFINE_TEST(Combinatoric) | ^~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1120:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1200:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(String&, const TSource&, typename Size >::Type, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1297:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagExact_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1121:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1200:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(String&, const TSource&, typename Size >::Type, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1297:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1113:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1201:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:1613:10: note: 'source' declared here 1613 | void SEQAN_TEST_ ## test_name() | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1156:1: note: in expansion of macro 'SEQAN_DEFINE_TEST' 1156 | SEQAN_DEFINE_TEST(Combinatoric) | ^~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(String&, const TSource&, typename Size >::Type, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1297:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1121:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1201:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1106:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1202:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:1613:10: note: 'source' declared here 1613 | void SEQAN_TEST_ ## test_name() | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1156:1: note: in expansion of macro 'SEQAN_DEFINE_TEST' 1156 | SEQAN_DEFINE_TEST(Combinatoric) | ^~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(String&, const TSource&, typename Size >::Type, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1297:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1113:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1202:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source' with type 'char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:1613:10: note: 'source' declared here 1613 | void SEQAN_TEST_ ## test_name() | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1156:1: note: in expansion of macro 'SEQAN_DEFINE_TEST' 1156 | SEQAN_DEFINE_TEST(Combinatoric) | ^~~~~~~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1238:31, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1287:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1120:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1202:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const char; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1258:31, inlined from 'void seqan::append(String&, const TSource&, typename Size >::Type, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1297:42, inlined from 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = char; TExpand = seqan::TagLimit_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1121:11, inlined from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1202:34: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] of object 'source_const' with type 'const char' [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In function 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1097:19: note: 'source_const' declared here 1097 | TSource const source_const(source); | ^~~~~~~~~~~~ [ 24%] Linking CXX executable ../../bin/test_seq_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seq_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -o ../../bin/test_seq_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 24%] Built target test_seq_io make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/sequence/CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/sequence/CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -MF CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o.d -o CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 25%] Linking CXX executable ../../bin/test_sequence cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence.dir/test_sequence.cpp.o -o ../../bin/test_sequence -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 1566 | testStringSetIter(constStrSet); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here 1558 | SEQAN_TYPED_TEST(StringSetTestCommon, Iter) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 887 | testStringSetBegin(constStrSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here 879 | SEQAN_TYPED_TEST(StringSetTestCommon, Begin) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 1566 | testStringSetIter(constStrSet); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here 1558 | SEQAN_TYPED_TEST(StringSetTestCommon, Iter) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 887 | testStringSetBegin(constStrSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here 879 | SEQAN_TYPED_TEST(StringSetTestCommon, Begin) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 1566 | testStringSetIter(constStrSet); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here 1558 | SEQAN_TYPED_TEST(StringSetTestCommon, Iter) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 887 | testStringSetBegin(constStrSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here 879 | SEQAN_TYPED_TEST(StringSetTestCommon, Begin) /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' 2224 | (_arg1), # _arg1)) { \ | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_sequence make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -MF CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o.d -o CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = const String >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner<> >&; TSource = String >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' 1826 | appendValue(stringSet, str1); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 1898 | testStringSetValue(strSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here 1893 | SEQAN_TYPED_TEST(StringSetTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = const String >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner<> >&; TSource = String >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' 1826 | appendValue(stringSet, str1); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 1898 | testStringSetValue(strSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here 1893 | SEQAN_TYPED_TEST(StringSetTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String, Packed<> >; TTargetSpec = Alloc<>; TValue = const String, Packed<> >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Packed<> >; TString2 = String, Packed<> >; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Packed<> >, Owner<> >&; TSource = String, Packed<> >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 1826 | appendValue(stringSet, str1); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 1898 | testStringSetValue(strSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here 1893 | SEQAN_TYPED_TEST(StringSetTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String >*; TParam = String >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = const char (&)[5]; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = char [5]; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner<> >&; TSource = char (&)[5]]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 2259 | appendValue(strSet, raw1); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here 2249 | SEQAN_TYPED_TEST(StringSetTestCommon, SuffixOnValue) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String >*; TParam = String >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = const char (&)[5]; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = char [5]; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner<> >&; TSource = char (&)[5]]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 2259 | appendValue(strSet, raw1); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here 2249 | SEQAN_TYPED_TEST(StringSetTestCommon, SuffixOnValue) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = seqan::String, seqan::Packed<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = String, Packed<> >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String, Packed<> >; TTargetSpec = Alloc<>; TValue = const char (&)[5]; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Packed<> >; TString2 = char [5]; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Packed<> >, Owner<> >&; TSource = char (&)[5]]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 2259 | appendValue(strSet, raw1); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here 2249 | SEQAN_TYPED_TEST(StringSetTestCommon, SuffixOnValue) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String >*; TParam = const String >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = const String >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner<> >&; TSource = String >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' 1826 | appendValue(stringSet, str1); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 1898 | testStringSetValue(strSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here 1893 | SEQAN_TYPED_TEST(StringSetTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String >*; TParam = const String >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = const String >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, Owner<> >&; TSource = String >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' 1826 | appendValue(stringSet, str1); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' 1898 | testStringSetValue(strSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here 1893 | SEQAN_TYPED_TEST(StringSetTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = String, Packed<> >*; TParam = const String, Packed<> >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = String, Packed<> >; TTargetSpec = Alloc<>; TValue = const String, Packed<> >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Packed<> >; TString2 = String, Packed<> >; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Packed<> >, Owner<> >&; TSource = String, Packed<> >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 1826 | appendValue(stringSet, str1); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' 1898 | testStringSetValue(strSet); | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here 1893 | SEQAN_TYPED_TEST(StringSetTestCommon, Value) /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::__cxx11::basic_stringstream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::__cxx11::basic_stringstream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:70:14: required from 'void testJournaledStringAssign(const TStringJournalSpec&) [with TStringJournalSpec = seqan::SortedArray]' 70 | tmp1 << journaledString; | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:1179:30: required from 'void SEQAN_TEST_test_sequence_journaled_sorted_array_assign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1179 | testJournaledStringAssign(SortedArray()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::__cxx11::basic_stringstream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::__cxx11::basic_stringstream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:70:14: required from 'void testJournaledStringAssign(const TStringJournalSpec&) [with TStringJournalSpec = seqan::SortedArray]' 70 | tmp1 << journaledString; | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:1179:30: required from 'void SEQAN_TEST_test_sequence_journaled_sorted_array_assign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 1179 | testJournaledStringAssign(SortedArray()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_alphabet.h:93, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_container.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:71: In function 'void seqan::assign(Dna5&, char)', inlined from 'seqan::SimpleType& seqan::SimpleType::operator=(const T&) [with T = char; TValue = unsigned char; TSpec = seqan::Dna5_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/alphabet_simple_type.h:167:15, inlined from 'void testSequenceBack(TString&) [with TString = std::forward_list >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9, inlined from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/alphabet_residue.h:719:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 719 | target.value = TranslateTableCharToDna5_<>::VALUE[(unsigned char) c_source]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In member function 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1057:13: note: at offset 4 into destination object 'string' of size 4 1057 | TString string; | ^~~~~~ In function 'void testSequenceBack(TString&) [with TString = std::forward_list]', inlined from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1062 | val = 'A'; | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In member function 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1057:13: note: at offset 4 into destination object 'string' of size 4 1057 | TString string; | ^~~~~~ [ 25%] Linking CXX executable ../../bin/test_sequence_journaled cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_journaled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -o ../../bin/test_sequence_journaled -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_sequence_journaled make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd/CMakeFiles/test_simd_vector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/simd/CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/simd/CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o -MF CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o.d -o CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simd/test_simd_vector.cpp [ 25%] Linking CXX executable ../../bin/test_simd_vector cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_simd_vector make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simple_intervals_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o -MF CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o.d -o CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simple_intervals_io/test_simple_intervals_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simple_intervals_io/test_simple_intervals_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simple_intervals_io/test_simple_intervals_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 25%] Linking CXX executable ../../bin/test_simple_intervals_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simple_intervals_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o -o ../../bin/test_simple_intervals_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_simple_intervals_io make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics/CMakeFiles/test_statistics.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/statistics/CMakeFiles/test_statistics.dir/test_statistics.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/statistics/CMakeFiles/test_statistics.dir/test_statistics.cpp.o -MF CMakeFiles/test_statistics.dir/test_statistics.cpp.o.d -o CMakeFiles/test_statistics.dir/test_statistics.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'void testSequenceBack(TString&) [with TString = std::forward_list]', inlined from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:5: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1062 | val = 'A'; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In member function 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1057:13: note: at offset 4 into destination object 'string' of size 4 1057 | TString string; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:84, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h: In instantiation of 'static void seqan::WuManberImpl_::initialize(TPattern&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >; int Q = 2; TPattern = seqan::Pattern, seqan::Alloc<> > >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:399:57: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' 399 | if (me.q == 2) WuManberImpl_::initialize(me); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = StringSet, Alloc<> > >; TSpec = Tag; TNeedle2 = StringSet, Alloc<> > >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:97:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type*) [with TNeedle2 = seqan::StringSet, seqan::Alloc<> > >&; TNeedle = seqan::StringSet, seqan::Alloc<> > >; typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type = void; typename std::remove_reference<_Up>::type = seqan::StringSet, seqan::Alloc<> > >]' 97 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics/statistics_base.h:103:56: required from 'void seqan::_numOccurrences(TFloat&, String&, StringSet >&, const TAlgorithm&) [with TAlgorithm = Tag; TFloat = double; TAlphabet = SimpleType]' 103 | Pattern >, TAlgorithm> pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics/statistics_base.h:356:24: required from 'TFloat seqan::zscore(StringSet, StringSet&, MarkovModel, TFloat, TSpec>&, const TAlgorithm&) [with TAlgorithm = Tag; TFloat = double; TSpec = Tag; TDnaSequence = String, Alloc<> >]' 356 | _numOccurrences(nW, temp, W, TAlgorithm()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics_base.h:183:21: required from 'void SEQAN_TEST_test_statistics_statistics() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 183 | double x3=zscore(W, X, mm, WuManber()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:187:18: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 187 | for (pit = begin(needle(me)); pit != pit_end; ++pit) | ~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Alloc<> > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:216:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 216 | pit = begin(needle(me)); | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Alloc<> > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h: In instantiation of 'static void seqan::WuManberImpl_::initialize(TPattern&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >; int Q = 3; TPattern = seqan::Pattern, seqan::Alloc<> > >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:400:62: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' 400 | else if (me.q == 3) WuManberImpl_::initialize(me); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = StringSet, Alloc<> > >; TSpec = Tag; TNeedle2 = StringSet, Alloc<> > >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:97:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type*) [with TNeedle2 = seqan::StringSet, seqan::Alloc<> > >&; TNeedle = seqan::StringSet, seqan::Alloc<> > >; typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type = void; typename std::remove_reference<_Up>::type = seqan::StringSet, seqan::Alloc<> > >]' 97 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics/statistics_base.h:103:56: required from 'void seqan::_numOccurrences(TFloat&, String&, StringSet >&, const TAlgorithm&) [with TAlgorithm = Tag; TFloat = double; TAlphabet = SimpleType]' 103 | Pattern >, TAlgorithm> pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics/statistics_base.h:356:24: required from 'TFloat seqan::zscore(StringSet, StringSet&, MarkovModel, TFloat, TSpec>&, const TAlgorithm&) [with TAlgorithm = Tag; TFloat = double; TSpec = Tag; TDnaSequence = String, Alloc<> >]' 356 | _numOccurrences(nW, temp, W, TAlgorithm()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics_base.h:183:21: required from 'void SEQAN_TEST_test_statistics_statistics() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 183 | double x3=zscore(W, X, mm, WuManber()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:187:18: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 187 | for (pit = begin(needle(me)); pit != pit_end; ++pit) | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Alloc<> > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:216:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 216 | pit = begin(needle(me)); | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Alloc<> > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h: In instantiation of 'static void seqan::WuManberImpl_::initialize(TPattern&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >; int Q = 1; TPattern = seqan::Pattern, seqan::Alloc<> > >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:401:47: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' 401 | else WuManberImpl_::initialize(me); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = StringSet, Alloc<> > >; TSpec = Tag; TNeedle2 = StringSet, Alloc<> > >&]' 255 | _reinitPattern(me); | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:97:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type*) [with TNeedle2 = seqan::StringSet, seqan::Alloc<> > >&; TNeedle = seqan::StringSet, seqan::Alloc<> > >; typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type = void; typename std::remove_reference<_Up>::type = seqan::StringSet, seqan::Alloc<> > >]' 97 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics/statistics_base.h:103:56: required from 'void seqan::_numOccurrences(TFloat&, String&, StringSet >&, const TAlgorithm&) [with TAlgorithm = Tag; TFloat = double; TAlphabet = SimpleType]' 103 | Pattern >, TAlgorithm> pattern(needle); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics/statistics_base.h:356:24: required from 'TFloat seqan::zscore(StringSet, StringSet&, MarkovModel, TFloat, TSpec>&, const TAlgorithm&) [with TAlgorithm = Tag; TFloat = double; TSpec = Tag; TDnaSequence = String, Alloc<> >]' 356 | _numOccurrences(nW, temp, W, TAlgorithm()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics_base.h:183:21: required from 'void SEQAN_TEST_test_statistics_statistics() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 183 | double x3=zscore(W, X, mm, WuManber()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:187:18: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 187 | for (pit = begin(needle(me)); pit != pit_end; ++pit) | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Alloc<> > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_wumanber.h:216:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 216 | pit = begin(needle(me)); | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Alloc<> > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_statistics_statistics() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 25%] Linking CXX executable ../../bin/test_statistics cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_statistics.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_statistics.dir/test_statistics.cpp.o -o ../../bin/test_statistics -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_statistics make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/store/CMakeFiles/test_store.dir/test_store.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/store/CMakeFiles/test_store.dir/test_store.cpp.o -MF CMakeFiles/test_store.dir/test_store.cpp.o.d -o CMakeFiles/test_store.dir/test_store.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:745:69: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' 745 | ModifiedString > quals(fragStore.readSeqStore[idCount]); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:762:10: required from 'void SEQAN_TEST_test_store_io_readwrite_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 762 | write(fAmosOut, store, seqan::Amos()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:50:16: required from 'void SEQAN_TEST_test_store_io_read_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 50 | UcscFileIn fin(toCString(ucscPath)); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:43:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:346:15: required from 'void SEQAN_TEST_test_store_io_read_gff() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 346 | GffFileIn f(toCString(gffPath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:740:27: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' 740 | writeWrappedString(iter, fragStore.readSeqStore[idCount], 60); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:762:10: required from 'void SEQAN_TEST_test_store_io_readwrite_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 762 | write(fAmosOut, store, seqan::Amos()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(const ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, StreamIterator > >; TSequence = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TSize = int]' 489 | TIter iter = begin(seq, Rooted()); | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:746:27: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' 746 | writeWrappedString(iter, quals, 60); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:762:10: required from 'void SEQAN_TEST_test_store_io_readwrite_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 762 | write(fAmosOut, store, seqan::Amos()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:56:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:701:16: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 701 | SeqFileOut fFastaOut(toCString(outPathFasta)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:602:19: required from 'void _writeStore(TFragStore&, const std::string&, const char*) [with TFragStore = seqan::FragmentStore<>; std::string = std::__cxx11::basic_string]' 602 | printAlignment(file, layout, store, 0, 0, 1030, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:624:16: required from 'void SEQAN_TEST_test_store_io_split_sam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 624 | _writeStore(store, outPath, ".1.txt"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:50:16: required from 'void SEQAN_TEST_test_store_io_read_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 50 | UcscFileIn fin(toCString(ucscPath)); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:43:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:346:15: required from 'void SEQAN_TEST_test_store_io_read_gff() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 346 | GffFileIn f(toCString(gffPath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:701:16: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 701 | SeqFileOut fFastaOut(toCString(outPathFasta)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:602:19: required from 'void _writeStore(TFragStore&, const std::string&, const char*) [with TFragStore = seqan::FragmentStore<>; std::string = std::__cxx11::basic_string]' 602 | printAlignment(file, layout, store, 0, 0, 1030, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:624:16: required from 'void SEQAN_TEST_test_store_io_split_sam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 624 | _writeStore(store, outPath, ".1.txt"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:602:19: required from 'void _writeStore(TFragStore&, const std::string&, const char*) [with TFragStore = seqan::FragmentStore<>; std::string = std::__cxx11::basic_string]' 602 | printAlignment(file, layout, store, 0, 0, 1030, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:624:16: required from 'void SEQAN_TEST_test_store_io_split_sam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 624 | _writeStore(store, outPath, ".1.txt"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:701:16: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 701 | SeqFileOut fFastaOut(toCString(outPathFasta)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:602:19: required from 'void _writeStore(TFragStore&, const std::string&, const char*) [with TFragStore = seqan::FragmentStore<>; std::string = std::__cxx11::basic_string]' 602 | printAlignment(file, layout, store, 0, 0, 1030, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:624:16: required from 'void SEQAN_TEST_test_store_io_split_sam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 624 | _writeStore(store, outPath, ".1.txt"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:602:19: required from 'void _writeStore(TFragStore&, const std::string&, const char*) [with TFragStore = seqan::FragmentStore<>; std::string = std::__cxx11::basic_string]' 602 | printAlignment(file, layout, store, 0, 0, 1030, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:624:16: required from 'void SEQAN_TEST_test_store_io_split_sam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 624 | _writeStore(store, outPath, ".1.txt"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:63:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, SuffixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, SuffixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:355:10: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const UcscKnownIsoforms&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; UcscKnownIsoforms = Tag >]' 355 | write(target, suffix(record.transName, suf)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:168:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList > >]' 168 | writeRecord(target, record, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:170:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList >, TagList > > >]' 170 | writeRecord(target, record, static_cast::Base const &>(format)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:295:24: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&, const TFormat&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TFormat = TagSelector >, TagList > > > >]' 295 | writeRecord(iter, record, format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:303:17: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 303 | writeRecords(ucscFile, store, format(ucscFile)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:334:17: required from 'void SEQAN_TEST_test_store_io_write_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 334 | writeRecords(fout, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:731:16: required from 'void SEQAN_TEST_test_store_io_write_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 731 | loadContigs(store, toCString(inPathFasta)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:731:16: required from 'void SEQAN_TEST_test_store_io_write_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 731 | loadContigs(store, toCString(inPathFasta)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:733:16: required from 'void SEQAN_TEST_test_store_io_write_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 733 | readRecords(store, fSamIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, SuffixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:168:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList > >]' 168 | writeRecord(target, record, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:170:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList >, TagList > > >]' 170 | writeRecord(target, record, static_cast::Base const &>(format)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:295:24: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&, const TFormat&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TFormat = TagSelector >, TagList > > > >]' 295 | writeRecord(iter, record, format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:303:17: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 303 | writeRecords(ucscFile, store, format(ucscFile)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:334:17: required from 'void SEQAN_TEST_test_store_io_write_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 334 | writeRecords(fout, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:733:16: required from 'void SEQAN_TEST_test_store_io_write_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 733 | readRecords(store, fSamIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:733:16: required from 'void SEQAN_TEST_test_store_io_write_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 733 | readRecords(store, fSamIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:58:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = ModifiedAlphabet, ModExpand<'-'> >; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = ModifiedAlphabet, ModExpand<'-'> >]' 149 | return convertImpl(Convert(), source); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:92:59: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:17: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store_io.h:698:17: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 698 | writeRecords(fSamOut, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store/test_store.cpp:57:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = Segment >, PrefixSegment>]', inlined from 'int seqan::read(FragmentStore&, TFile&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:273:64: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int seqan::read(FragmentStore&, TFile&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::Segment >, seqan::PrefixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = Segment >, SuffixSegment>]', inlined from 'int seqan::read(FragmentStore&, TFile&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:274:64: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int seqan::read(FragmentStore&, TFile&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::Segment >, seqan::SuffixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 25%] Linking CXX executable ../../bin/test_seeds_align_banded_chain_impl cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_align_banded_chain_impl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -o ../../bin/test_seeds_align_banded_chain_impl -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_seeds_align_banded_chain_impl make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o -MF CMakeFiles/test_stream.dir/test_stream.cpp.o.d -o CMakeFiles/test_stream.dir/test_stream.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 25%] Linking CXX executable ../../bin/test_stringset_v2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stringset_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -o ../../bin/test_stringset_v2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 25%] Built target test_stringset_v2 make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local/CMakeFiles/test_find_swift.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/swift_local/CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/swift_local/CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -MF CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o.d -o CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp [ 25%] Linking CXX executable ../../bin/test_store cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_store.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_store.dir/test_store.cpp.o -o ../../bin/test_store -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_store make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io/CMakeFiles/test_tabix_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/tabix_io/CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/tabix_io/CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -MF CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o.d -o CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long long unsigned int; TSource = std::__cxx11::basic_string]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long long unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long unsigned int; TSource = std::__cxx11::basic_string]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = std::__cxx11::basic_string]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.h:51:22: required from 'void SEQAN_TEST_test_tabix_io_read_indexed_vcf() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 51 | seqan::VcfFileIn vcfFile(toCString(vcfPath)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.cpp:43:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.h:51:22: required from 'void SEQAN_TEST_test_tabix_io_read_indexed_vcf() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 51 | seqan::VcfFileIn vcfFile(toCString(vcfPath)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io/test_tabix_io.cpp:43:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar.h:30, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar_types.h:155:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 155 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar_types.h:207:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 207 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp: In instantiation of 'seqan::Align > testLongestEpsMatch(const TString&, const TString&) [with TString = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:219:53: required from 'void SEQAN_TEST_test_longest_epsMatch() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 219 | Align alignment = testLongestEpsMatch(seq1, seq2); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:321:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:213:12: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 213 | return alignment; | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> > >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:246:19: required from 'void testXDropAlign(const TString&, const TString&, TScore, TScoreValue, TScoreValue, TAliString&) [with TString = seqan::String, seqan::Alloc<> >; TScore = seqan::Score >; TAliString = seqan::String, seqan::Alloc<> > > >; TScoreValue = int]' 246 | _splitAtXDrops(align, scoring, scoreDropOff, minScore, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:255:19: required from 'void SEQAN_TEST_test_split_xDrop_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 255 | testXDropAlign(seq1, seq2, scoring, 3/*scoreDropOff*/, 10/*minScore*/, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:322:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> > > >; TValue = seqan::Align, seqan::Alloc<> > >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> > >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> > >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >&; TSource = Align, Alloc<> > >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> > >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:246:19: required from 'void testXDropAlign(const TString&, const TString&, TScore, TScoreValue, TScoreValue, TAliString&) [with TString = seqan::String, seqan::Alloc<> >; TScore = seqan::Score >; TAliString = seqan::String, seqan::Alloc<> > > >; TScoreValue = int]' 246 | _splitAtXDrops(align, scoring, scoreDropOff, minScore, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:255:19: required from 'void SEQAN_TEST_test_split_xDrop_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 255 | testXDropAlign(seq1, seq2, scoring, 3/*scoreDropOff*/, 10/*minScore*/, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:322:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, IndexQGram > >; TSource = Index, Alloc<> >, IndexQGram > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, IndexQGram > >; TValue2 = Index, Alloc<> >, IndexQGram > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, IndexQGram > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, IndexQGram > >; typename Reference > >::Type = Index, Alloc<> >, IndexQGram > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, IndexQGram > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, IndexQGram > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:740:41: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, IndexQGram > >; TFloat = double; TSize_ = int; TSpec = Tag]' 740 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, IndexQGram > >; TSpec = Tag; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:53:13: required from 'void testLocalSwift(seqan::Finder > >&, seqan::Pattern > >&, double, int, seqan::String > >&) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index, seqan::Alloc<> >, seqan::IndexQGram > >]' 53 | while (find(finder, pattern, epsilon, minLength)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:75:16: required from here 75 | testLocalSwift(finder_swift, pattern_swift, 0.1, 6, expectedPositions); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::IndexQGram > >& seqan::Index, seqan::Alloc<> >, seqan::IndexQGram > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::IndexQGram > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::IndexQGram > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::String, seqan::Alloc<> >; TShapeSpec = seqan::UngappedShape<4>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> > >, IndexQGram > >; TSource = Index, Alloc<> > >, IndexQGram > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> > >, IndexQGram > >; TValue2 = Index, Alloc<> > >, IndexQGram > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> > >, IndexQGram > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> > >, IndexQGram > >; typename Reference > >::Type = Index, Alloc<> > >, IndexQGram > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> > >, IndexQGram > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> > >, IndexQGram > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:740:41: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> > >, IndexQGram > >; TFloat = double; TSize_ = int; TSpec = Tag]' 740 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> > >, IndexQGram > >; TSpec = Tag; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:53:13: required from 'void testLocalSwift(seqan::Finder > >&, seqan::Pattern > >&, double, int, seqan::String > >&) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >]' 53 | while (find(finder, pattern, epsilon, minLength)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:108:16: required from here 108 | testLocalSwift(finder_swift, pattern_swift, 0.1, 6, expectedPositions); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >& seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> > >; TShapeSpec = seqan::UngappedShape<4>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> > >*; TParam = seqan::Align, seqan::Alloc<> > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> > >*; TParam = Align, Alloc<> > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> > > >; TValue = seqan::Align, seqan::Alloc<> > >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> > >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> > >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >&; TSource = Align, Alloc<> > >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> > >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:246:19: required from 'void testXDropAlign(const TString&, const TString&, TScore, TScoreValue, TScoreValue, TAliString&) [with TString = seqan::String, seqan::Alloc<> >; TScore = seqan::Score >; TAliString = seqan::String, seqan::Alloc<> > > >; TScoreValue = int]' 246 | _splitAtXDrops(align, scoring, scoreDropOff, minScore, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:255:19: required from 'void SEQAN_TEST_test_split_xDrop_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 255 | testXDropAlign(seq1, seq2, scoring, 3/*scoreDropOff*/, 10/*minScore*/, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:322:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> > >*; TParam = seqan::Align, seqan::Alloc<> > >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> > >*; TParam = Align, Alloc<> > >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> > > >; TValue = seqan::Align, seqan::Alloc<> > >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> > >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> > >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >&; TSource = Align, Alloc<> > >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/../../apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> > >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:246:19: required from 'void testXDropAlign(const TString&, const TString&, TScore, TScoreValue, TScoreValue, TAliString&) [with TString = seqan::String, seqan::Alloc<> >; TScore = seqan::Score >; TAliString = seqan::String, seqan::Alloc<> > > >; TScoreValue = int]' 246 | _splitAtXDrops(align, scoring, scoreDropOff, minScore, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:255:19: required from 'void SEQAN_TEST_test_split_xDrop_align() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 255 | testXDropAlign(seq1, seq2, scoring, 3/*scoreDropOff*/, 10/*minScore*/, aliString); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local/test_find_swift.cpp:322:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long long unsigned int; TSource = String >]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long long unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long unsigned int; TSource = String >]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]', inlined from 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream/test_stream_lexical_cast.h:233:66: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void LexicalCastTest__Exception::runTest() [with SEQAN_TParam = seqan::Pair >, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/read_vcf.h:192:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_tabix_io_read_indexed_vcf() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 25%] Linking CXX executable ../../bin/test_tabix_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tabix_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -o ../../bin/test_tabix_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_tabix_io make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation/CMakeFiles/test_translation.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/translation/CMakeFiles/test_translation.dir/test_translation.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/translation/CMakeFiles/test_translation.dir/test_translation.cpp.o -MF CMakeFiles/test_translation.dir/test_translation.cpp.o.d -o CMakeFiles/test_translation.dir/test_translation.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:290:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<6>&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Dependent >; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 290 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Dependent > >; TTarget = StringSet, Alloc<> > >; unsigned char frames = 6; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:361:33: required from 'void seqan::_translateImpl(StringSet, TSpec1>, TSpec2>&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Dependent >; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 6]' 361 | _translateImplLoopOMPWrapper(target, source, GeneticCode(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | Frames_(), | ~~~~~~~~~~~~~ 363 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:428:19: required from 'void seqan::_translateInputWrap(StringSet, TSpec1>, TSpec2>&, const TInString&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 6]' 428 | _translateImpl(target, set, GeneticCode(), Frames_(), | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:538:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 538 | return _translateInputWrap(target, source, TCode(), Frames_<6>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = String, Alloc<> >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:420:18: required from 'void test_translation_onestring_multiframe_impl() [with TTargetSet = seqan::StringSet, seqan::Alloc<> > >; TParallelism = seqan::Tag]' 420 | translate(res, str, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:460:64: required from 'void SEQAN_TEST_test_translation_onestring_multiframe_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 460 | test_translation_onestring_multiframe_impl(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:290:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<6>&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Owner<>; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 290 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Owner<> >; TTarget = StringSet, Alloc<> > >; unsigned char frames = 6; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:361:33: required from 'void seqan::_translateImpl(StringSet, TSpec1>, TSpec2>&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Owner<>; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 6]' 361 | _translateImplLoopOMPWrapper(target, source, GeneticCode(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | Frames_(), | ~~~~~~~~~~~~~ 363 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:412:19: required from 'void seqan::_translateInputWrap(StringSet, TSpec1>, TSpec2>&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Owner<>; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 6]' 412 | _translateImpl(target, source, GeneticCode(), Frames_(), | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:538:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = StringSet, Alloc<> >, Owner<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 538 | return _translateInputWrap(target, source, TCode(), Frames_<6>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = StringSet, Alloc<> >, Owner<> >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:493:18: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TResultSet = seqan::StringSet, seqan::Alloc<> > >; TParallelism = seqan::Tag]' 493 | translate(res, source, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:601:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner<>; TParallelism = seqan::Tag]' 601 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:644:66: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 644 | test_translation_stringset_multiframe_impl0, Serial >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:249:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<2>&) [with TSpec1 = Alloc<>; TSpec2 = Owner >; TSpec3 = Owner >; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 249 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Owner > >; TTarget = StringSet, Alloc<> >, Owner > >; unsigned char frames = 2; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:393:33: required from 'void seqan::_translateImpl(StringSet, TSpec1>, Owner > >&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec3 = Owner >; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 2]' 393 | _translateImplLoopOMPWrapper(target, source, GeneticCode(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | Frames_(), | ~~~~~~~~~~~~~ 395 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:412:19: required from 'void seqan::_translateInputWrap(StringSet, TSpec1>, TSpec2>&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner >; TSpec3 = Owner >; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 2]' 412 | _translateImpl(target, source, GeneticCode(), Frames_(), | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:532:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 532 | return _translateInputWrap(target, source, TCode(), Frames_<2>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:493:18: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TResultSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TParallelism = seqan::Tag]' 493 | translate(res, source, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:583:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner >; TParallelism = seqan::Tag]' 583 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:650:79: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_concatdirect_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 650 | test_translation_stringset_multiframe_impl0 >,Serial>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:499:13: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TResultSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TParallelism = seqan::Tag]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:583:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner >; TParallelism = seqan::Tag]' 583 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:650:79: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_concatdirect_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 650 | test_translation_stringset_multiframe_impl0 >,Serial>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:249:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<2>&) [with TSpec1 = Alloc<>; TSpec2 = Owner >; TSpec3 = Owner >; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 249 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Owner > >; TTarget = StringSet, Alloc<> >, Owner > >; unsigned char frames = 2; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:393:33: required from 'void seqan::_translateImpl(StringSet, TSpec1>, Owner > >&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec3 = Owner >; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 2]' 393 | _translateImplLoopOMPWrapper(target, source, GeneticCode(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | Frames_(), | ~~~~~~~~~~~~~ 395 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:412:19: required from 'void seqan::_translateInputWrap(StringSet, TSpec1>, TSpec2>&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner >; TSpec3 = Owner >; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 2]' 412 | _translateImpl(target, source, GeneticCode(), Frames_(), | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:532:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 532 | return _translateInputWrap(target, source, TCode(), Frames_<2>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:493:18: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TResultSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TParallelism = seqan::Tag]' 493 | translate(res, source, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:601:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner >; TParallelism = seqan::Tag]' 601 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:650:79: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_concatdirect_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 650 | test_translation_stringset_multiframe_impl0 >,Serial>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:290:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<6>&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Dependent >; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 290 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Dependent > >; TTarget = StringSet, Alloc<> > >; unsigned char frames = 6; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:361:33: required from 'void seqan::_translateImpl(StringSet, TSpec1>, TSpec2>&, const StringSet&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Dependent >; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 6]' 361 | _translateImplLoopOMPWrapper(target, source, GeneticCode(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | Frames_(), | ~~~~~~~~~~~~~ 363 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:428:19: required from 'void seqan::_translateInputWrap(StringSet, TSpec1>, TSpec2>&, const TInString&, const GeneticCode&, const Frames_&, const TParallelism&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TInString = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; unsigned char n = 6]' 428 | _translateImpl(target, set, GeneticCode(), Frames_(), | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:538:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = String, Alloc<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 538 | return _translateInputWrap(target, source, TCode(), Frames_<6>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = String, Alloc<> >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:420:18: required from 'void test_translation_onestring_multiframe_impl() [with TTargetSet = seqan::StringSet, seqan::Alloc<> > >; TParallelism = seqan::Tag]' 420 | translate(res, str, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:460:64: required from 'void SEQAN_TEST_test_translation_onestring_multiframe_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 460 | test_translation_onestring_multiframe_impl(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:46:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, PrefixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:290:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<6>&) [with TSpec1 = Alloc<>; TSpec2 = Owner<>; TSpec3 = Owner<>; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 290 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Owner<> >; TTarget = StringSet, Alloc<> > >; unsigned char frames = 6; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:361:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:538:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = StringSet, Alloc<> >, Owner<> >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 538 | return _translateInputWrap(target, source, TCode(), Frames_<6>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> > >; TSource = StringSet, Alloc<> >, Owner<> >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:493:18: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TResultSet = seqan::StringSet, seqan::Alloc<> > >; TParallelism = seqan::Tag]' 493 | translate(res, source, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:601:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner<>; TParallelism = seqan::Tag]' 601 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:644:66: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 644 | test_translation_stringset_multiframe_impl0, Serial >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:48:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:249:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<2>&) [with TSpec1 = Alloc<>; TSpec2 = Owner >; TSpec3 = Owner >; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 249 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Owner > >; TTarget = StringSet, Alloc<> >, Owner > >; unsigned char frames = 2; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:393:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:532:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 532 | return _translateInputWrap(target, source, TCode(), Frames_<2>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:493:18: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TResultSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TParallelism = seqan::Tag]' 493 | translate(res, source, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:583:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner >; TParallelism = seqan::Tag]' 583 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:650:79: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_concatdirect_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 650 | test_translation_stringset_multiframe_impl0 >,Serial>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 945 | std::cerr << file << ":" << line << " Assertion failed : " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 | << expression1 << " == " << expression2 << " was: " << value1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 | << " != " << value2; | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 998 | return testEqual(file, line, value1, expression1, value2, expression2, 0); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:499:13: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TResultSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TParallelism = seqan::Tag]' 2047 | if (!::seqan::ClassTest::testEqual(__FILE__, __LINE__, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 | (_arg1), # _arg1, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | (_arg2), # _arg2)) { \ | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:583:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner >; TParallelism = seqan::Tag]' 583 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:650:79: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_concatdirect_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 650 | test_translation_stringset_multiframe_impl0 >,Serial>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:249:37: required from 'void seqan::_translateImplLoop(StringSet, TSpec1>, TSpec2>&, unsigned int, const StringSet&, const GeneticCode&, const Frames_<2>&) [with TSpec1 = Alloc<>; TSpec2 = Owner >; TSpec3 = Owner >; TInString = String, Alloc<> >; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 249 | _translateString(target[i], TRevComp(val), TCode()); | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:331:31: required from 'void seqan::_translateImplLoopOMPWrapper(TTarget&, const TSource&, const GeneticCode&, const Frames_&, const Serial&) [with TSource = StringSet, Alloc<> >, Owner > >; TTarget = StringSet, Alloc<> >, Owner > >; unsigned char frames = 2; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL; Serial = Tag]' 331 | _translateImplLoop(target, i, source, GeneticCode(), Frames_()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:393:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:532:35: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const GeneticCode&, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag; GeneticCodeSpec CODE_SPEC = seqan::CANONICAL]' 532 | return _translateInputWrap(target, source, TCode(), Frames_<2>(), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | TParallelism()); | ~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/translation/translation.h:589:21: required from 'void seqan::translate(TTarget&, const TSource&, TranslationFrames, const TParallelism&) [with TTarget = StringSet, Alloc<> >, Owner > >; TSource = StringSet, Alloc<> >, Owner > >; TParallelism = Tag]' 589 | return translate(target, source, frames, GeneticCode<>(), TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:493:18: required from 'void test_translation_stringset_multiframe_impl(const TResultSet&, const TSourceSet&, const TParallelism&) [with TSourceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TResultSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TParallelism = seqan::Tag]' 493 | translate(res, source, SINGLE_FRAME, TParallelism()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:601:51: required from 'void test_translation_stringset_multiframe_impl0() [with TSetSpec = seqan::Owner >; TParallelism = seqan::Tag]' 601 | test_translation_stringset_multiframe_impl(comp, source, TParallelism()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.h:650:79: required from 'void SEQAN_TEST_test_translation_stringset_multiframe_concatdirect_serial() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 650 | test_translation_stringset_multiframe_impl0 >,Serial>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:49:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 25%] Linking CXX executable ../../bin/test_find_swift cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -o ../../bin/test_find_swift -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_find_swift make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -MF CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o.d -o CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:181:16: required from 'void SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 181 | UcscFileIn ucscFileIn(toCString(ucscPath)); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:307:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, SuffixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = String >; TContainer = Segment >, SuffixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:355:10: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const UcscKnownIsoforms&) [with TTarget = String >; UcscKnownIsoforms = Tag >]' 355 | write(target, suffix(record.transName, suf)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:169:20: required from 'void SEQAN_TEST_test_ucsc_io_write_record_ucsc_known_isoforms() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 169 | writeRecord(outString, record, UcscKnownIsoforms()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:304:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:181:16: required from 'void SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 181 | UcscFileIn ucscFileIn(toCString(ucscPath)); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:307:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:181:16: required from 'void SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 181 | UcscFileIn ucscFileIn(toCString(ucscPath)); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:307:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, SuffixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = String >; TContainer = Segment >, SuffixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:355:10: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const UcscKnownIsoforms&) [with TTarget = String >; UcscKnownIsoforms = Tag >]' 355 | write(target, suffix(record.transName, suf)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:169:20: required from 'void SEQAN_TEST_test_ucsc_io_write_record_ucsc_known_isoforms() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 169 | writeRecord(outString, record, UcscKnownIsoforms()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:304:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ [ 25%] Linking CXX executable ../../bin/test_stream cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stream.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_stream.dir/test_stream.cpp.o -o ../../bin/test_stream -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_stream make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object tests/vcf_io/CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT tests/vcf_io/CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o -MF CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o.d -o CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.h:198:22: required from 'void SEQAN_TEST_test_vcf_io_vcf_file_read_record() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 198 | seqan::VcfFileIn vcfStream(toCString(vcfPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.h:198:22: required from 'void SEQAN_TEST_test_vcf_io_vcf_file_read_record() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' 198 | seqan::VcfFileIn vcfStream(toCString(vcfPath)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.cpp:45:5: required from here 1701 | SEQAN_TEST_ ## test_name(); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'void seqan::lexicalCastWithException(TTarget&, const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(UcscRecord&, UcscIOContext&, TForwardIter&, const UcscKnownGene&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:292:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:282:9: warning: 'exons' may be used uninitialized [-Wmaybe-uninitialized] 282 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(UcscRecord&, UcscIOContext&, TForwardIter&, const UcscKnownGene&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:289:14: note: 'exons' declared here 289 | unsigned exons; | ^~~~~ In function 'void seqan::lexicalCastWithException(TTarget&, const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(UcscRecord&, UcscIOContext&, TForwardIter&, const UcscKnownGene&) [with TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:292:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:282:9: warning: 'exons' may be used uninitialized [-Wmaybe-uninitialized] 282 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(UcscRecord&, UcscIOContext&, TForwardIter&, const UcscKnownGene&) [with TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:289:14: note: 'exons' declared here 289 | unsigned exons; | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 25%] Linking CXX executable ../../bin/test_ucsc_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_ucsc_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -o ../../bin/test_ucsc_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_ucsc_io make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -MF CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o.d -o CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Owner<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/read_vcf.h:192:43, inlined from 'void SEQAN_TEST_test_vcf_io_write_vcf_record() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' at /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io/test_vcf_io.h:369:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void SEQAN_TEST_test_vcf_io_write_vcf_record() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter >, AdaptorIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Owner<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/read_vcf.h:192:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter >, AdaptorIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Owner<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'void SEQAN_TEST_test_vcf_io_isOpen_fileIn() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp:36:16: warning: ignoring return value of '_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator, __cxx11::basic_string >*, vector, __cxx11::basic_string > > >]', declared with attribute 'nodiscard' [-Wunused-result] 36 | std::unique(std::begin(hsps), std::end(hsps)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:156, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp:2: /usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here 891 | unique(_ForwardIterator __first, _ForwardIterator __last) | ^~~~~~ [ 25%] Linking CXX executable ../../bin/test_translation cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_translation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_translation.dir/test_translation.cpp.o -o ../../bin/test_translation -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_translation make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object demos/CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -MF CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o.d -o CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 26%] Linking CXX executable ../bin/demo_blast_blast_in_lowlevel cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_blast_blast_in_lowlevel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -o ../bin/demo_blast_blast_in_lowlevel -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Built target demo_blast_blast_in_lowlevel make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -MF CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o.d -o CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 26%] Linking CXX executable ../../bin/test_vcf_io cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_vcf_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o -o ../../bin/test_vcf_io -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Built target test_vcf_io make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object demos/CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -MF CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o.d -o CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/gaps_example.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/gaps_example.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 26%] Linking CXX executable ../bin/demo_dox_align_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -o ../bin/demo_dox_align_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Built target demo_dox_align_align make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/DependInfo.cmake "--color=" [ 26%] Linking CXX executable ../bin/demo_dox_align_gaps_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_gaps_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -o ../bin/demo_dox_align_gaps_example -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o -MF CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o.d -o CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_banded.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Built target demo_dox_align_gaps_example make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -MF CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o.d -o CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_unbanded.cpp [ 26%] Linking CXX executable ../bin/demo_dox_align_compute_alignment_stats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_compute_alignment_stats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -o ../bin/demo_dox_align_compute_alignment_stats -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 26%] Built target demo_dox_align_compute_alignment_stats make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -MF CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o.d -o CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_unbanded.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_unbanded.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_banded.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_banded.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, InfixSegment>]' 269 | _setLength(gaps, length(value(gaps._source))); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:408:21: required from 'void seqan::setSource(Gaps >&, TSequence&) [with TSequence = Segment, Alloc<> >, InfixSegment>]' 408 | _reinitArrayGaps(gaps); | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:45:14: required from here 45 | setSource(row(infixAlign, 0), subjectInfix); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score, Blosum62_> >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score, Blosum62_> >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:20: required from here 48 | globalAlignment(infixAlign, Blosum62()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score, Blosum62_> >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score, Blosum62_> >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:20: required from here 48 | globalAlignment(infixAlign, Blosum62()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score, Blosum62_> >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score, Blosum62_> >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:20: required from here 48 | globalAlignment(infixAlign, Blosum62()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score, Blosum62_> >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score, Blosum62_> >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score, Blosum62_> >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score, Blosum62_> >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:20: required from here 48 | globalAlignment(infixAlign, Blosum62()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score, Blosum62_> >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score, Blosum62_> >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = ScoreMatrix, Blosum62_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = ScoreMatrix, Blosum62_>]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:20: required from here 48 | globalAlignment(infixAlign, Blosum62()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 27%] Linking CXX executable ../bin/demo_dox_align_global_alignment_unbanded cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -o ../bin/demo_dox_align_global_alignment_unbanded -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_global_alignment_unbanded make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -MF CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o.d -o CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp [ 27%] Linking CXX executable ../bin/demo_dox_align_integrate_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_integrate_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -o ../bin/demo_dox_align_integrate_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_integrate_align make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Linking CXX executable ../bin/demo_dox_align_global_alignment_banded cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_global_alignment_banded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o -o ../bin/demo_dox_align_global_alignment_banded -lrt -lz -lbz2 [ 27%] Building CXX object demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -MF CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o.d -o CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_global_alignment_banded make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -MF CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o.d -o CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_score.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_score.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_score.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 434 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 295 | ModifiedString const r_inf1(inf1); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:44:69: required from here 44 | std::cout << "source(row(align, 0)) == " << source(row(align, 0)) << " (full sequence)\n" | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 294 | ModifiedString const r_inf0(inf0); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment >, InfixSegment>; typename Reference > >::Type = Segment >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment >, InfixSegment>; TSequence2 = Segment >, InfixSegment>]' 427 | value(gaps._source) = source; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:25:17: required from here 25 | assignSource(row(align, 0), infix(subject, 19, 23)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:27:32: required from here 27 | int score = globalAlignment(align, sc); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, const TAlgoTag&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' 190 | res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 | TAlignConfig2(), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' 218 | return globalAlignment(align, scoringScheme, alignConfig, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&) [with TSequence = Segment >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag]' 230 | return globalAlignment(align, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:27:32: required from here 27 | int score = globalAlignment(align, sc); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, Terminator_ > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_ >; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ > >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_ >; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Terminator_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_ >; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:203:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const True&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = ModifiedString >, InfixSegment>, Tag >; TString1 = ModifiedString >, InfixSegment>, Tag >; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 203 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>; TIterator = const char*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, Terminator_ > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_ >; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ > >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_ >; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Terminator_ >; TSequenceH = Segment >, InfixSegment>; TSequenceV = Segment >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_ >; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:203:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const True&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = Segment >, InfixSegment>; TString1 = Segment >, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 203 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:351:43: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 351 | rightScore = _setUpAndRunAlignImpl(alignContext, inf0, inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter >, InfixSegment>, AdaptorIterator > >; TSpec = Tag; typename Container >::Type = ModifiedString >, InfixSegment>, Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:397:81: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Terminator_ > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, Tag >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn<>, Tag >]' 397 | tmpSeqH, sequenceEntryForScore(scoringScheme, container(iter), position(iter)), | ~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, Terminator_ > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_ >; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 891 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 | sequenceEntryForScore(scoringScheme, seqH, position(seqHIter)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 | seqVBegin, seqVEnd, scoringScheme, cacheDiag, cacheVert, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ > >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_ >; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Terminator_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_ >; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:203:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const True&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = ModifiedString >, InfixSegment>, Tag >; TString1 = ModifiedString >, InfixSegment>, Tag >; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 203 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, Terminator_ > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_ >; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ > >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_ >; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Terminator_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_ >; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:203:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const True&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = ModifiedString >, InfixSegment>, Tag >; TString1 = ModifiedString >, InfixSegment>, Tag >; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 203 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, Terminator_ > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix >, Tag >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = AlignExtend_ >; TGapCosts = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ > >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = AlignExtend_ >; TGapScheme = Tag; TTraceFlag = TracebackOn<>; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Terminator_ >; TSequenceH = ModifiedString >, InfixSegment>, Tag >; TSequenceV = ModifiedString >, InfixSegment>, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = AlignExtend_ >; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn<>; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:203:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const Score&, int, int, TScoreValue, const TTracebackConfig&, const True&, const True&) [with TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >; TString0 = ModifiedString >, InfixSegment>, Tag >; TString1 = ModifiedString >, InfixSegment>, Tag >; TScoreValue = int; TScoreSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >]' 203 | return _setUpAndRunAlignment(alignContext.dpContext, alignContext.traceSegment, scoutState, str0, str1, scoreScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | TAlignConfig(lowerDiag, upperDiag)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(Gaps&, Gaps&, const TScoreValue&, const TString0&, const TString1&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = Segment >, InfixSegment>; TSource1 = Segment >, InfixSegment>; TGapsSpec0 = Tag; TGapsSpec1 = Tag; TString0 = String >; TString1 = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 297 | leftScore = _setUpAndRunAlignImpl(alignContext, r_inf0, r_inf1, scoreScheme, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | TracebackConfig_(), TBoolBanded(), TBoolXDrop()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True; TAliExtContext_ = AliExtContext_ >, InfixSegment>, Tag >, Gaps >, InfixSegment>, Tag >, DPContext >, unsigned char, String >, Alloc<> >, String > >]' 395 | return _extendAlignmentImpl(row(align, 0), row(align, 1), origScore, hSeq, vSeq, positions, direction, lowerDiag, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | upperDiag, xDrop, scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag; TBoolBanded = True; TBoolXDrop = True]' 424 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 | scoreScheme, TBoolBanded(), TBoolXDrop(), alignContext); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:621:32: required from 'TScoreValue seqan::extendAlignment(Align&, const TScoreValue&, const TString&, const TString&, const Tuple&, const ExtensionDirection&, int, int, const TScoreValue&, const Score&) [with TStringInfix = Segment >, InfixSegment>; TAlignSpec = Tag; TString = String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = Tag]' 621 | return _extendAlignmentImpl(align, origScore, hSeq, vSeq, positions, direction, lowerDiag, upperDiag, xDrop, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 | scoreScheme, True(), True()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:38:28: required from here 38 | score = extendAlignment(align, score, subject, query, positions, EXTEND_BOTH, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | lDiag, uDiag, xDrop, sc); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 27%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_frac_score cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_frac_score -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_profile_profile_seq_frac_score make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/DependInfo.cmake "--color=" [ 27%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_score cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_score -lrt -lz -lbz2 [ 27%] Building CXX object demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -MF CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o.d -o CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_split/split_alignment.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_profile_profile_seq_score make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -MF CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o.d -o CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/arg_parse/argument_parser.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/arg_parse/argument_parser.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/arg_parse/argument_parser.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_split/split_alignment.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 27%] Linking CXX executable ../../bin/test_sequence_v2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -o ../../bin/test_sequence_v2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target test_sequence_v2 make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o -MF CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o.d -o CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_file_in.cpp [ 27%] Linking CXX executable ../bin/demo_dox_align_extend_extend_alignment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_extend_extend_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -o ../bin/demo_dox_align_extend_extend_alignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_extend_extend_alignment make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Building CXX object demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -MF CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o.d -o CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_file_in.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_file_in.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_file_in.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp:15:40: required from here 15 | std::cout << getTagKey(tags, id) << " -> "; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp:15:40: required from here 15 | std::cout << getTagKey(tags, id) << " -> "; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 29%] Linking CXX executable ../bin/demo_dox_align_split_split_alignment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_split_split_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -o ../bin/demo_dox_align_split_split_alignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_align_split_split_alignment make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Building CXX object demos/CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -MF CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o.d -o CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/enable_if.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 29%] Linking CXX executable ../bin/demo_dox_basic_enable_if cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_enable_if.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -o ../bin/demo_dox_basic_enable_if -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_basic_enable_if make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -MF CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o.d -o CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_control.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 29%] Linking CXX executable ../bin/demo_dox_bam_io_bam_tags_dict cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/link.txt --verbose=1 [ 29%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_control cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_control.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -o ../bin/demo_dox_bam_io_bam_tags_dict -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -o ../bin/demo_dox_basic_metaprogramming_control -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_basic_metaprogramming_control make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o [ 29%] Built target demo_dox_bam_io_bam_tags_dict make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -MF CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o.d -o CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_logic.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -MF CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o.d -o CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_math.cpp [ 29%] Linking CXX executable ../bin/demo_dox_bam_io_bam_file_in cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bam_io_bam_file_in.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o -o ../bin/demo_dox_bam_io_bam_file_in -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_bam_io_bam_file_in make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_logic cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/link.txt --verbose=1 [ 29%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -MF CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o.d -o CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_switch.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -o ../bin/demo_dox_basic_metaprogramming_logic -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_basic_metaprogramming_logic make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -MF CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o.d -o CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/simple_type_construction.cpp [ 30%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_math cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -o ../bin/demo_dox_basic_metaprogramming_math -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_basic_metaprogramming_math make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -MF CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o.d -o CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/zip_iterator.cpp [ 30%] Linking CXX executable ../bin/demo_dox_arg_parse_argument_parser cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_arg_parse_argument_parser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -o ../bin/demo_dox_arg_parse_argument_parser -lrt -lz -lbz2 [ 30%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_switch cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_arg_parse_argument_parser make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -o ../bin/demo_dox_basic_metaprogramming_switch -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake "--color=" [ 30%] Linking CXX executable ../bin/demo_dox_basic_simple_type_construction cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_simple_type_construction.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -o ../bin/demo_dox_basic_simple_type_construction -lrt -lz -lbz2 [ 30%] Building CXX object demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -MF CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o.d -o CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_basic_metaprogramming_switch make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend [ 30%] Built target demo_dox_basic_simple_type_construction make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -MF CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o.d -o CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_aho_corasick.cpp [ 30%] Building CXX object demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -MF CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o.d -o CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/zip_iterator.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/zip_iterator.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:14: required from here 21 | if (!open(bedIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:14: required from here 21 | if (!open(bedIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_aho_corasick.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 30%] Linking CXX executable ../bin/demo_dox_basic_zip_iterator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_zip_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -o ../bin/demo_dox_basic_zip_iterator -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_basic_zip_iterator make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o -MF CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o.d -o CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:113:43, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'int main(int, const char**)' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:30:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main(int, const char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:119:41, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'int main(int, const char**)' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:30:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main(int, const char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 30%] Linking CXX executable ../bin/demo_dox_bed_io_UNUSED_bed_stream_read cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:41:19: required from here 41 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 | /*beginPos=*/ 0, /*endPos=*/ (int)length(ref), 0, 30); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:41:19: required from here 41 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 | /*beginPos=*/ 0, /*endPos=*/ (int)length(ref), 0, 30); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:41:19: required from here 41 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 | /*beginPos=*/ 0, /*endPos=*/ (int)length(ref), 0, 30); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -o ../bin/demo_dox_bed_io_UNUSED_bed_stream_read -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:41:19: required from here 41 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 | /*beginPos=*/ 0, /*endPos=*/ (int)length(ref), 0, 30); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:41:19: required from here 41 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 | /*beginPos=*/ 0, /*endPos=*/ (int)length(ref), 0, 30); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:223: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 941 | finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:910:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 910 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:1006:37: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1006 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' 272 | buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:384:24: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 384 | buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ [ 31%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -MF CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o.d -o CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_online.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 31%] Linking CXX executable ../bin/demo_dox_find_finder_aho_corasick cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_aho_corasick.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -o ../bin/demo_dox_find_finder_aho_corasick -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole<>; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:463:41: required from 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]' 463 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = const seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:220: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:277:34: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 277 | hostIterator(finder) = finder.range.i1; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(Finder, TSpecFinder>&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:15:10: required from here 15 | clear(finder); // reset Finder | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 178 | me.range.i1 = me.range.i2 = TIterator(); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:171: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h: In instantiation of 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:414:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 414 | finder.range.i1 = saIt + rng.i1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:415:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 415 | finder.range.i2 = saIt + rng.i2; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:419:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 419 | finder.range.i1 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:420:25: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 420 | finder.range.i2 = saIt; | ~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' 105 | Iter(Iter const & other_) : | ^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 31%] Built target demo_dox_find_finder_aho_corasick make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:46:23: required from here 46 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o -MF CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o.d -o CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/gff_io/UNUSED_gff_stream_read.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::FMIndex<> >; TSpec = seqan::EmptyEdges]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:407:59: required from 'void seqan::_findFirstIndex(Finder >, TSpecFinder>&, const TPattern&, FinderSTree) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; TSpecFinder = const Tag; TPattern = char [2]; FinderSTree = const Tag]' 407 | typename Iterator >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = FMIndex<>; TSpecFinder = const Tag; TPattern = char [2]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:12:16: required from here 12 | while (find(finder, "y")) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_online.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:32: required from here 20 | GffFileIn gffIn(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:32: required from here 20 | GffFileIn gffIn(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:32: required from here 20 | GffFileIn gffIn(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 31%] Linking CXX executable ../bin/demo_dox_find_finder_online cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_online.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -o ../bin/demo_dox_find_finder_online -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_find_finder_online make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 31%] Linking CXX executable ../bin/demo_dox_gff_io_UNUSED_gff_stream_read cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o -o ../bin/demo_dox_gff_io_UNUSED_gff_stream_read -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_gff_io_UNUSED_gff_stream_read make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp [ 31%] Linking CXX executable ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -o ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/breadth_first_search.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/breadth_first_search.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/breadth_first_search.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 31%] Linking CXX executable ../bin/demo_dox_graph_algorithms_bellman_ford_algorithm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_bellman_ford_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp [ 31%] Linking CXX executable ../bin/demo_dox_graph_algorithms_breadth_first_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_breadth_first_search -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_graph_algorithms_breadth_first_search make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/depth_first_search.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/depth_first_search.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/depth_first_search.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 32%] Linking CXX executable ../bin/demo_dox_graph_algorithms_dag_shortest_path cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -o ../bin/demo_dox_graph_algorithms_dag_shortest_path -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_dag_shortest_path make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dijkstra.cpp [ 32%] Linking CXX executable ../bin/demo_dox_find_finder_index cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o -o ../bin/demo_dox_find_finder_index -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Linking CXX executable ../bin/demo_dox_graph_algorithms_depth_first_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_depth_first_search -lrt -lz -lbz2 [ 32%] Built target demo_dox_find_finder_index make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_depth_first_search make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dijkstra.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dijkstra.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 32%] Linking CXX executable ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/heaviest_increasing_subsequence.cpp [ 32%] Linking CXX executable ../../bin/test_seeds_banded_chain_alignment_interface cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -o ../../bin/test_seeds_banded_chain_alignment_interface -lrt -lz -lbz2 [ 32%] Linking CXX executable ../bin/demo_dox_graph_algorithms_ford_fulkerson_algorithm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_ford_fulkerson_algorithm -lrt -lz -lbz2 [ 32%] Linking CXX executable ../bin/demo_dox_graph_algorithms_dijkstra cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_ford_fulkerson_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target test_seeds_banded_chain_alignment_interface make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/depend /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o -o ../bin/demo_dox_graph_algorithms_dijkstra -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_dijkstra make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o [ 33%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o [ 33%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/kruskals_algorithm.cpp cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_common_subsequence.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/heaviest_increasing_subsequence.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/heaviest_increasing_subsequence.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/kruskals_algorithm.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/kruskals_algorithm.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/demo_dox_graph_algorithms_heaviest_increasing_subsequence cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_heaviest_increasing_subsequence -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_common_subsequence.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_common_subsequence.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 33%] Built target demo_dox_graph_algorithms_heaviest_increasing_subsequence In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/prims_algorithm.cpp [ 33%] Linking CXX executable ../bin/demo_dox_graph_algorithms_longest_increasing_subsequence cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_longest_increasing_subsequence -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Built target demo_dox_graph_algorithms_longest_increasing_subsequence make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/DependInfo.cmake "--color=" [ 33%] Linking CXX executable ../bin/demo_dox_graph_algorithms_kruskals_algorithm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_kruskals_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Built target demo_dox_graph_algorithms_kruskals_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/DependInfo.cmake "--color=" [ 33%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/strongly_connected_components.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/topological_sort.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/prims_algorithm.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/prims_algorithm.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/strongly_connected_components.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/strongly_connected_components.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/topological_sort.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/topological_sort.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/demo_dox_graph_algorithms_prims_algorithm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_prims_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 33%] Built target demo_dox_graph_algorithms_prims_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -MF CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o.d -o CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/transitive_closure.cpp [ 33%] Linking CXX executable ../bin/demo_dox_graph_algorithms_longest_common_subsequence cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_longest_common_subsequence -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Built target demo_dox_graph_algorithms_longest_common_subsequence make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -MF CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o.d -o CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_align/graph_align.cpp [ 34%] Linking CXX executable ../bin/demo_dox_graph_algorithms_topological_sort cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -o ../bin/demo_dox_graph_algorithms_topological_sort -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_graph_algorithms_topological_sort make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o -MF CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o.d -o CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_types/graph_algo_dijkstra.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/transitive_closure.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/transitive_closure.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 34%] Linking CXX executable ../bin/demo_dox_graph_algorithms_strongly_connected_components cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o -o ../bin/demo_dox_graph_algorithms_strongly_connected_components -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_graph_algorithms_strongly_connected_components make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o -MF CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o.d -o CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_align/graph_align.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_align/graph_align.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 34%] Linking CXX executable ../bin/demo_dox_consensus_consensus_alignment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_consensus_consensus_alignment.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_types/graph_algo_dijkstra.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_types/graph_algo_dijkstra.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -o ../bin/demo_dox_consensus_consensus_alignment -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_consensus_consensus_alignment In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_align/graph_align.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -MF CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o.d -o CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash.cpp [ 34%] Linking CXX executable ../bin/demo_dox_graph_algorithms_transitive_closure cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -o ../bin/demo_dox_graph_algorithms_transitive_closure -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_graph_algorithms_transitive_closure make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -MF CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o.d -o CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash_next.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 34%] Linking CXX executable ../bin/demo_dox_graph_types_graph_algo_dijkstra cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o -o ../bin/demo_dox_graph_types_graph_algo_dijkstra -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_graph_types_graph_algo_dijkstra make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -MF CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o.d -o CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash_next.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash_next.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 34%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o -o ../bin/demo_dox_index_UNUSED_shape -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_index_UNUSED_shape make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -MF CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o.d -o CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 35%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape_hash cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -o ../bin/demo_dox_index_UNUSED_shape_hash -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_UNUSED_shape_hash make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -MF CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o.d -o CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 35%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape_hash_next In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -o ../bin/demo_dox_index_UNUSED_shape_hash_next -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_UNUSED_shape_hash_next make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o -MF CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o.d -o CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TSpec2 = seqan::ParentLinks<>; TIndex = seqan::Index > >; TSpec = seqan::Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:366:29: required from 'const seqan::Iter > > >& seqan::Iter > > >::operator=(const seqan::Iter > > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 366 | *(TBase*)(this) = _origin; | ~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:11:55: required from here 11 | itDefault = begin(index, TopDown >()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:244:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 244 | vDesc = value(_origin); | ~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:245:25: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 245 | _parentDesc = nodeUp(_origin); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TSpec2 = seqan::ParentLinks; TIndex = seqan::Index > >; TSpec = seqan::Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:366:29: required from 'const seqan::Iter > > >& seqan::Iter > > >::operator=(const seqan::Iter > > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' 366 | *(TBase*)(this) = _origin; | ~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:22:66: required from here 22 | itPostOrder = begin(index, TopDown >()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:244:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 244 | vDesc = value(_origin); | ~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:245:25: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 245 | _parentDesc = nodeUp(_origin); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks; TDfsOrder = Postorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1537:26: required from 'typename seqan::Iterator, TSpec>::Type seqan::begin(Index&, TSpec) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown >; typename Iterator, TSpec>::Type = Iter > >, VSTree > > >]' 1537 | while (goDown(it)) ; | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:22:24: required from here 22 | itPostOrder = begin(index, TopDown >()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1534:66: required from 'typename seqan::Iterator, TSpec>::Type seqan::begin(Index&, TSpec) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown >; typename Iterator, TSpec>::Type = Iter > >, VSTree > > >]' 1534 | typename Iterator, TSpec>::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:11:22: required from here 11 | itDefault = begin(index, TopDown >()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:15:46: required from here 15 | std::cout << representative(itDefault) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks<>; TDfsOrder = Preorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks<>]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2256:24: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Preorder; THideEmptyEdges = True]' 2256 | if (!goDown(it) && !goRight(it)) | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:16:15: required from here 16 | goNext(itDefault); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Preorder; THideEmptyEdges = True]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:16:15: required from here 16 | goNext(itDefault); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2310:26: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Postorder; THideEmptyEdges = True]' 2310 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Postorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:27:15: required from here 27 | goNext(itPostOrder); | ~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1534:66: required from 'typename seqan::Iterator, TSpec>::Type seqan::begin(Index&, TSpec) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown >; typename Iterator, TSpec>::Type = Iter > >, VSTree > > >]' 1534 | typename Iterator, TSpec>::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:11:22: required from here 11 | itDefault = begin(index, TopDown >()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:15:46: required from here 15 | std::cout << representative(itDefault) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX executable ../bin/demo_dox_graph_align_graph_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_align_graph_align.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:11:51: required from here 11 | itDefault = begin(index, BottomUp()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:473:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 473 | vDesc = _origin.vDesc; | ~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -o ../bin/demo_dox_graph_align_graph_align -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1547:79: required from 'typename seqan::Iterator, seqan::BottomUp >::Type seqan::begin(Index&, BottomUp) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = Postorder; typename Iterator, BottomUp >::Type = Iter > >, VSTree > >]' 1547 | return typename Iterator, BottomUp >::Type(index); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:11:22: required from here 11 | itDefault = begin(index, BottomUp()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:15:46: required from here 15 | std::cout << representative(itDefault) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:15:46: required from here 15 | std::cout << representative(itDefault) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 35%] Built target demo_dox_graph_align_graph_align make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o -MF CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o.d -o CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:18:11: required from here 18 | goRoot(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:18:11: required from here 18 | goRoot(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > >; TSpec = Preorder; TValue = char]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1928:27: required from 'bool seqan::_goDownString(Iter > >&, const TString&, TSize&) [with TIndex = Index > >; TSpec = Preorder; TString = char [5]; TSize = unsigned int]' 1928 | while (_goDownChar(node, *p_begin)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:12:11: required from here 12 | goDown(it, "ISSI"); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1898:23: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1898 | value(it) = nodeDesc; | ~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1897:25: required from 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > >; TSpec = Preorder; TValue = char]' 1897 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1928:27: required from 'bool seqan::_goDownString(Iter > >&, const TString&, TSize&) [with TIndex = Index > >; TSpec = Preorder; TString = char [5]; TSize = unsigned int]' 1928 | while (_goDownChar(node, *p_begin)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:12:11: required from here 12 | goDown(it, "ISSI"); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1751:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1751 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:13:52: required from here 13 | std::cout << "The string " << representative(it) << " occurs " << range(it).i2 - range(it).i1 << | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:13:52: required from here 13 | std::cout << "The string " << representative(it) << " occurs " << range(it).i2 - range(it).i1 << | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative_bottomUp /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative_bottomUp -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_begin_atEnd_representative_bottomUp make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -MF CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o.d -o CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_begin_atEnd_representative make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -MF CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o.d -o CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:19:92: required from here 19 | Iterator > >::Type tdIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::PreorderEmptyEdges]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:19:92: required from here 19 | Iterator > >::Type tdIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:30:72: required from here 30 | std::cout << "Representative " << representative(tdIterator) << " has " << count << " children and "; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = PreorderEmptyEdges; THideEmptyEdges = False]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = PreorderEmptyEdges]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:277:11: required from 'seqan::Iter seqan::operator++(Iter&, int) [with TContainer = Index > >; TSpec = VSTree > >]' 277 | goNext(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:36:19: required from here 36 | tdIterator++; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp:30:72: required from here 30 | std::cout << "Representative " << representative(tdIterator) << " has " << count << " children and "; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 35%] Linking CXX executable ../bin/demo_dox_index_begin_range_goDown_representative_repLength cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -o ../bin/demo_dox_index_begin_range_goDown_representative_repLength -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ [ 35%] Built target demo_dox_index_begin_range_goDown_representative_repLength /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -MF CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o.d -o CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 36%] Linking CXX executable ../bin/demo_dox_index_counting cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_counting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o -o ../bin/demo_dox_index_counting -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:17:32: required from here 17 | SeqFileIn file(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:17:32: required from here 17 | SeqFileIn file(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_counting In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:17:32: required from here 17 | SeqFileIn file(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:17:32: required from here 17 | SeqFileIn file(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:17:32: required from here 17 | SeqFileIn file(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o -MF CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o.d -o CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index > >; TSource = Index > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > >; TValue2 = Index > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > >; typename Reference > >::Type = Index > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > > >; typename Parameter_::Type>::Type = Index > >&; typename Haystack::Type = Index > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp:14:16: required from here 14 | while (find(finder, "to")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > >& seqan::Index > >::operator=(const seqan::Index > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > > >; TSpec = Preorder; TValue = char]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1928:27: required from 'bool seqan::_goDownString(Iter > >&, const TString&, TSize&) [with TIndex = Index > > >; TSpec = Preorder; TString = char [4]; TSize = unsigned int]' 1928 | while (_goDownChar(node, *p_begin)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > > >; TSpec = Preorder; TObject = char [4]]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > > >; TSpec = Preorder; TObject = char [4]]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:18:11: required from here 18 | goDown(it, "SSI"); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1898:23: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1898 | value(it) = nodeDesc; | ~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1897:25: required from 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > > >; TSpec = Preorder; TValue = char]' 1897 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1928:27: required from 'bool seqan::_goDownString(Iter > >&, const TString&, TSize&) [with TIndex = Index > > >; TSpec = Preorder; TString = char [4]; TSize = unsigned int]' 1928 | while (_goDownChar(node, *p_begin)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > > >; TSpec = Preorder; TObject = char [4]]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > > >; TSpec = Preorder; TObject = char [4]]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:18:11: required from here 18 | goDown(it, "SSI"); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1751:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1751 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks<>; TDfsOrder = Preorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks<>]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp:17:20: required from here 17 | if (!goDown(it) && !goRight(it)) | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp:10:62: required from here 10 | Iterator > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp:10:62: required from here 10 | Iterator > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp:15:39: required from here 15 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp:15:39: required from here 15 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:48: required from here 16 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 36%] Linking CXX executable ../bin/demo_dox_index_finder cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -o ../bin/demo_dox_index_finder -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_finder make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks; TDfsOrder = Postorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1586:26: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown >]' 1586 | while (goDown(it)) ; | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:16:12: required from here 16 | goBegin(it); | ~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:14:71: required from here 14 | Iterator > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown >]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1583:15: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown >]' 1583 | goRoot(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:16:12: required from here 16 | goBegin(it); | ~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:14:71: required from here 14 | Iterator > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:19:39: required from here 19 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:19:39: required from here 19 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_length_countSequences.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -MF CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o.d -o CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp [ 36%] Linking CXX executable ../bin/demo_dox_index_iterator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -o ../bin/demo_dox_index_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_iterator make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -MF CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o.d -o CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp [ 36%] Linking CXX executable ../bin/demo_dox_index_iterator_short cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_iterator_short.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o -o ../bin/demo_dox_index_iterator_short -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_iterator_short make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/depend [ 36%] Linking CXX executable ../bin/demo_dox_index_find_repeats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_find_repeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o -o ../bin/demo_dox_index_find_repeats -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o -MF CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o.d -o CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_find_repeats make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -MF CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o.d -o CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:3: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index > > >; TSource = Index > > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > > >; TValue2 = Index > > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index > > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > > >; typename Reference > >::Type = Index > > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > > > >; typename Parameter_::Type>::Type = Index > > >&; typename Haystack::Type = Index > > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:22:16: required from here 22 | while (find(finder, "MISS")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:33:63: required from here 33 | std::cout << "\t\"" << representative(myRepeatIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:33:63: required from here 33 | std::cout << "\t\"" << representative(myRepeatIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:39:60: required from here 39 | std::cout << "\t\"" << representative(myMUMiterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:39:60: required from here 39 | std::cout << "\t\"" << representative(myMUMiterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:59:22: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 59 | if (!open(file, argv[arg])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:59:22: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 59 | if (!open(file, argv[arg])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:59:22: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 59 | if (!open(file, argv[arg])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, External > >, Owner<> >, IndexEsa<> >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, External > >, Owner<> >, IndexEsa<> >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet, External > >, Owner<> >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexEsa<> >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexEsa<> >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:59:22: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 59 | if (!open(file, argv[arg])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:59:22: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 59 | if (!open(file, argv[arg])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:21:60: required from here 21 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 36%] Linking CXX executable ../bin/demo_dox_index_maxrepeats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_maxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -o ../bin/demo_dox_index_maxrepeats -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_maxrepeats make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -MF CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o.d -o CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, External > >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, External > >, Owner<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String > >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String > >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >; TLimitsString = seqan::String > >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, External > >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = long long unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:37: required from here 149 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexEsa<> >]' 12 | typename Iterator::Type it(esa, minLen); // set minimum MUM length | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::Alloc<>]' 72 | findMUMs(index, minLen); | ~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:151:34: required from here 151 | return runMummy >(argc, argv, seqCount, optMinLen); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:3: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here 90 | std::cout << "\t\"" << representative(myConstrainedIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here 90 | std::cout << "\t\"" << representative(myConstrainedIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 37%] Linking CXX executable ../bin/demo_dox_index_node_predicate cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -o ../bin/demo_dox_index_node_predicate -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_node_predicate make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -MF CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o.d -o CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp [ 37%] Linking CXX executable ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -o ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -MF CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o.d -o CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/shape_hash_init.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/shape_hash_init.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/shape_hash_init.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX executable ../bin/demo_dox_index_shape_hash_init cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_shape_hash_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -o ../bin/demo_dox_index_shape_hash_init -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_shape_hash_init make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake "--color=" [ 37%] Linking CXX executable ../bin/demo_dox_index_length_countSequences cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_length_countSequences.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -MF CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o.d -o CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/sufarray.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -o ../bin/demo_dox_index_length_countSequences -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -MF CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o.d -o CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:109:21: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 109 | suffixArray << creator; | ~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 107 | creator_t creator(unsigner, stringSetLimits(stringSet)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:17:16: required from here 17 | indexCreate(saveIndex, FibreSA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:3: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/sufarray.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/sufarray.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs.h:121:33: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > >; TSize = unsigned int]' 121 | minLength(_minLength) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:19:74: required from here 19 | Iterator::Type myRepeatIterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here 34 | std::cout << "\t\"" << representative(myRepeatIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here 34 | std::cout << "\t\"" << representative(myRepeatIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX executable ../bin/demo_dox_index_sufarray cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_sufarray.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -o ../bin/demo_dox_index_sufarray -lrt -lz -lbz2 [ 37%] Linking CXX executable ../bin/demo_dox_index_mums cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mums.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_sufarray make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/depend /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -o ../bin/demo_dox_index_mums -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build [ 37%] Built target demo_dox_index_mums make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o -MF CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o.d -o CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp [ 37%] Linking CXX executable ../bin/demo_dox_index_supermaxrepeats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_supermaxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -o ../bin/demo_dox_index_supermaxrepeats -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_supermaxrepeats make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -MF CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o.d -o CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/enumerate_strings.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -MF CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o.d -o CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/get_terminal_size.cpp [ 38%] Linking CXX executable ../bin/demo_dox_misc_get_terminal_size cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_get_terminal_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -o ../bin/demo_dox_misc_get_terminal_size -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Built target demo_dox_misc_get_terminal_size make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -MF CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o.d -o CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/enumerate_strings.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/enumerate_strings.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = String >]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = String >; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:22:18: required from here 22 | findIntervals(results, tree, 550, 900); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ [ 38%] Linking CXX executable ../bin/demo_dox_misc_enumerate_strings cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_enumerate_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -o ../bin/demo_dox_misc_enumerate_strings -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Built target demo_dox_misc_enumerate_strings make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -MF CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o.d -o CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/name_store_cache.cpp [ 38%] Linking CXX executable ../bin/demo_dox_index_textAt_indexText_saAt_indexRequire cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o -o ../bin/demo_dox_index_textAt_indexText_saAt_indexRequire -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Built target demo_dox_index_textAt_indexText_saAt_indexRequire make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -MF CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o.d -o CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:42: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 427 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = String >; TSpec = CyclicShape > >; typename Size > >::Type = unsigned int]' 689 | return end(me, Standard()) - begin(me, Standard()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp:28:63: required from here 28 | std::cout << "length: " << length(str) << " => " << length(modStr) << std::endl; | ~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >]' 371 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, ModCyclicShape > > > >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; typename Iterator >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape > > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape > > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp:27:35: required from here 27 | std::cout << str << " => " << modStr << std::endl; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ [ 38%] Linking CXX executable ../bin/demo_dox_misc_interval_tree_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_interval_tree_example.dir/link.txt --verbose=1 [ 38%] Linking CXX executable ../bin/demo_dox_misc_name_store_cache /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -o ../bin/demo_dox_misc_interval_tree_example -lrt -lz -lbz2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_name_store_cache.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -o ../bin/demo_dox_misc_name_store_cache -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Built target demo_dox_misc_interval_tree_example make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/DependInfo.cmake "--color=" [ 38%] Built target demo_dox_misc_name_store_cache make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string.dir/DependInfo.cmake "--color=" [ 38%] Building CXX object demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o -MF CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o.d -o CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -MF CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o.d -o CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:132: In member function 'seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >& seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::operator=(seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >&&)', inlined from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::first() [with TSequence = seqan::ConcatenatorManyToOne, seqan::External > >, seqan::Owner<> > >; TSpec = seqan::Source<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:317:51, inlined from 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_lcp_core.h:253:63: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/iter_concat_virtual.h:87:7: warning: '.seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::host' may be used uninitialized [-Wmaybe-uninitialized] 87 | class Iter > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:67: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h: In function 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:317:53: note: '' declared here 317 | if (!(rest -= length(buffer))) source = ISource(); | ^~~~~~~~~ In member function 'seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >& seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::operator=(seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >&&)', inlined from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::first() [with TSequence = seqan::ConcatenatorManyToOne, seqan::External > >, seqan::Owner<> > >; TSpec = seqan::Source<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:317:51, inlined from 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_lcp_core.h:253:63: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/iter_concat_virtual.h:87:7: warning: '.seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::objNo' may be used uninitialized [-Wmaybe-uninitialized] 87 | class Iter > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h: In function 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:317:53: note: '' declared here 317 | if (!(rest -= length(buffer))) source = ISource(); | ^~~~~~~~~ In member function 'seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >& seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::operator=(seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >&&)', inlined from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TSequence = seqan::ConcatenatorManyToOne, seqan::External > >, seqan::Owner<> > >; TSpec = seqan::Source<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:328:51, inlined from 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_lcp_core.h:346:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/iter_concat_virtual.h:87:7: warning: '.seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::host' may be used uninitialized [-Wmaybe-uninitialized] 87 | class Iter > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h: In function 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:328:53: note: '' declared here 328 | if (!(rest -= length(buffer))) source = ISource(); | ^~~~~~~~~ In member function 'seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >& seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::operator=(seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >&&)', inlined from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TSequence = seqan::ConcatenatorManyToOne, seqan::External > >, seqan::Owner<> > >; TSpec = seqan::Source<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:328:51, inlined from 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_lcp_core.h:346:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/iter_concat_virtual.h:87:7: warning: '.seqan::Iter, seqan::External > >, seqan::Owner<> >, seqan::ConcatVirtual<> >::objNo' may be used uninitialized [-Wmaybe-uninitialized] 87 | class Iter > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h: In function 'void seqan::_lcpProcessMulti(TTextInput&, const TLimitsString&, TInvertedSAInput&, TDest&, LcpConfig) [with TTextInput = Pipe, External > >, Owner<> > >, Source<> >; TLimitsString = String > >; TInvertedSAInput = Pool >, 2, void>, void>, MapperSpec >, 2, void>, void>, String > >, long long unsigned int>, long long unsigned int, File > > > >; TDest = Pool, MapperSpec, long long unsigned int>, long long unsigned int, File > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_source.h:328:53: note: '' declared here 328 | if (!(rest -= length(buffer))) source = ISource(); | ^~~~~~~~~ [ 39%] Linking CXX executable ../bin/demo_dox_modifier_cyclic_shape cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_cyclic_shape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -o ../bin/demo_dox_modifier_cyclic_shape -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_modifier_cyclic_shape make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o -MF CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o.d -o CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_mod_view.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:9: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:8: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >]' 386 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = ModifiedString >, ModCyclicShape > > > >; typename Iterator::Type>::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:58:28: required from here 58 | TModIter it = begin(modStr); | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 1> > > >; TSource = const ModifiedString >, ModCyclicShape >, 1> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 1> > > >; TSource = const ModifiedString >, ModCyclicShape >, 1> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const ModifiedString > >&, Tag) [with THost = String >; TSpec = FixedShape<2, GappedShape >, 1>; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 1> > > >]' 371 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, ModCyclicShape >, 1> > > >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 1> > > >; typename Iterator >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape >, 1> > > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape >, 1> > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape >, 1> > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:32:39: required from here 32 | std::cout << str << " => " << modStr << std::endl; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 1> >& seqan::CyclicShape >, 1> >::operator=(const seqan::CyclicShape >, 1> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 1> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 2; unsigned int RightOffset = 1; int P00 = 1; int P01 = 1; int P02 = 3; int P03 = 2; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, 1> > > >; TSource = const ModifiedString >, ModCyclicShape >, 1> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, 1> > > >; TSource = const ModifiedString >, ModCyclicShape >, 1> > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const ModifiedString > >&, Tag) [with THost = String >; TSpec = FixedShape<2, GappedShape >, 1>; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, 1> > > >]' 427 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = String >; TSpec = CyclicShape >, 1> >; typename Size > >::Type = unsigned int]' 689 | return end(me, Standard()) - begin(me, Standard()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape >, 1> > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1086 | write(target, iter, length(cont)); | ~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape >, 1> > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:32:39: required from here 32 | std::cout << str << " => " << modStr << std::endl; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 1> >& seqan::CyclicShape >, 1> >::operator=(const seqan::CyclicShape >, 1> >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 1> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 2; unsigned int RightOffset = 1; int P00 = 1; int P01 = 1; int P02 = 3; int P03 = 2; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' 288 | CyclicShape(CyclicShape const &) | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Rooted_; typename Iterator > >, const Tag >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >]' 371 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString >, ModCyclicShape > > > >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >; typename Iterator >::Type = ModifiedIterator >, AdaptorIterator > >, ModCyclicShape > > > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape > > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape > > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:51:39: required from here 51 | std::cout << str << " => " << modStr << std::endl; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, True) [with TDest = ModifiedIterator > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = ModifiedIterator > > > >; TSource = const ModifiedString >, ModCyclicShape > > > >]' 458 | _copyCargoImpl(me, _origin, typename IsSameType< | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | typename RemoveConst_::Type >::Type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | typename RemoveConst_::Type>::Type >::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const ModifiedString > >&, Tag) [with THost = String >; TSpec = GappedShape >; TTagSpec = Standard_; typename Iterator > >, const Tag >::Type = ModifiedIterator > > > >]' 427 | _copyCargo(tmp, me); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const ModifiedString >&) [with THost = String >; TSpec = CyclicShape > >; typename Size > >::Type = unsigned int]' 689 | return end(me, Standard()) - begin(me, Standard()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = ModifiedString >, ModCyclicShape > > > >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1086 | write(target, iter, length(cont)); | ~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ostream; THost = String >; TSpec = ModCyclicShape > > >]' 801 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape_snippets.cpp:51:39: required from here 51 | std::cout << str << " => " << modStr << std::endl; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] 452 | cargo(me) = cargo(_origin); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_mod_view.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_mod_view.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_mod_view.cpp:9:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 9 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 39%] Linking CXX executable ../bin/demo_dox_modifier_modified_string cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -o ../bin/demo_dox_modifier_modified_string -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_modifier_modified_string make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -MF CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o.d -o CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp [ 39%] Linking CXX executable ../bin/demo_dox_modifier_cyclic_shape_snippets cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o -o ../bin/demo_dox_modifier_cyclic_shape_snippets -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_modifier_cyclic_shape_snippets make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o -MF CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o.d -o CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/parallel/queue_example.cpp [ 39%] Linking CXX executable ../bin/demo_dox_modifier_modified_string_mod_view cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o -o ../bin/demo_dox_modifier_modified_string_mod_view -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_modifier_modified_string_mod_view make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o -MF CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o.d -o CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/parallel/splitter_example.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 39%] Linking CXX executable ../bin/demo_dox_parallel_splitter_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_parallel_splitter_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o -o ../bin/demo_dox_parallel_splitter_example -lrt -lz -lbz2 [ 39%] Linking CXX executable ../bin/demo_dox_parallel_queue_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_parallel_queue_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o -o ../bin/demo_dox_parallel_queue_example -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_parallel_splitter_example make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o -MF CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o.d -o CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/pipe/pool_sorter.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_parallel_queue_example make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -MF CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o.d -o CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp [ 40%] Linking CXX executable ../bin/demo_dox_modifier_modified_string_nested cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -o ../bin/demo_dox_modifier_modified_string_nested -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_modifier_modified_string_nested make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o -MF CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o.d -o CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_add_seed.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/pipe/pool_sorter.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/pipe/pool_sorter.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/pipe/pool_sorter.cpp:13:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 13 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_add_seed.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_add_seed.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 40%] Linking CXX executable ../bin/demo_dox_pipe_pool_sorter cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_pipe_pool_sorter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o -o ../bin/demo_dox_pipe_pool_sorter -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_pipe_pool_sorter make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -MF CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o.d -o CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable ../bin/demo_dox_index_open_save cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_open_save.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -o ../bin/demo_dox_index_open_save -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_index_open_save make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -MF CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o.d -o CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable ../bin/demo_dox_seeds_seeds_add_seed cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o -o ../bin/demo_dox_seeds_seeds_add_seed -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_seeds_seeds_add_seed make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -MF CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o.d -o CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seq_io/fai_index_example.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable ../bin/demo_dox_score_score cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_score_score.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seq_io/fai_index_example.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seq_io/fai_index_example.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -o ../bin/demo_dox_score_score -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_score_score make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -MF CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o.d -o CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_infix.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable ../bin/demo_dox_seeds_seeds_extension cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_extension.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -o ../bin/demo_dox_seeds_seeds_extension -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_seeds_seeds_extension make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -MF CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o.d -o CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_prefix.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_infix.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_infix.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 41%] Linking CXX executable ../bin/demo_dox_seeds_seeds_chaining cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_chaining.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -o ../bin/demo_dox_seeds_seeds_chaining -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_seeds_seeds_chaining make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -MF CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o.d -o CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_suffix.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 41%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_infix cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_infix -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_prefix.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_prefix.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_sequence_UNUSED_infix make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -MF CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o.d -o CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/container_view_zip.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_suffix.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_suffix.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 41%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_prefix cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_prefix -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_sequence_UNUSED_prefix make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o -MF CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o.d -o CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/container_view_zip.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/container_view_zip.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 41%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_suffix cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_suffix -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_sequence_UNUSED_suffix make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -MF CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o.d -o CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 41%] Linking CXX executable ../bin/demo_dox_sequence_container_view_zip cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_container_view_zip.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -o ../bin/demo_dox_sequence_container_view_zip -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp:93:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 93 | TExplicitPrefix preB(sufA, 3); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:89:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 89 | Segment(typename Parameter_::Type _host, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_sequence_container_view_zip make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -MF CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o.d -o CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:90:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 90 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp:93:33: required from here 93 | TExplicitPrefix preB(sufA, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, SuffixSegment>; typename Parameter_::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:171:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment >, SuffixSegment>; typename Parameter_::Type = Segment >, SuffixSegment>]' 171 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:206:53: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(const Segment&, Standard) [with THost_ = Segment >, SuffixSegment>; typename Iterator, const Tag >::Type = char*; Standard = const Tag]' 206 | typename Parameter_::Type tmpHost = host(me); | ~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1095:69: required from 'typename seqan::EnableIf, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, SuffixSegment>, PrefixSegment>; typename EnableIf, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1095 | typename Iterator::Type iter = begin(cont, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = Segment >, SuffixSegment>; TSpec = PrefixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/segment.cpp:94:18: required from here 94 | std::cout << preB << "\n"; // => "XXx" | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 41%] Linking CXX executable ../bin/demo_dox_sequence_segment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_segment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o -o ../bin/demo_dox_sequence_segment -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_sequence_segment make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o -MF CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o.d -o CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/stringset.cpp [ 43%] Linking CXX executable ../bin/demo_dox_seq_io_fai_index_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seq_io_fai_index_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -o ../bin/demo_dox_seq_io_fai_index_example -lrt -lz -lbz2 [ 43%] Linking CXX executable ../bin/demo_dox_sequence_string cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Built target demo_dox_seq_io_fai_index_example make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -o ../bin/demo_dox_sequence_string -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -MF CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o.d -o CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 43%] Built target demo_dox_sequence_string make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -MF CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o.d -o CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/load_markov_model.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/stringset.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/stringset.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 43%] Linking CXX executable ../bin/demo_dox_sequence_string2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -o ../bin/demo_dox_sequence_string2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Built target demo_dox_sequence_string2 make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -MF CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o.d -o CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/load_markov_model.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/load_markov_model.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX executable ../bin/demo_dox_sequence_stringset cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o -o ../bin/demo_dox_sequence_stringset -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Built target demo_dox_sequence_stringset make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -MF CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o.d -o CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/stream/lexical_cast.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:14: required from here 18 | if (!open(seqFile, toCString(bgPath))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/load_markov_model.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:14: required from here 18 | if (!open(seqFile, toCString(bgPath))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 159 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: note: remove the '< >' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 333 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: note: remove the '< >' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:14: required from here 18 | if (!open(seqFile, toCString(bgPath))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:14: required from here 18 | if (!open(seqFile, toCString(bgPath))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/stream/lexical_cast.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/stream/lexical_cast.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:14: required from here 18 | if (!open(seqFile, toCString(bgPath))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/statistics/load_markov_model.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char [2]]', inlined from 'int main()' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/stream/lexical_cast.cpp:42:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char [2]]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:21:19: required from here 21 | printAlignment(std::cout, layout, store, 1, 30, 130, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 43%] Linking CXX executable ../bin/demo_dox_stream_lexical_cast cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_stream_lexical_cast.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:21:19: required from here 21 | printAlignment(std::cout, layout, store, 1, 30, 130, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:21:19: required from here 21 | printAlignment(std::cout, layout, store, 1, 30, 130, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -o ../bin/demo_dox_stream_lexical_cast -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Built target demo_dox_stream_lexical_cast In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:21:19: required from here 21 | printAlignment(std::cout, layout, store, 1, 30, 130, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:21:19: required from here 21 | printAlignment(std::cout, layout, store, 1, 30, 130, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -MF CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o.d -o CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:14:16: required from here 14 | loadContigs(store, pathGenome.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:14:16: required from here 14 | loadContigs(store, pathGenome.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:14:16: required from here 14 | loadContigs(store, pathGenome.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:14:16: required from here 14 | loadContigs(store, pathGenome.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:16:16: required from here 16 | readRecords(store, bamFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:14:16: required from here 14 | loadContigs(store, pathGenome.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:16:16: required from here 16 | readRecords(store, bamFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:16:16: required from here 16 | readRecords(store, bamFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 43%] Linking CXX executable ../bin/demo_dox_index_mummy cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mummy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o -o ../bin/demo_dox_index_mummy -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 43%] Built target demo_dox_index_mummy make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -MF CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o.d -o CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp:3: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 44%] Linking CXX executable ../bin/demo_dox_statistics_load_markov_model cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_load_markov_model.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -o ../bin/demo_dox_statistics_load_markov_model -lrt -lz -lbz2 /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_dox_statistics_load_markov_model make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -MF CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o.d -o CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 44%] Linking CXX executable ../bin/demo_howto_align_gaps_clipping cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_align_gaps_clipping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -o ../bin/demo_howto_align_gaps_clipping -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_howto_align_gaps_clipping make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 44%] Building CXX object demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -MF CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o.d -o CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = MySeqFormat_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = Tag; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here 66 | MySeqFileIn seqFile(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 44%] Linking CXX executable ../bin/demo_dox_statistics_build_markov_model cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_build_markov_model.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -o ../bin/demo_dox_statistics_build_markov_model -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = Tag; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here 66 | MySeqFileIn seqFile(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = Tag; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here 66 | MySeqFileIn seqFile(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = Tag; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here 66 | MySeqFileIn seqFile(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_dox_statistics_build_markov_model make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = Tag; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here 66 | MySeqFileIn seqFile(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -MF CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o.d -o CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/init_score.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = Tag; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here 66 | MySeqFileIn seqFile(path.c_str()); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:15:26: required from here 15 | if (argc < 2 || !open(seqFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:15:26: required from here 15 | if (argc < 2 || !open(seqFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:15:26: required from here 15 | if (argc < 2 || !open(seqFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:15:26: required from here 15 | if (argc < 2 || !open(seqFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:15:26: required from here 15 | if (argc < 2 || !open(seqFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/init_score.cpp:31: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/init_score.cpp:28: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 44%] Linking CXX executable ../bin/demo_howto_scores_init_score cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_init_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -o ../bin/demo_howto_scores_init_score -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_howto_scores_init_score make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -MF CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o.d -o CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:389:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' 389 | data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:34:49: required from here 34 | TFinder finder(fragStore.readSeqStore[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >; TSize = int]' 1928 | pattern.finderLength = pattern.params.tabooLength + length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:35:20: required from here 35 | while (find(finder, pattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >]' 1866 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >; TSize = int]' 1934 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:35:20: required from here 35 | while (find(finder, pattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1876:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >]' 1876 | finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >; TSize = int]' 1934 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:35:20: required from here 35 | while (find(finder, pattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1845:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >]' 1845 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >; TSize = int]' 1965 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:35:20: required from here 35 | while (find(finder, pattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = const char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:14:31: required from here 14 | if (argc < 2 || !loadReads(fragStore, argv[1])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:389:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' 389 | data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:34:49: required from here 34 | TFinder finder(fragStore.readSeqStore[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = const char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:14:31: required from here 14 | if (argc < 2 || !loadReads(fragStore, argv[1])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1875:33: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >]' 1875 | hostIterator(finder) = begin(tmpHost); | ~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >; TSize = int]' 1934 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:35:20: required from here 35 | while (find(finder, pattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = const char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:14:31: required from here 14 | if (argc < 2 || !loadReads(fragStore, argv[1])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = const char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:14:31: required from here 14 | if (argc < 2 || !loadReads(fragStore, argv[1])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:740:41: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' 740 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<11> >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:35:20: required from here 35 | while (find(finder, pattern, 0.1)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<11> >]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = const char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:14:31: required from here 14 | if (argc < 2 || !loadReads(fragStore, argv[1])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp:27: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp:24: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 44%] Linking CXX executable ../bin/demo_howto_custom_file_endings cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_custom_file_endings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -o ../bin/demo_howto_custom_file_endings -lrt -lz -lbz2 In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_howto_custom_file_endings make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o -MF CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o.d -o CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/using_zip_iterator.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/using_zip_iterator.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/using_zip_iterator.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main(int, char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(Score >&, TSourceIter&, const ScoreMatrixFile&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:140:79, inlined from 'void seqan::read(Score >&, TSourceIter&) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag; TSourceIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:155:9, inlined from 'bool seqan::loadScoreMatrix(Score >&, const char*) [with TValue = int; TSequenceValue = SimpleType; TSpec = Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score/score_matrix_io.h:183:9, inlined from 'int main(int, char**)' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp:61:20: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main(int, char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 44%] Linking CXX executable ../bin/demo_howto_using_zip_iterator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_using_zip_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o -o ../bin/demo_howto_using_zip_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_howto_using_zip_iterator make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -MF CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o.d -o CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp [ 45%] Linking CXX executable ../bin/demo_howto_efficiently_import_sequences cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_efficiently_import_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -o ../bin/demo_howto_efficiently_import_sequences -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_howto_efficiently_import_sequences make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/base.cpp [ 45%] Linking CXX executable ../bin/demo_howto_scores_load_score cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_load_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -o ../bin/demo_howto_scores_load_score -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_howto_scores_load_score make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:18:14: required from here 18 | if (!open(vcfFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:18:14: required from here 18 | if (!open(vcfFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/base.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/base.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/base.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:183: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:95:28: required from 'int seqan::globalAlignment(Align&, const MyersHirschberg&) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; MyersHirschberg = Tag]' 95 | return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/base.cpp:22:20: required from here 22 | globalAlignment(align, seqan::MyersHirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ [ 45%] Linking CXX executable ../bin/demo_dox_store_store_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_store_store_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -o ../bin/demo_dox_store_store_example -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_dox_store_store_example make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp [ 45%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_tutorial_a_first_example_basic_code make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = const char*]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = const char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/code_encapsulation.cpp [ 45%] Linking CXX executable ../bin/demo_howto_filter_similar_sequences cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_filter_similar_sequences.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -o ../bin/demo_howto_filter_similar_sequences -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_howto_filter_similar_sequences make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/example_tags.cpp [ 45%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tags cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/link.txt --verbose=1 [ 45%] Linking CXX executable ../bin/demo_tutorial_a_first_example_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -o ../bin/demo_tutorial_a_first_example_base -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tags -lrt -lz -lbz2 [ 45%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code_detailed cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_tutorial_a_first_example_base make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend [ 45%] Built target demo_tutorial_a_first_example_example_tags make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code_detailed -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/example_tempSubclassing.cpp [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/example_tags_for_print.cpp [ 46%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tempSubclassing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tempSubclassing -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/code_encapsulation.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Built target demo_tutorial_a_first_example_basic_code_detailed In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/code_encapsulation.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/DependInfo.cmake "--color=" [ 46%] Built target demo_tutorial_a_first_example_example_tempSubclassing /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/final_result.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/final_result.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/final_result.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX executable ../bin/demo_tutorial_a_first_example_code_encapsulation cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o -o ../bin/demo_tutorial_a_first_example_code_encapsulation -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Built target demo_tutorial_a_first_example_code_encapsulation make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/example_tags_for_print.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/example_tags_for_print.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 46%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tags_for_print cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tags_for_print -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Built target demo_tutorial_a_first_example_example_tags_for_print make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_3.cpp [ 46%] Linking CXX executable ../bin/demo_tabix_io_tabix_vcf cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tabix_io_tabix_vcf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -o ../bin/demo_tabix_io_tabix_vcf -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Built target demo_tabix_io_tabix_vcf make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/DependInfo.cmake "--color=" [ 46%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_1 -lrt -lz -lbz2 [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_solution_1 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4_templateSubclassing.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 47%] Linking CXX executable ../bin/demo_tutorial_a_first_example_final_result cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_final_result.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -o ../bin/demo_tutorial_a_first_example_final_result -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_final_result make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_3.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_3.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_solution_2 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -MF CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o.d -o CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4_templateSubclassing.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4_templateSubclassing.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_5.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_5.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_solution_3 make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o -MF CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp [ 47%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_solution_4 make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align_assignment1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp:3: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 47%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -MF CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph.cpp [ 48%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_5 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Built target demo_tutorial_a_first_example_solution_5 make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph_assignment1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp:138:20: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 138 | it = begin(row1); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp:139:21: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 139 | itEnd = end(row1); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 48%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_6 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_6 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Built target demo_tutorial_a_first_example_solution_6 make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align_assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -MF CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph_assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX executable ../bin/demo_tutorial_alignment_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o -o ../bin/demo_tutorial_alignment_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Built target demo_tutorial_alignment_align make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -MF CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp [ 48%] Linking CXX executable ../bin/demo_tutorial_alignment_align_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o -o ../bin/demo_tutorial_alignment_align_assignment1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 48%] Built target demo_tutorial_alignment_align_assignment1 make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -MF CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o.d -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_simple.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_simple.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_simple.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX executable ../bin/demo_tutorial_alignment_graph cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_graph.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -o ../bin/demo_tutorial_alignment_graph -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Built target demo_tutorial_alignment_graph make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -MF CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o.d -o CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1.cpp [ 48%] Linking CXX executable ../bin/demo_tutorial_alignment_graph_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o -o ../bin/demo_tutorial_alignment_graph_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Built target demo_tutorial_alignment_graph_assignment1 make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -MF CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1_solution.cpp [ 49%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alphabets_assignment_1 make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/DependInfo.cmake "--color=" [ 49%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs -lrt -lz -lbz2 [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o -MF CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o.d -o CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_bitsPerValue.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o -MF CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o.d -o CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_ordValue.cpp [ 49%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_bitsPerValue cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o -o ../bin/demo_tutorial_alphabets_example_bitsPerValue -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alphabets_example_bitsPerValue make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o -MF CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o.d -o CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_size.cpp [ 49%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_simple cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_simple -lrt -lz -lbz2 [ 49%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1_solution -lrt -lz -lbz2 [ 49%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_ordValue cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o -o ../bin/demo_tutorial_alphabets_example_ordValue -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alignment_scoring_scheme_simple make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alphabets_assignment_1_solution [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -MF CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o.d -o CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/background_and_motivation/example.cpp make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alphabets_example_ordValue make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake "--color=" [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o -MF CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o.d -o CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basic_techniques/base.cpp make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -MF CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o.d -o CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/allocator.cpp [ 50%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_size cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o -o ../bin/demo_tutorial_alphabets_example_size -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_alphabets_example_size make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -MF CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o.d -o CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/base.cpp [ 50%] Linking CXX executable ../bin/demo_tutorial_basic_techniques_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basic_techniques_base.dir/link.txt --verbose=1 [ 50%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_matrix cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o -o ../bin/demo_tutorial_basic_techniques_base -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_matrix -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_basic_techniques_base make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_alignment_scoring_scheme_matrix make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o [ 50%] Linking CXX executable ../bin/demo_tutorial_basics_allocator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_allocator.dir/link.txt --verbose=1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -MF CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o.d -o CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/show_alphabets.cpp [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -MF CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o.d -o CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -o ../bin/demo_tutorial_basics_allocator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_basics_allocator make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -MF CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o.d -o CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/base.cpp [ 50%] Linking CXX executable ../bin/demo_tutorial_background_and_motivation_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_background_and_motivation_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -o ../bin/demo_tutorial_background_and_motivation_example -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_background_and_motivation_example make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -MF CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o.d -o CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp [ 50%] Linking CXX executable ../bin/demo_tutorial_basics_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -o ../bin/demo_tutorial_basics_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_basics_base make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -MF CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution1.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_basics_show_alphabets cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_show_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -o ../bin/demo_tutorial_basics_show_alphabets -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_basics_show_alphabets make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o -MF CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/base.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/base.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_bed_io_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_base.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -o ../bin/demo_tutorial_bed_io_base -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_bed_io_base make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -MF CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_basics_strings cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_strings.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution1.cpp:9:14: required from here 9 | if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -o ../bin/demo_tutorial_basics_strings -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:7:84: required from here 7 | BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution1.cpp:9:14: required from here 9 | if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:7:84: required from here 7 | BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_basics_strings make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -MF CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o.d -o CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp:10:14: required from here 10 | if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp:10:14: required from here 10 | if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = BlastTabular_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = BlastIOContext<>; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::BlastIOContext<>]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp:21:46: required from here 21 | BlastTabularFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = BlastTabular_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = BlastIOContext<>; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::BlastIOContext<>]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp:21:46: required from here 21 | BlastTabularFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:113:43, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'int main()' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp:28:23: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:119:41, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'int main()' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp:28:23: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -o ../bin/demo_tutorial_bed_io_solution3 -lrt -lz -lbz2 [ 51%] Linking CXX executable ../bin/demo_tutorial_bed_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -o ../bin/demo_tutorial_bed_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_bed_io_solution3 make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/DependInfo.cmake "--color=" [ 51%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -o ../bin/demo_tutorial_bed_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -MF CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o.d -o CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp [ 51%] Built target demo_tutorial_bed_io_example1 make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -MF CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o.d -o CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_bed_io_solution1 make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -MF CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o.d -o CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o -o ../bin/demo_tutorial_bed_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_bed_io_solution2 make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -MF CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o.d -o CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/example1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/example1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = BlastTabular_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = BlastIOContext<>; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::BlastIOContext<>]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp:51:50: required from here 51 | BlastTabularFileOut outfile(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast.h:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = BlastTabular_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = BlastIOContext<>; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::BlastIOContext<>]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp:51:50: required from here 51 | BlastTabularFileOut outfile(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = Segment, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::Segment, seqan::InfixSegment>]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = std::__cxx11::basic_string]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:45:19: required from here 45 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:34:19: required from here 34 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:45:19: required from here 45 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:45:19: required from here 45 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:45:19: required from here 45 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:45:19: required from here 45 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:34:19: required from here 34 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:34:19: required from here 34 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:34:19: required from here 34 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:34:19: required from here 34 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*beginPos=*/ 0, /*endPos=*/ 80, 0, 30); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:223: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:223: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 969 | pattern.finderLength = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 941 | finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:910:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 910 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:1006:37: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1006 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' 272 | buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:384:24: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 384 | buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 932 | finder.endPos = length(host(finder)); | ~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 941 | finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 975 | if (!_firstNonRepeatRange(finder, pattern)) return false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:910:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 910 | hostIterator(finder) = begin(host(finder)) + finder.startPos; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:1006:37: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1006 | if (!_nextNonRepeatRange(finder, pattern)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 377 | while (find(filterFinder, filterPattern, maxErrorRate)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' 272 | buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:384:24: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 384 | buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | appendValue(seqs, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole<>; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:463:41: required from 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]' 463 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = const seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 229 | data_iterator(begin(haystack, Rooted())), | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 376 | TFilterFinder filterFinder(*it); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 352 | appendValue(superSet, store.readSeqStore[i]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole<>; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_pigeonhole.h:463:41: required from 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]' 463 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | _patternInit(filterPattern, maxErrorRate); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 334 | buildAllToAllOverlapInfos(infos, readIDs); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 163 | buildAllToAllOverlapInfos(overlapInfos); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 160 | ovlInfoHelper.run(overlapInfos); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = const seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 624 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band)); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 99 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 | scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:23: required from here 51 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 354 | globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' 138 | if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1], | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | it->pos1 + it->numErrors))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' 370 | computeOverlaps(fragments, scores, distances, store, overlapInfos); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' 170 | consBuilder.run(store, overlapInfos); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 141 | aligner.run(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' 145 | reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:29:23: required from here 29 | consensusAlignment(store, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:68: In member function 'constexpr const std::array<_Tp, _Nm>::value_type& std::array<_Tp, _Nm>::operator[](size_type) const [with _Tp = const seqan::BlastMatchField<>::Enum; unsigned int _Nm = 12]', inlined from 'void seqan::_readCommentLinesImpl(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:345:74: /usr/include/c++/14/array:219:24: warning: array subscript 12 is above array bounds of 'std::__array_traits::Enum, 12>::_Type' {aka 'const seqan::BlastMatchField<>::Enum [12]'} [-Warray-bounds=] 219 | return _M_elems[__n]; | ~~~~~~~~^ /usr/include/c++/14/array: In function 'void seqan::_readCommentLinesImpl(BlastRecord&, TFwdIterator&, BlastIOContext&, const BlastTabular&) [with TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; TFwdIterator = Iter >, StreamIterator > >; TScore = Score, Blosum62_> >; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]': /usr/include/c++/14/array:115:55: note: while referencing 'std::array::Enum, 12>::_M_elems' 115 | typename __array_traits<_Tp, _Nm>::_Type _M_elems; | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = long long unsigned int; TSource = String >]', inlined from 'void seqan::_readField(BlastMatch&, BlastRecord&, BlastIOContext&, BlastMatchField<>::Enum) [with TAlignRow0 = Gaps, Alloc<> >, Tag >; TAlignRow1 = Gaps, Alloc<> >, Tag >; TPos = unsigned int; TQId = std::__cxx11::basic_string; TSId = std::__cxx11::basic_string; TScore = Score, Blosum62_> >; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/blast/blast_tabular_in.h:582:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readField(BlastMatch&, BlastRecord&, BlastIOContext&, BlastMatchField<>::Enum) [with TAlignRow0 = Gaps, Alloc<> >, Tag >; TAlignRow1 = Gaps, Alloc<> >, Tag >; TPos = unsigned int; TQId = std::__cxx11::basic_string; TSId = std::__cxx11::basic_string; TScore = Score, Blosum62_> >; TSpecs = {BlastMatch, Alloc >, Tag >, Gaps, Alloc >, Tag >, unsigned int, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, String > >, std::__cxx11::basic_string, std::allocator >, std::vector, std::allocator >, std::allocator, std::allocator > > >, std::__cxx11::basic_string, std::allocator >, unsigned int}; BlastProgram p = seqan::BlastProgram::DYNAMIC; BlastTabularSpec h = seqan::BlastTabularSpec::DYNAMIC]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long long unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = long long unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_blast_io_write_assignment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -o ../bin/demo_tutorial_blast_io_write_assignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_blast_io_write_assignment make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -MF CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution1.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_blast_io_read_assignment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -o ../bin/demo_tutorial_blast_io_read_assignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_blast_io_read_assignment make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o -MF CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution2.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -o ../bin/demo_tutorial_file_io_overview_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_file_io_overview_example1 make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -MF CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_file_io_overview_solution1 make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/DependInfo.cmake "--color=" In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o -MF CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o.d -o CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main(int, const char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_file_io_overview_solution2 make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -MF CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o.d -o CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_file_io_overview_solution3 make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o -MF CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o.d -o CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 51%] Linking CXX executable ../bin/demo_tutorial_fragment_store_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o -o ../bin/demo_tutorial_fragment_store_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_fragment_store_base make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o -MF CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o.d -o CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_with_positions cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_with_positions -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Built target demo_tutorial_consensus_alignment_with_positions make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -MF CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o.d -o CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/example_hashing.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_without_positions cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_without_positions -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:25:19: required from here 25 | printAlignment(std::cout, layout, store, 1, 0, 150, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:25:19: required from here 25 | printAlignment(std::cout, layout, store, 1, 0, 150, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:25:19: required from here 25 | printAlignment(std::cout, layout, store, 1, 0, 150, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Built target demo_tutorial_consensus_alignment_without_positions make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -MF CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o.d -o CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/template_subclassing.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:25:19: required from here 25 | printAlignment(std::cout, layout, store, 1, 0, 150, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:25:19: required from here 25 | printAlignment(std::cout, layout, store, 1, 0, 150, 0, 36); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 52%] Linking CXX executable ../bin/demo_tutorial_generic_programming_template_subclassing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -o ../bin/demo_tutorial_generic_programming_template_subclassing -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Linking CXX executable ../bin/demo_tutorial_generic_programming_example_hashing [ 52%] Built target demo_tutorial_generic_programming_template_subclassing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/link.txt --verbose=1 make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -o ../bin/demo_tutorial_generic_programming_example_hashing -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -MF CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o.d -o CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 52%] Built target demo_tutorial_generic_programming_example_hashing make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -MF CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:16: required from here 16 | loadContigs(store, toCString(fastaFileName)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:18:16: required from here 18 | readRecords(store, file); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:10:39: required from here 10 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:10:39: required from here 10 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 53%] Linking CXX executable ../bin/demo_tutorial_fragment_store_access_aligned_reads cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o -o ../bin/demo_tutorial_fragment_store_access_aligned_reads -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Built target demo_tutorial_fragment_store_access_aligned_reads make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend [ 53%] Linking CXX executable ../bin/demo_tutorial_fragment_store_access_aligned_reads2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -o ../bin/demo_tutorial_fragment_store_access_aligned_reads2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Built target demo_tutorial_fragment_store_access_aligned_reads2 make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -MF CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o.d -o CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp [ 53%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -MF CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o.d -o CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 53%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Built target demo_tutorial_genome_annotations_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o -MF CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o.d -o CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp [ 54%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_hint cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_hint -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 54%] Built target demo_tutorial_genome_annotations_assignment_1_hint make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -MF CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o.d -o CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeRight(const Iter >&) [with TFragmentStore = FragmentStore<>; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp:34:24: required from here 34 | it2 = nodeRight(it); | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:876:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 876 | Iter > tmp(it); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:878:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 878 | return tmp; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::createSibling(Iter >&) [with TFragmentStore = FragmentStore<>; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp:60:24: required from here 60 | it3 = createSibling(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:1071:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 1071 | Iter > siblingIter(it); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:1073:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 1073 | return siblingIter; | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp:19:39: required from here 19 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp:19:39: required from here 19 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_3_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_3_solution -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:11:39: required from here 11 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 54%] Built target demo_tutorial_genome_annotations_assignment_3_solution make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o -MF CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o.d -o CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/base.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 55%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_gff_and_gtf_io_base make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -MF CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o.d -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp [ 55%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_2_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_genome_annotations_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -MF CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o.d -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 55%] Linking CXX executable ../bin/demo_tutorial_fragment_store_display_aligned_reads cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o -o ../bin/demo_tutorial_fragment_store_display_aligned_reads -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_fragment_store_display_aligned_reads make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -MF CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp:12:36: required from here 12 | GffFileIn gffIn(toCString(file)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp:12:36: required from here 12 | GffFileIn gffIn(toCString(file)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp:12:36: required from here 12 | GffFileIn gffIn(toCString(file)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp:12:36: required from here 12 | GffFileIn gffIn(toCString(file)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp:12:36: required from here 12 | GffFileIn gffIn(toCString(file)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp:12:36: required from here 12 | GffFileIn gffIn(toCString(file)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:14: required from here 12 | if (!open(gffIn, toCString(file))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:14: required from here 12 | if (!open(gffIn, toCString(file))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:14: required from here 12 | if (!open(gffIn, toCString(file))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 55%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_4_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_genome_annotations_assignment_4_solution make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -MF CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:14: required from here 13 | if (!open(gffIn, toCString(file))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:14: required from here 13 | if (!open(gffIn, toCString(file))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:14: required from here 13 | if (!open(gffIn, toCString(file))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 55%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -o ../bin/demo_tutorial_genome_annotations_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_genome_annotations_base make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o -MF CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution3.cpp [ 55%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_gff_and_gtf_io_example1 make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -MF CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o.d -o CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter, std::char_traits >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 55%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 55%] Built target demo_tutorial_gff_and_gtf_io_solution1 make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend [ 55%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -MF CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o.d -o CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_gff_and_gtf_io_example2 make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -MF CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o.d -o CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_hmm.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_hmm.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_hmm.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 55%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_gff_and_gtf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -MF CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o.d -o CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../bin/demo_tutorial_graph_graph_algo_scc cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -o ../bin/demo_tutorial_graph_graph_algo_scc -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_graph_graph_algo_scc make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp [ 56%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_gff_and_gtf_io_solution3 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp [ 56%] Linking CXX executable ../bin/demo_tutorial_graph_graph_hmm cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_hmm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -o ../bin/demo_tutorial_graph_graph_hmm -lrt -lz -lbz2 [ 56%] Linking CXX executable ../bin/demo_tutorial_graph_solution_1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_solution_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -o ../bin/demo_tutorial_graph_solution_1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_graph_graph_hmm make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_graph_solution_1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../bin/demo_tutorial_graph_graph_dijkstra cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -o ../bin/demo_tutorial_graph_graph_dijkstra -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_graph_graph_dijkstra make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >; TIndexSpec = void; TSpec = ParentLinks; TDfsOrder = Postorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > > >; TSpec = ParentLinks]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1586:26: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown >]' 1586 | while (goDown(it)) ; | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:23:12: required from here 23 | goBegin(myIterator); | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:19:83: required from here 19 | Iterator > >::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown >]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1583:15: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown >]' 1583 | goRoot(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:23:12: required from here 23 | goBegin(myIterator); | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:19:83: required from here 19 | Iterator > >::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:26:47: required from here 26 | std::cout << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:26:47: required from here 26 | std::cout << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here 22 | std::cout << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here 22 | std::cout << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:17:82: required from here 17 | Iterator > >::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:17:82: required from here 17 | Iterator > >::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:21:47: required from here 21 | std::cout << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks<>; TDfsOrder = Preorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks<>]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2256:24: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Preorder; THideEmptyEdges = True]' 2256 | if (!goDown(it) && !goRight(it)) | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:268:11: required from 'const seqan::Iter& seqan::operator++(Iter&) [with TContainer = Index > >; TSpec = VSTree > >]' 268 | goNext(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:22:11: required from here 22 | ++myIterator; | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:32:62: required from here 32 | Iterator >::Type myIterator2(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index > >; TSpec = Preorder; THideEmptyEdges = True]' 2259 | clear(it); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index > >; TSpec = TopDown >; TTraits = Preorder]' 1660 | goNextImpl(it, traits); | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index > >; TSpec = TopDown >]' 1655 | goNext(it, typename GetVSTreeIteratorTraits< Iter > >::Type()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:268:11: required from 'const seqan::Iter& seqan::operator++(Iter&) [with TContainer = Index > >; TSpec = VSTree > >]' 268 | goNext(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:22:11: required from here 22 | ++myIterator; | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp:21:47: required from here 21 | std::cout << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here 21 | std::cout << representative(iter, Fwd()) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = HistoryStackFM_ >; TTargetSpec = Alloc<>; TValue = HistoryStackFM_ >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, Alloc<> >&; TSource = HistoryStackFM_ >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(Iter >, VSTree > > >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig; TSpec = Preorder]' 494 | appendValue(it.history, h); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(Iter > >, VSTree > >&, const TString&, TSize&, TDirection) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig; TSpec = ParentLinks<>; TString = String, Alloc<> >; TSize = unsigned int; TDirection = Tag]' 92 | _historyPush(_iter(it, TDirection())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(Iter >, VSTree > >&, const TObject&, True, TDirection) [with TText = String, Alloc<> >; TIndexSpec = FMIndex >; TSpec = ParentLinks<>; TObject = String, Alloc<> >; TDirection = Tag]' 271 | return _goDownString(it, obj, dummy, TDirection()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(Iter >, VSTree > >&, const TObject&, const Fwd&) [with TText = String, Alloc<> >; TIndexSpec = FMIndex >; TSpec = ParentLinks<>; TObject = String, Alloc<> >; Fwd = Tag]' 300 | return _goDownObject(it, obj, typename IsSequence::Type(), Fwd()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:7: required from here 17 | goDown(iter, DnaString("TTTC"), Fwd()); // search CTTT in the prefix trie | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:172: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 70 | operator=(HistoryStackFM_ const & _origin) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String, Alloc<> >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here 21 | std::cout << representative(iter, Fwd()) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' 109 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here 18 | Iterator::Type myIterator(myIndex); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = HistoryStackFM_ >*; TParam = HistoryStackFM_ >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = HistoryStackFM_ >; TTargetSpec = Alloc<>; TValue = HistoryStackFM_ >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, Alloc<> >&; TSource = HistoryStackFM_ >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(Iter >, VSTree > > >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig; TSpec = Preorder]' 494 | appendValue(it.history, h); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(Iter > >, VSTree > >&, const TString&, TSize&, TDirection) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig; TSpec = ParentLinks<>; TString = String, Alloc<> >; TSize = unsigned int; TDirection = Tag]' 92 | _historyPush(_iter(it, TDirection())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(Iter >, VSTree > >&, const TObject&, True, TDirection) [with TText = String, Alloc<> >; TIndexSpec = FMIndex >; TSpec = ParentLinks<>; TObject = String, Alloc<> >; TDirection = Tag]' 271 | return _goDownString(it, obj, dummy, TDirection()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(Iter >, VSTree > >&, const TObject&, const Fwd&) [with TText = String, Alloc<> >; TIndexSpec = FMIndex >; TSpec = ParentLinks<>; TObject = String, Alloc<> >; Fwd = Tag]' 300 | return _goDownObject(it, obj, typename IsSequence::Type(), Fwd()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:7: required from here 17 | goDown(iter, DnaString("TTTC"), Fwd()); // search CTTT in the prefix trie | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 70 | operator=(HistoryStackFM_ const & _origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = HistoryStackFM_ >*; TParam = HistoryStackFM_ >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = HistoryStackFM_ >; TTargetSpec = Alloc<>; TValue = HistoryStackFM_ >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, Alloc<> >&; TSource = HistoryStackFM_ >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(Iter >, VSTree > > >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig; TSpec = Preorder]' 494 | appendValue(it.history, h); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(Iter > >, VSTree > >&, const TString&, TSize&, TDirection) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig; TSpec = ParentLinks<>; TString = String, Alloc<> >; TSize = unsigned int; TDirection = Tag]' 92 | _historyPush(_iter(it, TDirection())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(Iter >, VSTree > >&, const TObject&, True, TDirection) [with TText = String, Alloc<> >; TIndexSpec = FMIndex >; TSpec = ParentLinks<>; TObject = String, Alloc<> >; TDirection = Tag]' 271 | return _goDownString(it, obj, dummy, TDirection()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(Iter >, VSTree > >&, const TObject&, const Fwd&) [with TText = String, Alloc<> >; TIndexSpec = FMIndex >; TSpec = ParentLinks<>; TObject = String, Alloc<> >; Fwd = Tag]' 300 | return _goDownObject(it, obj, typename IsSequence::Type(), Fwd()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:7: required from here 17 | goDown(iter, DnaString("TTTC"), Fwd()); // search CTTT in the prefix trie | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType]' 70 | operator=(HistoryStackFM_ const & _origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Alloc<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex >; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FastFMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:114:9: required from 'seqan::Iter >, seqan::VSTree > > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' 114 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:59: required from here 13 | Iter > > > iter(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here 40 | std::cout << getProperty(propMap, value(myIterator)) << '\t' << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here 40 | std::cout << getProperty(propMap, value(myIterator)) << '\t' << representative(myIterator) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 56%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_preorder cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -o ../bin/demo_tutorial_index_iterators_index_preorder -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_index_iterators_index_preorder make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp [ 56%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_property_maps cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -o ../bin/demo_tutorial_index_iterators_index_property_maps -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_index_iterators_index_property_maps make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:17:48: required from here 17 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > >; TSpec = Preorder; TValue = char]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1963:27: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, False) [with TIndex = Index > >; TSpec = Preorder; TObject = char]' 1963 | return _goDownChar(it, obj); | ~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >; TSpec = Preorder; TObject = char]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:25:20: required from here 25 | if (!goDown(it, pattern[repLength(it)])) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1898:23: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1898 | value(it) = nodeDesc; | ~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:17:48: required from here 17 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1897:25: required from 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > >; TSpec = Preorder; TValue = char]' 1897 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1963:27: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, False) [with TIndex = Index > >; TSpec = Preorder; TObject = char]' 1963 | return _goDownChar(it, obj); | ~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >; TSpec = Preorder; TObject = char]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:25:20: required from here 25 | if (!goDown(it, pattern[repLength(it)])) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1751:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1751 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:30:39: required from here 30 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:30:39: required from here 30 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -o ../bin/demo_tutorial_index_iterators_index_search -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_index_iterators_index_search make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:13:48: required from here 13 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:13:48: required from here 13 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > >; TSpec = Preorder; TValue = char]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1928:27: required from 'bool seqan::_goDownString(Iter > >&, const TString&, TSize&) [with TIndex = Index > >; TSpec = Preorder; TString = char [5]; TSize = unsigned int]' 1928 | while (_goDownChar(node, *p_begin)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:17:15: required from here 17 | if (goDown(it, "wood")) | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1898:23: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1898 | value(it) = nodeDesc; | ~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1897:25: required from 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > >; TSpec = Preorder; TValue = char]' 1897 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1928:27: required from 'bool seqan::_goDownString(Iter > >&, const TString&, TSize&) [with TIndex = Index > >; TSpec = Preorder; TString = char [5]; TSize = unsigned int]' 1928 | while (_goDownChar(node, *p_begin)) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1974:29: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, True) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1974 | return _goDownString(it, obj, dummy); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > >; TSpec = Preorder; TObject = char [5]]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:17:15: required from here 17 | if (goDown(it, "wood")) | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1751:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1751 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_search2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o -o ../bin/demo_tutorial_index_iterators_index_search2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_index_iterators_index_search2 make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:10:60: required from here 10 | Iterator< TIndex, TopDown > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:10:60: required from here 10 | Iterator< TIndex, TopDown > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 58%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_bidirectional_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o -o ../bin/demo_tutorial_index_iterators_index_bidirectional_search -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_index_iterators_index_bidirectional_search make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > > >; TSpec = Preorder; TValue = char]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1963:27: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, False) [with TIndex = Index > > >; TSpec = Preorder; TObject = char]' 1963 | return _goDownChar(it, obj); | ~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > > >; TSpec = Preorder; TObject = char]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:21:20: required from here 21 | if (!goDown(it, pattern[repLength(it)])) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1898:23: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1898 | value(it) = nodeDesc; | ~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = StringSet > >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1897:25: required from 'bool seqan::_goDownChar(Iter > >&, TValue) [with TIndex = Index > > >; TSpec = Preorder; TValue = char]' 1897 | _historyPush(it); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1963:27: required from 'bool seqan::_goDownObject(Iter > >&, const TObject&, False) [with TIndex = Index > > >; TSpec = Preorder; TObject = char]' 1963 | return _goDownChar(it, obj); | ~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1985:29: required from 'bool seqan::goDown(Iter > >&, const TObject&) [with TIndex = Index > > >; TSpec = Preorder; TObject = char]' 1985 | return _goDownObject(it, obj, typename IsSequence::Type()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:21:20: required from here 21 | if (!goDown(it, pattern[repLength(it)])) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1751:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1751 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ [ 58%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_assignment2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:26:39: required from here 26 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_assignment2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:26:39: required from here 26 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_index_iterators_iterator_assignment2 make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -MF CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o.d -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp [ 58%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -o ../bin/demo_tutorial_index_iterators_index_assignment1 -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 58%] Built target demo_tutorial_index_iterators_index_assignment1 make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake "--color=" /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -MF CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o.d -o CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:453:21: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 453 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:15:48: required from here 15 | Iterator >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks<>; TDfsOrder = Preorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index >, IndexEsa<> >; TSpec = ParentLinks<>]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:19:20: required from 'void constrainedDFS() [with TIndexSpec = seqan::IndexEsa<>]' 19 | if (!goDown(it) || repLength(it) > 3) | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:34:32: required from here 34 | constrainedDFS >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index >, IndexEsa<> >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:14:63: required from 'void constrainedDFS() [with TIndexSpec = seqan::IndexEsa<>]' 14 | typename Iterator > >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:34:32: required from here 34 | constrainedDFS >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index >, IndexEsa<> >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index >, IndexEsa<> >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:14:63: required from 'void constrainedDFS() [with TIndexSpec = seqan::IndexEsa<>]' 14 | typename Iterator > >::Type it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:34:32: required from here 34 | constrainedDFS >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:18:19: required from 'void constrainedDFS() [with TIndexSpec = seqan::IndexEsa<>]' 18 | std::cout << representative(it) << std::endl; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:34:32: required from here 34 | constrainedDFS >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:18:19: required from 'void constrainedDFS() [with TIndexSpec = seqan::IndexEsa<>]' 18 | std::cout << representative(it) << std::endl; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:34:32: required from here 34 | constrainedDFS >(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = String >; TIndexSpec = void; TSpec = ParentLinks<>; TDfsOrder = Preorder_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >; TSpec = ParentLinks<>]' 1880 | if (_goDown(it, typename GetVSTreeIteratorTraits< Iter > > >::Type())) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:15:20: required from here 15 | if (!goDown(it) && !goRight(it)) | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1838 | oldParentDesc = nodeUp(it); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >; TSpec = Preorder]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1491 | _historyClear(it); | ~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:10:62: required from here 10 | Iterator > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = TopDown<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(Iter, VSTree >&) [with TText = String >; TIndexSpec = IndexEsa<>; TSpec = TopDown<>]' 1492 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 212 | goRoot(*this); | ~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' 349 | TBase(_index) {} | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:10:62: required from here 10 | Iterator > >::Type it(index); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here 14 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here 14 | std::cout << representative(it) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 58%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_index_iterators_iterator_solution3 make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake "--color=" [ 58%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_index_iterators_iterator_solution2 make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -MF CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -MF CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/link.txt --verbose=1 [ 58%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_assignment2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_base -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -o ../bin/demo_tutorial_index_iterators_index_assignment2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_indexed_fasta_io_base make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_index_iterators_index_assignment2 make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -MF CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o.d -o CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -MF CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o.d -o CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 58%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_indexed_fasta_io_solution1 make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -MF CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o.d -o CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, IndexEsa<> >; TSource = Index, Alloc<> >, IndexEsa<> >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, IndexEsa<> >; TValue2 = Index, Alloc<> >, IndexEsa<> >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, IndexEsa<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, IndexEsa<> >; typename Reference > >::Type = Index, Alloc<> >, IndexEsa<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String, Alloc<> >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index, Alloc<> >, IndexEsa<> >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder, Alloc<> >, IndexEsa<> > >; typename Parameter_::Type>::Type = Index, Alloc<> >, IndexEsa<> >&; typename Haystack::Type = Index, Alloc<> >, IndexEsa<> >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = String, Alloc<> >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [6]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [6]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp:12:16: required from here 12 | while (find(esaFinder, "TATAA")) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX executable ../bin/demo_tutorial_indices_assignment_1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -o ../bin/demo_tutorial_indices_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Built target demo_tutorial_indices_assignment_1 make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -MF CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o.d -o CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp [ 59%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Built target demo_tutorial_indexed_fasta_io_solution2 make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o -MF CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o.d -o CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/fm_index.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, IndexEsa<> >; TSource = Index, Alloc<> >, IndexEsa<> >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, IndexEsa<> >; TValue2 = Index, Alloc<> >, IndexEsa<> >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, IndexEsa<> >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, IndexEsa<> >; typename Reference > >::Type = Index, Alloc<> >, IndexEsa<> >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String, Alloc<> >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index, Alloc<> >, IndexEsa<> >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder, Alloc<> >, IndexEsa<> > >; typename Parameter_::Type>::Type = Index, Alloc<> >, IndexEsa<> >&; typename Haystack::Type = Index, Alloc<> >, IndexEsa<> >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = String, Alloc<> >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String, Alloc<> >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [5]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:61:9: required from here 61 | find(esaFinder, "ACGT"); // first occurrence of "ACGT" | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ [ 59%] Linking CXX executable ../bin/demo_tutorial_indices_assignment_2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_assignment_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -o ../bin/demo_tutorial_indices_assignment_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Built target demo_tutorial_indices_assignment_2 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -MF CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, External > >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, Source<> >, Caster >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, External > >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long long unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long long unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long long unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::External > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >, Filter >, long long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long long unsigned int>, long long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Filter >, long long unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/set:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(Index >&, FibreSALF) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSALF = const Tag]' 445 | createSuffixArray(tempSA, text, TAlgo()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:463:23: required from 'bool seqan::indexCreate(Index >&, FibreSA) [with TText = String >; TSpec = void; TConfig = FMIndexConfig; FibreSA = const Tag]' 463 | return indexCreate(index, FibreSALF()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String >; TSpec = FMIndex<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:81:17: required from here 81 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long long unsigned int>, long long unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long long unsigned int>, long long unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String > >; TText = String, External > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = String, External > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, External > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:92:17: required from here 92 | indexRequire(external_index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/fm_index.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/fm_index.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:21:9: required from 'main():: [with auto:5 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' 21 | for (auto occ : getOccurrences(iter)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDir = Tag; TDistanceTag = Tag; uint32_t = unsigned int; uint8_t = unsigned char]' 509 | delegate(iter, needle, errors); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const OptimalSearch&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDistanceTag = Tag]' 556 | _optimalSearchScheme(delegate, it, needle, s.startPos, s.startPos + 1, 0, s, 0, Rev(), TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; unsigned int N = 3; TDistanceTag = Tag]' 571 | _optimalSearchScheme(delegate, it, needle, s, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 592 | _optimalSearchScheme(delegate, it, needle, scheme, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 497 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:21:9: required from 'main():: [with auto:5 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' 21 | for (auto occ : getOccurrences(iter)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDir = Tag; TDistanceTag = Tag; uint32_t = unsigned int; uint8_t = unsigned char]' 509 | delegate(iter, needle, errors); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const OptimalSearch&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDistanceTag = Tag]' 556 | _optimalSearchScheme(delegate, it, needle, s.startPos, s.startPos + 1, 0, s, 0, Rev(), TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; unsigned int N = 3; TDistanceTag = Tag]' 571 | _optimalSearchScheme(delegate, it, needle, s, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 592 | _optimalSearchScheme(delegate, it, needle, scheme, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 59%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -o ../bin/demo_tutorial_iterators_assignment_1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Built target demo_tutorial_iterators_assignment_1 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const CompressedSA, Alloc<> >, void, FMIndexConfig >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]' 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = Segment, Alloc<> >, void, FMIndexConfig >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, void, FMIndexConfig >, InfixSegment>, AdaptorIterator, Alloc<> >, void, FMIndexConfig >, CountingIteratorImpl_ > >, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 362 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:21:9: required from 'main():: [with auto:5 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' 21 | for (auto occ : getOccurrences(iter)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDir = Tag; TDistanceTag = Tag; uint32_t = unsigned int; uint8_t = unsigned char]' 509 | delegate(iter, needle, errors); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const OptimalSearch&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; TDistanceTag = Tag]' 556 | _optimalSearchScheme(delegate, it, needle, s.startPos, s.startPos + 1, 0, s, 0, Rev(), TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, Iter >, VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = main()::; TText = String, Alloc<> >; TIndex = FMIndex<>; TIndexSpec = Preorder; TNeedle = String, Alloc<> >; unsigned int nbrBlocks = 4; unsigned int N = 3; TDistanceTag = Tag]' 571 | _optimalSearchScheme(delegate, it, needle, s, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 592 | _optimalSearchScheme(delegate, it, needle, scheme, TDistanceTag()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -MF CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = String > >; TObject = String, Alloc<> >; TAlgSpec = Skew7]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String > >; TText = String, Alloc<> >; TAlgSpec = Skew7]' 186 | _createSuffixArrayPipelining(sa, s, alg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple, 6, BitPacked<> >, Tag >, SorterSpec, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple, 4, BitPacked<> >, Tag >, SorterSpec, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple, 5, BitPacked<> >, Tag >, SorterSpec, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple, 6, BitPacked<> >, Tag >, MapperSpec, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution1 -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = String, Alloc<> >; TSpec = FMIndex<>; TFibre = FibreSALF_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = String, Alloc<> >; TOccSpec = void; TIndexSpec = FMIndexConfig]' 183 | indexRequire(index, FibreSALF()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >; TSpec = seqan::Preorder]' 211 | _indexRequireTopDownIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:80:9: required from 'seqan::Iter >, seqan::VSTree > >::Iter(TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TSpec = seqan::Preorder; TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > >]' 80 | fwdIter(_index.fwd), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:591:78: required from 'void seqan::find(TDelegate&, Index >&, const String&, const TDistanceTag&) [with unsigned int minErrors = 0; unsigned int maxErrors = 2; TDelegate = main()::; TText = String, Alloc<> >; TIndexSpec = FMIndex<>; TChar = SimpleType; TStringSpec = Alloc<>; TDistanceTag = Tag]' 591 | Iter >, VSTree > > it(index); | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:29:15: required from here 29 | find<0, 2>(delegate, index, pattern, HammingDistance()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 60%] Built target demo_tutorial_index_iterators_iterator_solution1 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o -MF CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_2_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_2_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_2_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 60%] Linking CXX executable ../bin/demo_tutorial_indices_fm_index cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_fm_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o -o ../bin/demo_tutorial_indices_fm_index -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 60%] Built target demo_tutorial_indices_fm_index make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -MF CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_iterators_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -MF CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_2_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_2_solution -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 61%] Built target demo_tutorial_iterators_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -MF CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 61%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_iterators_assignment_3_workshop make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o -MF CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/base.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_iterators_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -MF CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o.d -o CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/sequence_iterator_demo.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_iterators_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o -o ../bin/demo_tutorial_iterators_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_iterators_base make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake "--color=" [ 61%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_4_workshop_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_4_workshop_solution -lrt -lz -lbz2 [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/base.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_iterators_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/sequence_iterator_demo.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/sequence_iterator_demo.cpp:5: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 61%] Linking CXX executable ../bin/demo_tutorial_journaled_set_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o -o ../bin/demo_tutorial_journaled_set_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_journaled_set_base make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp [ 62%] Linking CXX executable ../bin/demo_tutorial_iterators_sequence_iterator_demo cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -o ../bin/demo_tutorial_iterators_sequence_iterator_demo -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_iterators_sequence_iterator_demo make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::basic_ostream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp:22:33: required from here 22 | std::cout << "Journal: " << journalStr << std::endl; | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::basic_ostream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp:22:33: required from here 22 | std::cout << "Journal: " << journalStr << std::endl; | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::basic_ostream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp:38:81: required from here 38 | std::cout << "Journaled Sequence " << i << ": " << value(journaledSet, i) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const String >&) [with TStream = std::basic_ostream; TValue = char; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>]' 385 | stream << infix(s._insertionBuffer, value(it).physicalPosition, value(it).physicalPosition + value(it).length); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp:38:81: required from here 38 | std::cout << "Journaled Sequence " << i << ": " << value(journaledSet, i) << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 62%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_journal_string_basic cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -o ../bin/demo_tutorial_journaled_set_example_journal_string_basic -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_journaled_set_example_journal_string_basic make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:264:54: required from here 264 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:264:54: required from here 264 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename RemoveReference::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:301:130: required from here 301 | std::cout << hitSet[i][j] << ": " << infix(value(journalSet, i - 1), hitSet[i][j], hitSet[i][j] + length(pattern)) << "\t"; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:264:54: required from here 264 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:264:54: required from here 264 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename RemoveReference::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:301:130: required from here 301 | std::cout << hitSet[i][j] << ": " << infix(value(journalSet, i - 1), hitSet[i][j], hitSet[i][j] + length(pattern)) << "\t"; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp:264:54: required from here 264 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:50:54: required from here 50 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:50:54: required from here 50 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:50:54: required from here 50 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:50:54: required from here 50 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:50:54: required from here 50 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 62%] Linking CXX executable ../bin/demo_tutorial_indices_find2_index_approx cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -o ../bin/demo_tutorial_indices_find2_index_approx -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_indices_find2_index_approx make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp [ 62%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_join cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_join.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -o ../bin/demo_tutorial_journaled_set_example_join -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_journaled_set_example_join make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:52:54: required from here 52 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:52:54: required from here 52 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:52:54: required from here 52 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:52:54: required from here 52 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:52:54: required from here 52 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 62%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_online_search_assignment1_hint cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o -o ../bin/demo_tutorial_journaled_set_example_online_search_assignment1_hint -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_journaled_set_example_online_search_assignment1_hint make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:118:54: required from here 118 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:118:54: required from here 118 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:118:54: required from here 118 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:118:54: required from here 118 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:118:54: required from here 118 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:177:54: required from here 177 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:177:54: required from here 177 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename RemoveReference::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:216:130: required from here 216 | std::cout << hitSet[i][j] << ": " << infix(value(journalSet, i - 1), hitSet[i][j], hitSet[i][j] + length(pattern)) << "\t"; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:177:54: required from here 177 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:177:54: required from here 177 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename RemoveReference::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:216:130: required from here 216 | std::cout << hitSet[i][j] << ": " << infix(value(journalSet, i - 1), hitSet[i][j], hitSet[i][j] + length(pattern)) << "\t"; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:177:54: required from here 177 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 62%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_online_search cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o -o ../bin/demo_tutorial_journaled_set_example_online_search -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_journaled_set_example_online_search make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -MF CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Linking CXX executable ../bin/demo_tutorial_indices_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -o ../bin/demo_tutorial_indices_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_indices_base make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -MF CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:250:54: required from here 250 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:250:54: required from here 250 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename RemoveReference::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:287:130: required from here 287 | std::cout << hitSet[i][j] << ": " << infix(value(journalSet, i - 1), hitSet[i][j], hitSet[i][j] + length(pattern)) << "\t"; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:250:54: required from here 250 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:250:54: required from here 250 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename RemoveReference::Type = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >; typename Iterator >::Type = Iter, Journaled, SortedArray, Alloc<> > >, InfixSegment>, AdaptorIterator, Journaled, SortedArray, Alloc<> > >, JournaledStringIterSpec > >, Tag > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment, Journaled, SortedArray, Alloc<> > >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = String, Journaled, SortedArray, Alloc<> > >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:287:130: required from here 287 | std::cout << hitSet[i][j] << ": " << infix(value(journalSet, i - 1), hitSet[i][j], hitSet[i][j] + length(pattern)) << "\t"; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:250:54: required from here 250 | SeqFileIn databaseFile(toCString(seqDatabasePath)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(TDeltaPos, TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = unsigned int; TStorePos = unsigned int; TDeltaPos = unsigned int; TDeltaRecord = seqan::Pair >; TCoverage = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:530:17: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const seqan::DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' 530 | TEntry(deltaPos, TDeltaRecord(DELTA_TYPE_DEL, storePos), coverage, endType)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:42:11: required from here 42 | insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:114:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 114 | deltaCoverage(_coverage), | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = unsigned int; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 290 | advance(traverser, steps, observer, TProxySelector()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:9: required from here 60 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here 830 | auto child = *parentPtr; | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(String&, TPosition, const TValue&, Tag) [with TTargetValue = DeltaMapEntry; TTargetSpec = Alloc<>; TPosition = int; TValue = DeltaMapEntry; TExpand = TagGenerous_]' 1410 | InsertValueToString_ >::insertValue_(me, pos, _value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = String, Alloc<> >&; TPosition = int; TValue = DeltaMapEntry]' 1010 | insertValue(std::forward(me), pos, std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:529:16: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const seqan::DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' 529 | insertValue(mapIt._mapPtr->_entries, mapIt - begin(*mapIt._mapPtr, Standard()), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 | TEntry(deltaPos, TDeltaRecord(DELTA_TYPE_DEL, storePos), coverage, endType)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:42:11: required from here 42 | insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 390 | return impl::positionReference(me); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:19:28: required from 'void MatchPrinter::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' 19 | auto pos = position(trav); | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = JstExtension, Alloc<> >, Tag > >; TCxtPosition = Tag; TTraverser = TraverserImpl, Alloc<> > >, JstTraversalSpec >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; decltype (impl::run(extension._derived, traverser, TCxtPosition()).first) = unsigned int]' 263 | delegate(); | ~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 289 | auto steps = run(algorithm, traverser, delegate); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:9: required from here 60 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 968 | auto tmp = impl::baseNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 392 | return impl::positionBranch(me); | ~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:19:28: required from 'void MatchPrinter::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' 19 | auto pos = position(trav); | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = JstExtension, Alloc<> >, Tag > >; TCxtPosition = Tag; TTraverser = TraverserImpl, Alloc<> > >, JstTraversalSpec >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; decltype (impl::run(extension._derived, traverser, TCxtPosition()).first) = unsigned int]' 263 | delegate(); | ~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 289 | auto steps = run(algorithm, traverser, delegate); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:9: required from here 60 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 999 | auto tmp = impl::activeNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(JstBuffer_&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 503 | impl::create(buffer); | ~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(JstBuffer_&, TJst&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 556 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' 902 | init(buffer(me), container(me)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 282 | init(traverser, observer, TProxySelector()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:9: required from here 60 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 328 | f.setIt = jSetSplitter[jobId]; | ~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const seqan::SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = unsigned int; seqan::SelectValidProxy = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' 580 | child.proxyId = impl::selectProxy(child, Tag()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' 831 | if (impl::createBranch(it, *parentPtr, child, TProxySelector()) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = unsigned int; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 290 | advance(traverser, steps, observer, TProxySelector()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:9: required from here 60 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 528 | auto tmp1 = node.coverage; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = JstTraversalNode, Alloc<> > > >*; TParam = JstTraversalNode, Alloc<> > > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(String >&, TValue&&, Tag) [with TTargetValue = JstTraversalNode, Alloc<> > > >; unsigned int SPACE = 4096; TValue = JstTraversalNode, Alloc<> > > >; TExpand = TagGenerous_]' 402 | valueConstruct(me.lastValue, std::forward(value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >, Block<> >&; TSource = JstTraversalNode, Alloc<> > > >]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' 175 | appendValue(impl::stack(me), std::forward(node)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' 926 | impl::pushNode(me, std::move(node), observer); // Push onto stack. | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Tag > > >&>; TProxySelector = SelectValidProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Tag > > >&>]' 282 | init(traverser, observer, TProxySelector()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Tag > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:9: required from here 60 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = DeltaMapEntry*; TParam = DeltaMapEntry]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = DeltaMapEntry*; TSource1 = DeltaMapEntry*; TSource2 = DeltaMapEntry*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = DeltaMapEntry]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = DeltaMapEntry]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1697 | _reserveStorage(seq, new_capacity, tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1136:19: required from 'typename seqan::Size::Type seqan::reserve(T&&, TSize) [with T = String, Alloc<> >&; TSize = int; typename Size::Type = unsigned int]' 1136 | return reserve(std::forward(me), new_capacity, typename DefaultOverflowExplicit::Type()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:795:16: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 795 | reserve(deltaMap._entries, 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:42:11: required from here 42 | insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment1 make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 63%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -MF CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/assignment1_solution.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -MF CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o.d -o CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -MF CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o.d -o CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/assignment1_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/assignment1_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(TDeltaPos, TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = unsigned int; TStorePos = unsigned int; TDeltaPos = unsigned int; TDeltaRecord = seqan::Pair >; TCoverage = seqan::String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:530:17: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const seqan::DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' 530 | TEntry(deltaPos, TDeltaRecord(DELTA_TYPE_DEL, storePos), coverage, endType)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:35:11: required from here 35 | insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:114:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 114 | deltaCoverage(_coverage), | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = unsigned int; TObserver = std::tuple, Alloc >, Myers > > >&>; TProxySelector = SelectFirstProxy_]' 451 | stepSize = impl::moveWindow(me, nodePtr, stepSize, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Myers > > >&>]' 290 | advance(traverser, steps, observer, TProxySelector()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:9: required from here 49 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here 830 | auto child = *parentPtr; | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(String&, TPosition, const TValue&, Tag) [with TTargetValue = DeltaMapEntry; TTargetSpec = Alloc<>; TPosition = int; TValue = DeltaMapEntry; TExpand = TagGenerous_]' 1410 | InsertValueToString_ >::insertValue_(me, pos, _value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = String, Alloc<> >&; TPosition = int; TValue = DeltaMapEntry]' 1010 | insertValue(std::forward(me), pos, std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:529:16: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const seqan::DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' 529 | insertValue(mapIt._mapPtr->_entries, mapIt - begin(*mapIt._mapPtr, Standard()), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 | TEntry(deltaPos, TDeltaRecord(DELTA_TYPE_DEL, storePos), coverage, endType)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 798 | impl::insert(it, deltaPos, value, coverage, TDeltaType()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:35:11: required from here 35 | insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 390 | return impl::positionReference(me); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:16:28: required from 'void MatchPrinter::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' 16 | auto pos = position(trav); | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = JstExtension, Alloc<> >, Myers > >; TCxtPosition = Tag; TTraverser = TraverserImpl, Alloc<> > >, JstTraversalSpec >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; decltype (impl::run(extension._derived, traverser, TCxtPosition()).first) = unsigned int]' 263 | delegate(); | ~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Myers > > >&>]' 289 | auto steps = run(algorithm, traverser, delegate); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:9: required from here 49 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 968 | auto tmp = impl::baseNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String, seqan::Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const TraverserImpl >&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; typename Position > >::Type = String, Alloc<> >]' 392 | return impl::positionBranch(me); | ~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:16:28: required from 'void MatchPrinter::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' 16 | auto pos = position(trav); | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = JstExtension, Alloc<> >, Myers > >; TCxtPosition = Tag; TTraverser = TraverserImpl, Alloc<> > >, JstTraversalSpec >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; decltype (impl::run(extension._derived, traverser, TCxtPosition()).first) = unsigned int]' 263 | delegate(); | ~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Myers > > >&>]' 289 | auto steps = run(algorithm, traverser, delegate); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:9: required from here 49 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 999 | auto tmp = impl::activeNode(me).coverage; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(JstBuffer_&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 503 | impl::create(buffer); | ~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(JstBuffer_&, TJst&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = Tag]' 556 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::SelectFirstProxy_]' 902 | init(buffer(me), container(me)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Myers > > >&>; TProxySelector = SelectFirstProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Myers > > >&>]' 282 | init(traverser, observer, TProxySelector()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:9: required from here 49 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 328 | f.setIt = jSetSplitter[jobId]; | ~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' 105 | Iter(Iter const & other_) : | ^~~~ [ 63%] Linking CXX executable ../bin/demo_tutorial_metafunctions_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -o ../bin/demo_tutorial_metafunctions_base -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = JstTraversalNode, Alloc<> > > >*; TParam = JstTraversalNode, Alloc<> > > >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(String >&, TValue&&, Tag) [with TTargetValue = JstTraversalNode, Alloc<> > > >; unsigned int SPACE = 4096; TValue = JstTraversalNode, Alloc<> > > >; TExpand = TagGenerous_]' 402 | valueConstruct(me.lastValue, std::forward(value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> > > >, Block<> >&; TSource = JstTraversalNode, Alloc<> > > >]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>]' 175 | appendValue(impl::stack(me), std::forward(node)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::SelectFirstProxy_]' 926 | impl::pushNode(me, std::move(node), observer); // Push onto stack. | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Myers > > >&>; TProxySelector = SelectFirstProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Myers > > >&>]' 282 | init(traverser, observer, TProxySelector()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:9: required from here 49 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = DeltaMapEntry*; TParam = DeltaMapEntry]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = DeltaMapEntry*; TSource1 = DeltaMapEntry*; TSource2 = DeltaMapEntry*]' 511 | valueConstruct(target_begin, std::move(*source_begin)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = DeltaMapEntry]' 1055 | _arrayConstructMoveDefault(source_begin, source_end, target_begin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = DeltaMapEntry]' 1064 | _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = int; TExpand = TagGenerous_]' 1683 | arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = DeltaMapEntry; TSpec = Alloc<>; TSize_ = int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' 1697 | _reserveStorage(seq, new_capacity, tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1136:19: required from 'typename seqan::Size::Type seqan::reserve(T&&, TSize) [with T = String, Alloc<> >&; TSize = int; typename Size::Type = unsigned int]' 1136 | return reserve(std::forward(me), new_capacity, typename DefaultOverflowExplicit::Type()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:795:16: required from 'void seqan::insert(DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = String >; TDeltaType = Tag]' 795 | reserve(deltaMap._entries, 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = String, Alloc<> >; TConfig = DefaultJstConfig, Alloc<> > >; TSpec = Tag; TPos = int; TValue = int; TIds = std::vector; TDeltaType = Tag; typename EnableIf >, void>::Type = void]' 619 | insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:35:11: required from here 35 | insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 86 | class DeltaMapEntry | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_metafunctions_base /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const seqan::SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = unsigned int; seqan::SelectValidProxy = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' 580 | child.proxyId = impl::selectProxy(child, Tag()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::Tag]' 831 | if (impl::createBranch(it, *parentPtr, child, TProxySelector()) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::Tag]' 869 | stepSize = impl::expandNode(me, parentPtr, stepSize, observer, TProxySelector()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:934:25: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::SelectValidProxy_]' 934 | impl::moveWindow(me, basePtr, me._contextSize - 1, observer, Tag()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(TraverserImpl >&, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Myers > > >&>; TProxySelector = SelectValidProxy_]' 407 | impl::init(me, observer, Tag()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:417:9: required from 'void seqan::init(TraverserImpl >&, TObserver&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TObserver = std::tuple, Alloc >, Myers > > >&>]' 417 | init(me, observer, SelectValidProxy()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:437:13: required from 'void seqan::advance(TraverserImpl >&, TSize, TObserver&, const Tag&) [with TJst = JournaledStringTree, Alloc<> > >; TSpec = void; TSize = unsigned int; TObserver = std::tuple, Alloc >, Myers > > >&>; TProxySelector = SelectFirstProxy_]' 437 | init(me, observer); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&; TObserver = std::tuple, Alloc >, Myers > > >&>]' 290 | advance(traverser, steps, observer, TProxySelector()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = JournaledStringTree, Alloc<> > >; TSpec = void; TAlgorithm = JstExtension, Alloc<> >, Myers > >; TDelegate = MatchPrinter, Alloc<> > >, JstTraversalSpec > >&]' 306 | find(traverser, algorithm, delegate, observer); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:9: required from here 49 | find(trav, ext, delegate); | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 528 | auto tmp1 = node.coverage; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -MF CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1.cpp [ 64%] Linking CXX executable ../bin/demo_tutorial_metafunctions_assignment1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -o ../bin/demo_tutorial_metafunctions_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Built target demo_tutorial_metafunctions_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -MF CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp [ 64%] Linking CXX executable ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -o ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -MF CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o.d -o CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modreverse.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp:8:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 8 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 64%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Built target demo_tutorial_modifiers_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake "--color=" [ 64%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1 -lrt -lz -lbz2 [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o -MF CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o.d -o CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Built target demo_tutorial_modifiers_assignment1 make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o -MF CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o.d -o CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/nested.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modreverse.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modreverse.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp:10:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 10 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/nested.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/nested.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 64%] Linking CXX executable ../bin/demo_tutorial_modifiers_modreverse In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modreverse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -o ../bin/demo_tutorial_modifiers_modreverse -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Built target demo_tutorial_modifiers_modreverse make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o -MF CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp [ 65%] Linking CXX executable ../bin/demo_tutorial_modifiers_modview cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modview.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o -o ../bin/demo_tutorial_modifiers_modview -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Built target demo_tutorial_modifiers_modview make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o -MF CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o.d -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp [ 65%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -MF CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o.d -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp [ 65%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/link.txt --verbose=1 [ 65%] Linking CXX executable ../bin/demo_tutorial_modifiers_nested cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o -o ../bin/demo_tutorial_modifiers_nested -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Built target demo_tutorial_modifiers_nested make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp [ 65%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const Graph >&, Align&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TSource = String, Alloc<> >; TSpec2 = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:21: required from 'void seqan::globalMsaAlignment(Align&, const TScore&) [with TSource = String, Alloc<> >; TSpec = Tag; TScore = Score, Blosum80_> >]' 579 | convertAlignment(gAlign, align); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:27:23: required from here 27 | globalMsaAlignment(align, Blosum80(-1, -11)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 994 | for(TSize i = 0; i, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:482:28: required from 'void seqan::globalMsaAlignment(Graph >&, TStringSet1&, TNames&, const MsaOptions&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TStringSet1 = StringSet, Alloc<> >, Dependent > >; TNames = String > >; TAlphabet = SimpleType; TScore = Score, Blosum80_> >]' 482 | buildAlignmentGraph(matches, scores, g, FractionalScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:568:23: required from 'void seqan::globalMsaAlignment(Graph >&, const TScore&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TScore = Score, Blosum80_> >]' 568 | globalMsaAlignment(gAlign, sequenceSet, sequenceNames, msaOpt); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:578:23: required from 'void seqan::globalMsaAlignment(Align&, const TScore&) [with TSource = String, Alloc<> >; TSpec = Tag; TScore = Score, Blosum80_> >]' 578 | globalMsaAlignment(gAlign, scoreObject); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:27:23: required from here 27 | globalMsaAlignment(align, Blosum80(-1, -11)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const Graph >&, Align&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TSource = String, Alloc<> >; TSpec2 = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:21: required from 'void seqan::globalMsaAlignment(Align&, const TScore&) [with TSource = String, Alloc<> >; TSpec = Tag; TScore = Score >]' 579 | convertAlignment(gAlign, align); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:40:23: required from here 40 | globalMsaAlignment(align, SimpleScore(5, -3, -1, -3)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 994 | for(TSize i = 0; i, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const Graph >&, Align&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TSource = String, Alloc<> >; TSpec2 = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:21: required from 'void seqan::globalMsaAlignment(Align&, const TScore&) [with TSource = String, Alloc<> >; TSpec = Tag; TScore = Score, Blosum62_> >]' 579 | convertAlignment(gAlign, align); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp:31:23: required from here 31 | globalMsaAlignment(align, Blosum62(-1, -11)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 994 | for(TSize i = 0; i, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:482:28: required from 'void seqan::globalMsaAlignment(Graph >&, TStringSet1&, TNames&, const MsaOptions&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TStringSet1 = StringSet, Alloc<> >, Dependent > >; TNames = String > >; TAlphabet = SimpleType; TScore = Score >]' 482 | buildAlignmentGraph(matches, scores, g, FractionalScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:568:23: required from 'void seqan::globalMsaAlignment(Graph >&, const TScore&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TScore = Score >]' 568 | globalMsaAlignment(gAlign, sequenceSet, sequenceNames, msaOpt); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:578:23: required from 'void seqan::globalMsaAlignment(Align&, const TScore&) [with TSource = String, Alloc<> >; TSpec = Tag; TScore = Score >]' 578 | globalMsaAlignment(gAlign, scoreObject); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:40:23: required from here 40 | globalMsaAlignment(align, SimpleScore(5, -3, -1, -3)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' 136 | matchRefinement(matches,strSet,outGraph); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:482:28: required from 'void seqan::globalMsaAlignment(Graph >&, TStringSet1&, TNames&, const MsaOptions&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TStringSet1 = StringSet, Alloc<> >, Dependent > >; TNames = String > >; TAlphabet = SimpleType; TScore = Score, Blosum62_> >]' 482 | buildAlignmentGraph(matches, scores, g, FractionalScore()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:568:23: required from 'void seqan::globalMsaAlignment(Graph >&, const TScore&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TScore = Score, Blosum62_> >]' 568 | globalMsaAlignment(gAlign, sequenceSet, sequenceNames, msaOpt); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:578:23: required from 'void seqan::globalMsaAlignment(Align&, const TScore&) [with TSource = String, Alloc<> >; TSpec = Tag; TScore = Score, Blosum62_> >]' 578 | globalMsaAlignment(gAlign, scoreObject); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp:31:23: required from here 31 | globalMsaAlignment(align, Blosum62(-1, -11)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 65%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_banded cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_banded -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_banded make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:183: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(Gaps&, Gaps&, const MyersHirschberg&) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; MyersHirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:95:28: required from 'int seqan::globalAlignment(Align&, const MyersHirschberg&) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; MyersHirschberg = Tag]' 95 | return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:26:32: required from here 26 | int score = globalAlignment(align, MyersHirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:23: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 348 | finger1 = col_; | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 368 | finger2 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 370 | finger1 = col_; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:36: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 398 | finger1 = begin(matrix_); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:27: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 423 | it_ = finger1; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = String > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_io.h:209:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = String > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_io.h:209:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = String > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_io.h:209:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, TCoffeeLib) [with TFile = std::basic_ifstream; TFragment = Fragment<>; TSpec = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TNames = String > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:177: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h: In instantiation of 'TScoreValue seqan::_globalAlignment(Gaps&, Gaps&, const Score&, const Hirschberg&) [with TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; Hirschberg = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:72:28: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score >&, const Hirschberg&) [with TSequenceH = String >; TGapsSpecH = Tag; TSequenceV = String >; TGapsSpecV = Tag; TScoreValue = int; Hirschberg = Tag]' 72 | return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:83:27: required from 'TScoreValue seqan::globalAlignment(Align&, const Score >&, const Hirschberg&) [with TSequence = String >; TAlignSpec = Tag; TScoreValue = int; Hirschberg = Tag]' 83 | return globalAlignment(row(align, 0), row(align, 1), scoringScheme, Hirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:22:32: required from here 22 | int score = globalAlignment(align, Score(1, -1, -1), Hirschberg()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 468 | finger1 = col_; | ~~~~~~~~^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:487:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 487 | finger2 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:489:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 489 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:518:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 518 | finger1 = begin(matrix_); | ~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_hirschberg_impl.h:543:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 543 | it_ = finger1; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ [ 66%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_multiple_sequence_alignment_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp [ 66%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_consensus cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_consensus -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_multiple_sequence_alignment_consensus make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 66%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_msa cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_msa -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_multiple_sequence_alignment_msa make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:189: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:748:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 748 | next_best_begin= _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,next_best_end), score_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:235:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 235 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:253:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 253 | finger2 = col_; //points to last column | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:255:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 255 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'typename seqan::Iterator, const seqan::Tag >::Type seqan::_smithWatermanTrace(Gaps&, Gaps&, typename LocalAlignmentFinder::TBoolMatrix&, Iter, CountingIteratorImpl_ > >, const Score&) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; unsigned int DIMENSION = 0; typename Iterator, const Tag >::Type = Iter, CountingIteratorImpl_ > >; typename LocalAlignmentFinder::TBoolMatrix = String]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:37: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:595:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 595 | it_ = source_; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'void seqan::_smithWatermanDeclump(LocalAlignmentFinder&, Gaps&, Gaps&, const Score&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:736:26: required from 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 736 | _smithWatermanDeclump(sw_finder, gapsH, gapsV, score_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:445:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 445 | finger1 = end_col; //points to last column | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:447:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 447 | finger0 = end_col; | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:220:22: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 220 | TStringIteratorH x = x_end; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:37: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:216:33: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 216 | TStringIteratorH x_end = end(strH) - 1; | ~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:30: required from here 34 | while (nextLocalAlignment(ali2, enumerator)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:189: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:748:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 748 | next_best_begin= _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,next_best_end), score_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:235:13: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 235 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:253:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 253 | finger2 = col_; //points to last column | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:255:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 255 | finger1 = col_; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'typename seqan::Iterator, const seqan::Tag >::Type seqan::_smithWatermanTrace(Gaps&, Gaps&, typename LocalAlignmentFinder::TBoolMatrix&, Iter, CountingIteratorImpl_ > >, const Score&) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; unsigned int DIMENSION = 0; typename Iterator, const Tag >::Type = Iter, CountingIteratorImpl_ > >; typename LocalAlignmentFinder::TBoolMatrix = String]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:37: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 714 | best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:595:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 595 | it_ = source_; | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h: In instantiation of 'void seqan::_smithWatermanDeclump(LocalAlignmentFinder&, Gaps&, Gaps&, const Score&) [with TScoreValue = int; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:736:26: required from 'TScoreValue seqan::_smithWatermanGetNext(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 736 | _smithWatermanDeclump(sw_finder, gapsH, gapsV, score_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 107 | return _smithWatermanGetNext(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:445:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 445 | finger1 = end_col; //points to last column | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:447:17: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 447 | finger0 = end_col; | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:220:22: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 220 | TStringIteratorH x = x_end; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:37: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:44: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 215 | TStringIteratorH x_begin = begin(strH) - 1; | ~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:216:33: required from 'TScoreValue seqan::_smithWatermanGetMatrix(LocalAlignmentFinder&, const TStringH&, const TStringV&, const Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = Tag; TStringH = Segment, Alloc<> >, InfixSegment>; TStringV = Segment, Alloc<> >, InfixSegment>]' 216 | TStringIteratorH x_end = end(strH) - 1; | ~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(Gaps&, Gaps&, LocalAlignmentFinder&, const Score&, TScoreValue) [with TSourceH = String, Alloc<> >; TGapsSpecH = Tag; TSourceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' 703 | TScoreValue ret = _smithWatermanGetMatrix(sw_finder, sourceSegment(gapsH), sourceSegment(gapsV), score_,cutoff); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = String, Alloc<> >; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag]' 105 | return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = String, Alloc<> >; TAlignSpec = Tag]' 117 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:30: required from here 21 | while (nextLocalAlignment(ali, enumerator) && count < 3) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp:71:42: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 71 | itGapsPattern = begin(gapsPattern); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp:72:36: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 72 | itGapsEnd = end(gapsPattern); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp [ 66%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp [ 67%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o -MF CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o.d -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp:66:42: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 66 | itGapsPattern = begin(gapsPattern); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp:67:36: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 67 | itGapsEnd = end(gapsPattern); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp:66:42: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 66 | itGapsPattern = begin(gapsPattern); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp:67:36: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 67 | itGapsEnd = end(gapsPattern); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ [ 67%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment2_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment2_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment2_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp:66:42: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 66 | itGapsPattern = begin(gapsPattern); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp:67:36: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 67 | itGapsEnd = end(gapsPattern); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ [ 67%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment3_solution.cpp [ 68%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment4_solution.cpp [ 68%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step5 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment5_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment3_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment3_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment4_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment4_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 68%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step6 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step6 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment5_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment5_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment6_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment6_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment6_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 68%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/base.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/base.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 68%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment4_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Built target demo_tutorial_parsing_command_line_arguments_assignment4_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example1.cpp [ 68%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment3_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment3_solution -lrt -lz -lbz2 [ 69%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake "--color=" [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example1_detailed.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ [ 69%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_base In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_base make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example1_detailed.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example1_detailed.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_own_function.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_own_function.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_own_function.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 69%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_struct.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_struct.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_struct.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 69%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_example1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -MF CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o.d -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/final_solution.cpp [ 69%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed -lrt -lz -lbz2 [ 69%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_modifyString cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_modifyString -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/final_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/final_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 70%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_own_function cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_own_function -lrt -lz -lbz2 [ 70%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 70%] Built target demo_tutorial_parsing_command_line_arguments_example_with_own_function make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/depend [ 70%] Built target demo_tutorial_pattern_matching_assignment1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ [ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp [ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 70%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 70%] Built target demo_tutorial_pattern_matching_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment2_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_approx.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_assignment2 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_exact.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3_solution.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_approx.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_approx.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_exact.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_exact.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexQGram, Tag > >; TSource = Index >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexQGram, Tag > >; TValue2 = Index >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexQGram, Tag > >; typename Reference > >::Type = Index >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexQGram, Tag >; TSpecFinder = const Tag; typename Parameter_ >::Type = Index >, IndexQGram, Tag > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder >, IndexQGram, Tag > > >; typename Parameter_::Type>::Type = Index >, IndexQGram, Tag > >&; typename Haystack::Type = Index >, IndexQGram, Tag > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:569:26: required from 'typename seqan::InfixOnValue::Type seqan::infix(Finder&) [with THaystack = Index >, IndexQGram, Tag > >; TSpec = const Tag; typename InfixOnValue::Type = Segment >, InfixSegment>]' 569 | return infix(haystack(me), beginPosition(me), endPosition(me)); | ~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp:18:98: required from here 18 | std::cout << '[' << beginPosition(finder) << ',' << endPosition(finder) << ")\t" << infix(finder) << std::endl; | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::String >; TShapeSpec = seqan::UngappedShape<4>]' 143 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexQGram, Tag > >; TSource = Index >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexQGram, Tag > >; TValue2 = Index >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexQGram, Tag > >; typename Reference > >::Type = Index >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexQGram, Tag >; TSpecFinder = const Tag; typename Parameter_ >::Type = Index >, IndexQGram, Tag > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder >, IndexQGram, Tag > > >; typename Parameter_::Type>::Type = Index >, IndexQGram, Tag > >&; typename Haystack::Type = Index >, IndexQGram, Tag > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:569:26: required from 'typename seqan::InfixOnValue::Type seqan::infix(Finder&) [with THaystack = Index >, IndexQGram, Tag > >; TSpec = const Tag; typename InfixOnValue::Type = Segment >, InfixSegment>]' 569 | return infix(haystack(me), beginPosition(me), endPosition(me)); | ~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3_solution.cpp:13:98: required from here 13 | std::cout << '[' << beginPosition(finder) << ',' << endPosition(finder) << ")\t" << infix(finder) << std::endl; | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::String >; TShapeSpec = seqan::UngappedShape<4>]' 143 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_approx cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_approx -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_find_approx make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index.cpp [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_exact cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_exact -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_find_exact make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake "--color=" [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment3 -lrt -lz -lbz2 [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -MF CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o.d -o CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_assignment3 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -MF CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o.d -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment3_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -MF CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o.d -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index > >; TSource = Index > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > >; TValue2 = Index > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > >; typename Reference > >::Type = Index > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > > >; typename Parameter_::Type>::Type = Index > >&; typename Haystack::Type = Index > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:569:26: required from 'typename seqan::InfixOnValue::Type seqan::infix(Finder&) [with THaystack = Index > >; TSpec = const Tag; typename InfixOnValue::Type = Segment >, InfixSegment>]' 569 | return infix(haystack(me), beginPosition(me), endPosition(me)); | ~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index.cpp:18:98: required from here 18 | std::cout << '[' << beginPosition(finder) << ',' << endPosition(finder) << ")\t" << infix(finder) << std::endl; | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > >& seqan::Index > >::operator=(const seqan::Index > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index > > >; TSource = Index > > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index > > >; TSource = Index > > >]' 889 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Index > > >; THostValue = seqan::Index > > >]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:89:39: required from 'seqan::Finder, TSpecFinder>::Finder(const TIndex&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TIndex = seqan::Index > > >]' 89 | Finder(TIndex const &_index): index(_index), data_iterator(), data_length(0) | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:18:48: required from here 18 | Finder > finder(haystacks); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index > > >; TSource = Index > > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > > >; TValue2 = Index > > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index > > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > > >; typename Reference > >::Type = Index > > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > > > >; typename Parameter_::Type>::Type = Index > > >&; typename Haystack::Type = Index > > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:569:26: required from 'typename seqan::InfixOnValue::Type seqan::infix(Finder&) [with THaystack = Index > > >; TSpec = const Tag; typename InfixOnValue::Type = Segment >, InfixSegment>]' 569 | return infix(haystack(me), beginPosition(me), endPosition(me)); | ~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:24:98: required from here 24 | std::cout << '[' << beginPosition(finder) << ',' << endPosition(finder) << ")\t" << infix(finder) << std::endl; | ~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_final_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_final_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_parsing_command_line_arguments_final_solution make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o -MF CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o.d -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram.cpp [ 72%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_index cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_index -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_find_index make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -MF CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o.d -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_assignment6 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_assignment6 -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_q_gram_index_index_assignment6 make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -MF CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o.d -o CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_assignment5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_assignment5 -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:16: required from here 23 | while (find(finder, "be")) | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 72%] Built target demo_tutorial_q_gram_index_index_assignment5 make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o -MF CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o.d -o CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_qgram cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_qgram -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_q_gram_index_index_qgram make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_qgram_hash cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_qgram_hash -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_q_gram_index_index_qgram_hash make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:23:19: required from here 23 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 24 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:23:19: required from here 23 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 24 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:23:19: required from here 23 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 24 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:23:19: required from here 23 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 24 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:23:19: required from here 23 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 24 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:27:19: required from here 27 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:27:19: required from here 27 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:27:19: required from here 27 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:16: required from here 18 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:27:19: required from here 27 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:27:19: required from here 27 | printAlignment(std::cout, layout, store, /*contigID=*/ 0, /*posBegin=*/ 1060, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | /*posEnd=*/ 1140, /*lineBegin=*/ 0, /*lineEnd=*/ 100); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:16: required from here 18 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:16: required from here 18 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 395 | TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 504 | return end(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 280 | itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 408 | std::cerr << convert(*itR2); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1138 | _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' 369 | return begin(me, typename DefaultGetIteratorSpec::Type()) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 279 | for (TReadSeqIter it = begin(store.readSeqStore[el.readId]), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1020 | _getReadAsProfile(contigProfile, contigAlignedReads[0]); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = int; TCount = unsigned int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >; TPosition = int]' 513 | insertGaps(gaps, clippedViewPos, 1u); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' 1610 | insertGap(anchorReadGaps, readGapsPos++); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1321 | _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it); | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:18:16: required from here 18 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 162 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 183 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 950 | writeValue(target, convert(getValue(begin_))); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps > >]' 965 | write(it, gaps); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' 363 | std::cerr << "READ GAPS\t" << readGaps << "\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1067 | _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>]' 427 | value(gaps._source) = source; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1163:21: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1163 | assignSource(readGaps, infix(store.readSeqStore[it->readId], windowInfo.readBeginPos, windowInfo.readEndPos)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:16:16: required from here 16 | loadContigs(store, refPath.c_str()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:18:16: required from here 18 | readRecords(store, bamFileIn); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:639:20: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, const TAlgoTag&) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig; TAlgoTag = Tag]' 639 | globalAlignment(profileGaps, readGaps, consScore, alignConfig, /*lowerBand, upperBand, */tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 382 | for (; iter != seqEnd - 1; ++iter) | ~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:639:20: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, const TAlgoTag&) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig; TAlgoTag = Tag]' 639 | globalAlignment(profileGaps, readGaps, consScore, alignConfig, /*lowerBand, upperBand, */tag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' 657 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 | NeedlemanWunsch()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 1209 | _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' 685 | round.run(windowBegin, windowEnd); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' 1801 | realigner.run(contigID, windowBegin, windowEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:21:16: required from here 21 | reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 22 | /*includeReference=*/ true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_sam_and_bam_io_base make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 72%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example1 -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_sam_and_bam_io_example1 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 73%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_index_multiple cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_index_multiple -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Built target demo_tutorial_pattern_matching_find_index_multiple make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/link.txt --verbose=1 [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Built target demo_tutorial_sam_and_bam_io_example2 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 73%] Linking CXX executable ../bin/demo_tutorial_realignment_step1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -o ../bin/demo_tutorial_realignment_step1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Built target demo_tutorial_realignment_step1 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o -MF CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 74%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_solution2 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp [ 74%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example7 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example7 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_example7 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp [ 74%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_solution1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example3.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example3.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/demo_tutorial_realignment_step2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o -o ../bin/demo_tutorial_realignment_step2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_realignment_step2 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example4.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example3.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution3 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_sam_and_bam_io_solution3 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example4.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example4.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_seed_and_extend_example1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example4.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_seed_and_extend_example2 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example5.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example5.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example5 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Built target demo_tutorial_seed_and_extend_example5 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example4 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Built target demo_tutorial_seed_and_extend_example4 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Built target demo_tutorial_seed_and_extend_example3 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/DependInfo.cmake "--color=" [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example6 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example6 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution3.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 76%] Built target demo_tutorial_seed_and_extend_example6 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_<>; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpec = Tag]' 245 | return bandedChainAlignment(align, seedSet, scoreScheme, scoreScheme, AlignConfig<>(), bandExtension); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:30:38: required from here 30 | int result = bandedChainAlignment(alignment, seedChain, scoringScheme, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution2 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Built target demo_tutorial_seed_and_extend_solution2 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:55: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution3.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Built target demo_tutorial_seed_and_extend_solution1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -MF CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o.d -o CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution5 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Built target demo_tutorial_seed_and_extend_solution5 make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o -MF CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o.d -o CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution4 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution4 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Built target demo_tutorial_seed_and_extend_solution4 make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/DependInfo.cmake "--color=" /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o -MF CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/solution1.cpp /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:930:38: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 930 | score = _computeAlignment(localTraceSet[0], noScout, infixH, infixV, scoreSchemeGap, band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 | DPProfile_, TGaps, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, SuffixSegment>; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, SuffixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 509 | TConstSeqVIterator seqVBegin = begin(seqV, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 510 | TConstSeqVIterator seqVEnd = end(seqV, Rooted()); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 381 | TSeqVIterator iter = seqBegin; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, SuffixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_, Tag >, Tag, TracebackOn, Tag > >, Tag >]' 453 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 | scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 515 | _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 | sequenceEntryForScore(scoringScheme, seqH, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | sequenceEntryForScore(scoringScheme, seqV, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | seqVBegin, seqVEnd, scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | MetaColumnDescriptor(), dpProfile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, SuffixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, SuffixSegment>; TSequenceV = Segment, Alloc<> >, SuffixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1336 | score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1337 | scoreSchemeGap, DPBandConfig(), DPProfile_, TGapSpec, TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]' 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, Tag >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = BandedChainAlignment_, Tag >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' 526 | TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1; | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TGapScheme = Tag; TTraceTarget = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = BandedChainAlignment_, Tag >; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1264 | return _computeAlignment(dpContext, traceSegments, scoutState, seqH, seqV, scoreScheme, band, dpProfile); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:873:34: required from 'typename seqan::Value::Type seqan::_initializeBandedChain(TTraceSet&, TScoutState&, const TSeed&, unsigned int, const TSeqH&, const TSeqV&, const TScoreScheme&, const TScoreScheme&, const DPProfile_, TGapCosts, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TScoutState = DPScoutState_ > > >; TSeed = Seed >; TSeqH = String, Alloc<> >; TSeqV = String, Alloc<> >; TScoreScheme = Score >; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGaps = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag; typename Value::Type = int]' 873 | score = _computeAlignment(globalTraceSet, scoutState, infixH, infixV, scoreSchemeGap, DPBandConfig(), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | DPProfile_, TGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | TracebackOn, TExecPolicy>()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, unsigned int, const DPProfile_, TGapSpec, TracebackOn, TExecPolicy>&) [with TTraceSet = StringSet >, Owner<> >; TSeedSet = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; TFreeEndGaps = FreeEndGaps_; TDPMatrixLocation = Tag; TGapSpec = Tag; TTracebackConfig = TracebackConfig_, Tag >; TExecPolicy = Tag]' 1319 | TScoreValue score = _initializeBandedChain(globalTraceSet, scoutState, value(it), bandExtension, seqH, seqV, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 | scoreSchemeAnchor, scoreSchemeGap, profile); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const Score&, const Score&, const AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = TraceSegment_; TStringSetSpec = Owner<>; TSeeds = String > >; TSequenceH = String, Alloc<> >; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag; TGapsPlacement = Tag]' 258 | return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGap, bandExtension, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(Align&, const TSeeds&, const Score&, const Score&, const AlignConfig&, unsigned int) [with TSequence = String, Alloc<> >; TAlignSpec = Tag; TSeeds = String > >; TScoreValue = int; TScoreSpecAnchor = Tag; TScoreSpecGap = Tag; bool TFirstRow = true; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = true; TACSpec = Tag]' 201 | _setupAndRunBandedChainAlignment(traceSet, seedSet, source(row(align, 0)), source(row(align, 1)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | scoreSchemeAnchor, scoreSchemeGap, alignConfig, bandExtension, GapsLeft()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:28:38: required from here 28 | int result = bandedChainAlignment(alignment, seedChain, scoringSchemeAnchor, scoringSchemeGap, alignConfig, 2); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ [ 77%] Built target demo_tutorial_seed_and_extend_solution3 make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/depend In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o -MF CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o.d -o CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/solution1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../bin/demo_tutorial_seeds_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seeds_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o -o ../bin/demo_tutorial_seeds_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Built target demo_tutorial_seeds_example1 make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -MF CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o.d -o CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../bin/demo_tutorial_seeds_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seeds_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o -o ../bin/demo_tutorial_seeds_solution1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Built target demo_tutorial_seeds_solution1 make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -MF CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp:13:47: required from here 13 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp:13:47: required from here 13 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp:13:47: required from here 13 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp:13:47: required from here 13 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp:13:47: required from here 13 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here 11 | SeqFileIn seqFileIn(toCString(seqFileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 77%] Linking CXX executable ../bin/demo_tutorial_sequence_io_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o -o ../bin/demo_tutorial_sequence_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Built target demo_tutorial_sequence_io_base make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -MF CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp [ 77%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example7 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example7 -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Built target demo_tutorial_seed_and_extend_example7 make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -MF CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp [ 78%] Linking CXX executable ../bin/demo_tutorial_sequence_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -o ../bin/demo_tutorial_sequence_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 78%] Built target demo_tutorial_sequence_io_example1 make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -MF CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o.d -o CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -o ../bin/demo_tutorial_sequence_io_solution1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 78%] Built target demo_tutorial_sequence_io_solution1 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_1_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:12:14: required from here 12 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:12:14: required from here 12 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:12:14: required from here 12 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:12:14: required from here 12 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:12:14: required from here 12 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_1_solution.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_1_solution.cpp:5: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:14: required from here 10 | if (!open(seqFileIn, toCString(seqFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 78%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 78%] Built target demo_tutorial_sequences_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_2_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_2_solution.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_2_solution.cpp:5: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution6 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution6 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_seed_and_extend_solution6 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 79%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_2_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_sequences_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3_solution.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 79%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_sequences_assignment_3 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3_solution.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 79%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -o ../bin/demo_tutorial_sequence_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_sequence_io_solution2 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp [ 79%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_sequences_assignment_3_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_6_solution.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ [ 79%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution3.dir/link.txt --verbose=1 [ 79%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_4_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -o ../bin/demo_tutorial_sequence_io_solution3 -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_sequences_assignment_4_solution make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -MF CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_6_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_6_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequence_io_solution3 make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -MF CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_comparisons.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp:5: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 80%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -o ../bin/demo_tutorial_sequence_io_solution4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequence_io_solution4 make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -MF CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_copy.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/base.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/base.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 80%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_5_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_5_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequences_assignment_5_solution make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -MF CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_move.cpp [ 80%] Linking CXX executable ../bin/demo_tutorial_sequences_example_comparisons cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -o ../bin/demo_tutorial_sequences_example_comparisons -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequences_example_comparisons make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -MF CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp [ 80%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_6_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_6_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequences_assignment_6_solution make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o -MF CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_copy.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_copy.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 80%] Linking CXX executable ../bin/demo_tutorial_sequences_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -o ../bin/demo_tutorial_sequences_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequences_base make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_move.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_move.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o -MF CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_segments.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_segments.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 81%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_copy cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_copy -lrt -lz -lbz2 [ 81%] Linking CXX executable ../bin/demo_tutorial_sequences_example_segments cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_segments.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o -o ../bin/demo_tutorial_sequences_example_segments -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_example_conversions_copy make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -MF CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_example_segments make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/DependInfo.cmake "--color=" [ 81%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_move cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_move -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o -MF CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/base.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_example_conversions_move make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o -MF CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o.d -o CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/example_overflow.cpp [ 81%] Linking CXX executable ../bin/demo_tutorial_sequences_example_functionality1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/link.txt --verbose=1 [ 81%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -o ../bin/demo_tutorial_sequences_example_functionality1 -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_example_functionality1 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/base.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp [ 81%] Linking CXX executable ../bin/demo_tutorial_sequences_example_functionality2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o -o ../bin/demo_tutorial_sequences_example_functionality2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_example_functionality2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp [ 82%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Built target demo_tutorial_sequences_in_depth_base make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/example_overflow.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:46: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/base.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ [ 82%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_example_overflow cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/link.txt --verbose=1 /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_example_overflow -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ [ 82%] Built target demo_tutorial_sequences_in_depth_example_overflow make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/depend /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:14: required from here 39 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:14: required from here 39 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 82%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment1 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:34:16: required from here 34 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:34:16: required from here 34 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:34:16: required from here 34 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 82%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_base -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Built target demo_tutorial_simple_rna_seq_base make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = unsigned int]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = unsigned int; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:113:22: required from here 113 | findIntervals(result, intervalTrees[ar.contigId], queryBegin, queryEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:40:14: required from here 40 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:40:14: required from here 40 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:35:16: required from here 35 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:35:16: required from here 35 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:35:16: required from here 35 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:30:14: required from here 30 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:30:14: required from here 30 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:25:16: required from here 25 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:25:16: required from here 25 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:25:16: required from here 25 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:33:14: required from here 33 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:33:14: required from here 33 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:28:16: required from here 28 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:28:16: required from here 28 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:28:16: required from here 28 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:34:14: required from here 34 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:34:14: required from here 34 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:16: required from here 29 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:16: required from here 29 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:16: required from here 29 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 83%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_assignment4 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 83%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment5 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_assignment5 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 83%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o -MF CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o.d -o CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = unsigned int]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = unsigned int; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:110:22: required from here 110 | findIntervals(result, intervalTrees[ar.contigId], queryBegin, queryEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::addInterval(TGraph&, TPropertyMap&, TInterval) [with TGraph = Graph > >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TInterval = IntervalAndCargo > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1363:16: required from 'void seqan::addInterval(IntervalTree&, TInterval) [with TValue = int; TCargo = String >; TInterval = IntervalAndCargo > >]' 1363 | addInterval(itree.g, itree.pm, interval); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:42:16: required from here 42 | addInterval(tree, interval); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1286:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1286 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1299:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1299 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1329:31: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1329 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2) [with TValue = int; TCargo = String >; TValue2 = int]' 1502 | findIntervals(result, it.g, it.pm, query); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:58:18: required from here 58 | findIntervals(results, tree, snpPos); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = String >]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = String >; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:49:18: required from here 49 | findIntervals(results, tree, delBegin, delEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'bool seqan::removeInterval(Graph&, TPropertyMap&, TVertexDescriptor&, TValue, TValue, TCargo) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1882:26: required from 'bool seqan::removeInterval(Graph&, TPropertyMap&, TValue, TValue, TCargo) [with TSpec = Directed >; TPropertyMap = String > >, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = String >]' 1882 | return removeInterval(g, pm, act_knot, i_begin, i_end, i_id); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1893:26: required from 'bool seqan::removeInterval(IntervalTree&, TValue, TValue, TCargo) [with TValue = int; TCargo = String >]' 1893 | return removeInterval(tree.g, tree.pm, i_begin, i_end, i_id); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:66:30: required from here 66 | bool res = removeInterval(tree, 50, 200, iCargo); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1779:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1779 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1786:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1786 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1802:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1802 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const Iter >&) [with TFragmentStore = const FragmentStore<>; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:146:30: required from here 146 | exonIt = nodeDown(transIt); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:853:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 853 | Iter > tmp(it); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:855:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 855 | return tmp; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = unsigned int]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = unsigned int; TValue2 = int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:109:22: required from here 109 | findIntervals(result, intervalTrees[ar.contigId], queryBegin, queryEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:36:14: required from here 36 | if (!open(annotationFile, toCString(annotationFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:16: required from here 31 | readRecords(store, alignmentFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 83%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_interval_tree cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_interval_tree -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_simple_rna_seq_interval_tree make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_1_solution.cpp [ 83%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_1_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_1_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'std::string seqan::getAbsolutePath(const char*)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 83%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_1_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_string_sets_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2_solution.cpp [ 84%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_string_sets_assignment_2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp [ 84%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution3 -lrt -lz -lbz2 In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_simple_rna_seq_genequant_solution3 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 84%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_string_sets_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/base.cpp [ 84%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_3_workshop_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_3_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality.cpp [ 84%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality_2.cpp [ 84%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution4 -lrt -lz -lbz2 In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_simple_rna_seq_genequant_solution4 make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -MF CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o.d -o CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp [ 86%] Linking CXX executable ../bin/demo_tutorial_string_sets_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o -o ../bin/demo_tutorial_string_sets_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 86%] Built target demo_tutorial_string_sets_base make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o -MF CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o.d -o CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/base.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality_2.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality_2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 86%] Linking CXX executable ../bin/demo_tutorial_vcf_io_base In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_base.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o -o ../bin/demo_tutorial_vcf_io_base -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Built target demo_tutorial_vcf_io_base make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o -MF CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o.d -o CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp [ 86%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_functionality cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o -o ../bin/demo_tutorial_string_sets_example_functionality -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Built target demo_tutorial_string_sets_example_functionality make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -MF CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o.d -o CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp [ 86%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_functionality_2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -o ../bin/demo_tutorial_string_sets_example_functionality_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Built target demo_tutorial_string_sets_example_functionality_2 make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o -MF CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o.d -o CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp:8:84: required from here 8 | VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp:8:84: required from here 8 | VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 86%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_iterators cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -o ../bin/demo_tutorial_string_sets_example_iterators -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp:8:84: required from here 8 | VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp:8:84: required from here 8 | VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 86%] Built target demo_tutorial_string_sets_example_iterators make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o -MF CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o.d -o CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp:10:88: required from here 10 | VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp:10:88: required from here 10 | VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 86%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution3.cpp:1: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 86%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -MF CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o.d -o CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/read_vcf.h:192:43, inlined from 'void seqan::readRecord(VcfRecord&, FormattedFile, Tag, TSpec>&) [with TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/vcf_file.h:209:15, inlined from 'int main()' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp:23:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/read_vcf.h:192:43, inlined from 'void seqan::readRecord(VcfRecord&, FormattedFile, Tag, TSpec>&) [with TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/vcf_file.h:209:15, inlined from 'int main()' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp:23:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:617:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying between 0 and 74 bytes from a string of length 82 [-Wstringop-truncation] 617 | strncpy(&buffer[0], file, pos); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(VcfRecord&, VcfIOContext&, TForwardIter&, const Vcf&) [with TForwardIter = Iter, std::char_traits >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/read_vcf.h:192:43, inlined from 'void seqan::readRecord(VcfRecord&, FormattedFile, Tag, TSpec>&) [with TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/vcf_io/vcf_file.h:209:15, inlined from 'int main()' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp:25:23: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o -o ../bin/demo_tutorial_vcf_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Built target demo_tutorial_vcf_io_solution3 make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/alphabet.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution2.dir/link.txt --verbose=1 [ 87%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o -o ../bin/demo_tutorial_vcf_io_solution2 -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -o ../bin/demo_tutorial_vcf_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Built target demo_tutorial_vcf_io_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Built target demo_tutorial_vcf_io_solution2 make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake "--color=" [ 87%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/arg_align.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_vcf_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_example1.dir/link.txt --verbose=1 [ 87%] Linking CXX executable ../bin/demo_unassigned_or_unused_alphabet /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o -o ../bin/demo_tutorial_vcf_io_example1 -lrt -lz -lbz2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_alphabet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o -o ../bin/demo_unassigned_or_unused_alphabet -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Built target demo_tutorial_vcf_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/DependInfo.cmake "--color=" [ 87%] Built target demo_unassigned_or_unused_alphabet make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/DependInfo.cmake "--color=" [ 87%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:139:49: required from here 139 | SeqFileIn seqIn(toCString(options.inputFile)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:139:49: required from here 139 | SeqFileIn seqIn(toCString(options.inputFile)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:139:49: required from here 139 | SeqFileIn seqIn(toCString(options.inputFile)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:157:52: required from here 157 | SeqFileOut seqOut(toCString(options.outputFile)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:139:49: required from here 139 | SeqFileIn seqIn(toCString(options.inputFile)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/arg_align.cpp:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/arg_align.cpp:24: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:14: required from here 76 | if (!open(inSeq, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:14: required from here 76 | if (!open(inSeq, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:14: required from here 76 | if (!open(inSeq, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:14: required from here 76 | if (!open(inSeq, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:14: required from here 76 | if (!open(inSeq, argv[1])) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:37:43: required from here 37 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:43:45: required from here 43 | UcscFileIn file1(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:37:43: required from here 37 | GffFileIn file(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Ucsc_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >, TagList > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag >; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag >; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:43:45: required from here 43 | UcscFileIn file1(toCString(fileName)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, SuffixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, SuffixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:355:10: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const UcscKnownIsoforms&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; UcscKnownIsoforms = Tag >]' 355 | write(target, suffix(record.transName, suf)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:168:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList > >]' 168 | writeRecord(target, record, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:170:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList >, TagList > > >]' 170 | writeRecord(target, record, static_cast::Base const &>(format)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:295:24: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&, const TFormat&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TFormat = TagSelector >, TagList > > > >]' 295 | writeRecord(iter, record, format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:303:17: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 303 | writeRecords(ucscFile, store, format(ucscFile)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:63:21: required from here 63 | writeRecords(file1, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, SuffixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, SuffixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, SuffixSegment>; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, SuffixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, SuffixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, SuffixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, SuffixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_io.h:355:10: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const UcscKnownIsoforms&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; UcscKnownIsoforms = Tag >]' 355 | write(target, suffix(record.transName, suf)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:168:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList > >]' 168 | writeRecord(target, record, TFormat()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/ucsc_io/ucsc_file.h:170:20: required from 'void seqan::writeRecord(TTarget&, const UcscRecord&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TTagList = TagList >, TagList > > >]' 170 | writeRecord(target, record, static_cast::Base const &>(format)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:295:24: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&, const TFormat&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TFormat = TagSelector >, TagList > > > >]' 295 | writeRecord(iter, record, format); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_ucsc.h:303:17: required from 'void seqan::writeRecords(FormattedFile >, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 303 | writeRecords(ucscFile, store, format(ucscFile)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:63:21: required from here 63 | writeRecords(file1, store); | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ [ 87%] Linking CXX executable ../bin/demo_unassigned_or_unused_arg_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_arg_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -o ../bin/demo_unassigned_or_unused_arg_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 87%] Built target demo_unassigned_or_unused_arg_align make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:39: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_bam_library_size cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o -o ../bin/demo_unassigned_or_unused_bam_library_size -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_bam_library_size make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:50: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:18: required from here 280 | if (!open(f, filename)) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:18: required from here 280 | if (!open(f, filename)) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:18: required from here 280 | if (!open(f, filename)) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:18: required from here 280 | if (!open(f, filename)) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:18: required from here 280 | if (!open(f, filename)) | ~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_bam_print_alignments cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o -o ../bin/demo_unassigned_or_unused_bam_print_alignments -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_bam_print_alignments make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream_write.cpp In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream_write.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream_write.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream_write.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 88%] Linking CXX executable ../bin/demo_tutorial_workflows_knime_node cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_workflows_knime_node.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -o ../bin/demo_tutorial_workflows_knime_node -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_tutorial_workflows_knime_node make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:8: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_annotation_converter cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o -o ../bin/demo_unassigned_or_unused_annotation_converter -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_annotation_converter make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_readwrite.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_readwrite.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_readwrite.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:32:33: required from here 32 | SeqFileIn sfin("testfile.fa"); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:32:33: required from here 32 | SeqFileIn sfin("testfile.fa"); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:32:33: required from here 32 | SeqFileIn sfin("testfile.fa"); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:32:33: required from here 32 | SeqFileIn sfin("testfile.fa"); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream_write cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/link.txt --verbose=1 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_format.cpp:32:33: required from here 32 | SeqFileIn sfin("testfile.fa"); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream_write -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_benchmark_stream_write make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_speed.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_readwrite cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o -o ../bin/demo_unassigned_or_unused_file_readwrite -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_file_readwrite make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_speed.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_speed.cpp:4: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:18: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 89%] Linking CXX executable ../bin/demo_unassigned_or_unused_bamutil cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bamutil.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -o ../bin/demo_unassigned_or_unused_bamutil -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_speed cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_speed.dir/link.txt --verbose=1 [ 89%] Built target demo_unassigned_or_unused_bamutil /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -o ../bin/demo_unassigned_or_unused_file_speed -lrt -lz -lbz2 make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/find_wild.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Built target demo_unassigned_or_unused_file_speed make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/gff2gtf.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 89%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:74:20: required from here 74 | loadContigs(fragmentStore, options.referenceFilename); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:17: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:74:20: required from here 74 | loadContigs(fragmentStore, options.referenceFilename); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 89%] Built target demo_unassigned_or_unused_benchmark_stream make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/graph_hmm_silent.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:74:20: required from here 74 | loadContigs(fragmentStore, options.referenceFilename); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:619:22: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 619 | TResult tmp(begin(host(me), tag_)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:812:64: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 812 | typename Iterator::Type sItEnd = end(read, Standard()); | ~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:74:20: required from here 74 | loadContigs(fragmentStore, options.referenceFilename); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:79:16: required from here 79 | readRecords(fragmentStore, ins); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:74:20: required from here 74 | loadContigs(fragmentStore, options.referenceFilename); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:79:16: required from here 79 | readRecords(fragmentStore, ins); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:79:16: required from here 79 | readRecords(fragmentStore, ins); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = ModifiedAlphabet, ModExpand<'-'> >; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = ModifiedAlphabet, ModExpand<'-'> >]' 149 | return convertImpl(Convert(), source); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:92:59: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:17: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:142:17: required from here 142 | writeRecords(outFile, fragmentStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [ 89%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_format cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_format.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -o ../bin/demo_unassigned_or_unused_file_format -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Built target demo_unassigned_or_unused_file_format make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/find_wild.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/find_wild.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_types.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/graph_hmm_silent.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/graph_hmm_silent.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/gff2gtf.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/gff2gtf.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/gff2gtf.cpp:20:14: required from here 20 | if (!open(inFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/gff2gtf.cpp:20:14: required from here 20 | if (!open(inFile, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../bin/demo_unassigned_or_unused_find_wild cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_find_wild.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o -o ../bin/demo_unassigned_or_unused_find_wild -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Built target demo_unassigned_or_unused_find_wild In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index > >; TSource = Index > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > >; TValue2 = Index > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > >; typename Reference > >::Type = Index > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > > >; typename Parameter_::Type>::Type = Index > >&; typename Haystack::Type = Index > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp:16:16: required from here 16 | while (find(finder_esa, "be")) | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > >& seqan::Index > >::operator=(const seqan::Index > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, IndexQGram > >; TSource = Index >, IndexQGram > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, IndexQGram > >; TValue2 = Index >, IndexQGram > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, IndexQGram > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, IndexQGram > >; typename Reference > >::Type = Index >, IndexQGram > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = String >; TSpec = IndexQGram >; TSpecFinder = const Tag; typename Parameter_ >::Type = Index >, IndexQGram > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder >, IndexQGram > > >; typename Parameter_::Type>::Type = Index >, IndexQGram > >&; typename Haystack::Type = Index >, IndexQGram > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_qgram.h:75:33: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, QGramFindLookup) [with TText = String >; TSpec = IndexQGram >; TSpecFinder = const Tag; TPattern = char [3]; QGramFindLookup = const Tag]' 75 | TIndex &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = String >; TSpec = IndexQGram >; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp:28:16: required from here 28 | while (find(finder_2gram, "be")) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexQGram > >& seqan::Index >, seqan::IndexQGram > >::operator=(const seqan::Index >, seqan::IndexQGram > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index >, seqan::IndexQGram > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::String >; TShapeSpec = seqan::UngappedShape<2>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp [ 89%] Linking CXX executable ../bin/demo_unassigned_or_unused_graph_hmm_silent cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o -o ../bin/demo_unassigned_or_unused_graph_hmm_silent -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Built target demo_unassigned_or_unused_graph_hmm_silent make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -o ../bin/demo_unassigned_or_unused_index_find -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_find make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index > > >; TSource = Index > > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > > >; TValue2 = Index > > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index > > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > > >; typename Reference > >::Type = Index > > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > > >&]' 115 | return value(me.index); | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > > > >; typename Parameter_::Type>::Type = Index > > >&; typename Haystack::Type = Index > > >]' 904 | return container(obj); | ~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:59:46: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 59 | Index &index = haystack(finder); | ~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]; FinderMlr = const Tag]' 60 | indexRequire(index, FibreSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = char [3]]' 275 | _findFirstIndex(finder, needle(pattern), TSpecFinder()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:16: required from here 23 | while (find(myFinder, "be")) | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' 198 | _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' 614 | createSuffixArray(indexSA(index), indexText(index), alg); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:17: required from here 23 | indexRequire(myIndex, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet > >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:41:60: required from here 41 | std::cout << "\t\"" << representative(myMUMiterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:41:60: required from here 41 | std::cout << "\t\"" << representative(myMUMiterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here 22 | Iterator::Type myMUMiterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_gff2gtf cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -o ../bin/demo_unassigned_or_unused_gff2gtf -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_gff2gtf make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_node_predicate.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_node_predicate.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_node_predicate.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_node_predicate.cpp:87:68: required from here 87 | std::cout << "\t\"" << representative(myConstrainedIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_node_predicate.cpp:87:68: required from here 87 | std::cout << "\t\"" << representative(myConstrainedIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_node_predicate cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o -o ../bin/demo_unassigned_or_unused_index_node_predicate -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_node_predicate make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_qgram_counts.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_qgram_counts.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_qgram_counts.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_lcp cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -o ../bin/demo_unassigned_or_unused_index_lcp -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_lcp make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_sufarray.cpp [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_qgram_counts cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -o ../bin/demo_unassigned_or_unused_index_qgram_counts -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 90%] Built target demo_unassigned_or_unused_index_qgram_counts make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find_stringset cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -o ../bin/demo_unassigned_or_unused_index_find_stringset -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_sufarray.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_sufarray.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_find_stringset make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 91%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/iterator.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/iterator.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/iterator.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = String >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs.h:121:33: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index > >; TSize = unsigned int]' 121 | minLength(_minLength) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp:18:74: required from here 18 | Iterator::Type myRepeatIterator(myIndex, 3); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp:33:63: required from here 33 | std::cout << "\t\"" << representative(myRepeatIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' 515 | return begin(cont, Rooted()); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' 1085 | typename DirectionIterator::Type iter = directionIterator(cont, Input()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = std::basic_ostream; THost = const String >; TSpec = InfixSegment]' 789 | write(it, source); | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp:33:63: required from here 33 | std::cout << "\t\"" << representative(myRepeatIterator) << '\"' << std::endl; | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_iterator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o -o ../bin/demo_unassigned_or_unused_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Built target demo_unassigned_or_unused_iterator make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp [ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_sufarray cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o -o ../bin/demo_unassigned_or_unused_index_sufarray -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Built target demo_unassigned_or_unused_index_sufarray make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modreverse.cpp [ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_mums cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_mums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -o ../bin/demo_unassigned_or_unused_index_mums -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Built target demo_unassigned_or_unused_index_mums make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modview.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:32: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modreverse.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modreverse.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modview.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modview.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_supermaxrepeats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o -o ../bin/demo_unassigned_or_unused_index_supermaxrepeats -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modview.cpp:10:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 10 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Built target demo_unassigned_or_unused_index_supermaxrepeats make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_filter_sam cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -o ../bin/demo_unassigned_or_unused_filter_sam -lrt -lz -lbz2 make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_nested.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Built target demo_unassigned_or_unused_filter_sam make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp [ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_modreverse cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_modreverse -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 91%] Built target demo_unassigned_or_unused_modifier_modreverse make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/rooted_iterator.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_modview cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_modview -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_modifier_modview make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_nested.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_nested.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:76:19: required from here 76 | if (!loadReads(fragStore, argv[2])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:76:19: required from here 76 | if (!loadReads(fragStore, argv[2])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:76:19: required from here 76 | if (!loadReads(fragStore, argv[2])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:34: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 98 | class ModifiedIterator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:76:19: required from here 76 | if (!loadReads(fragStore, argv[2])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:740:41: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' 740 | TSize seqCount = countSequences(host(pattern)); | ~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:91:20: required from here 91 | while (find(finder, pattern, EPSILON)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::UngappedShape<11>]' 143 | Index(Index const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 340 | return TRevComp(host); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1261:14: required from 'bool seqan::loadReads(FragmentStore&, TFileName&) [with TSpec = void; TConfig = FragmentStoreConfig; TFileName = char*]' 1261 | if (!open(seqFile, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:76:19: required from here 76 | if (!loadReads(fragStore, argv[2])) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(Holder >&, const TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 840 | set(value(me), value_); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Tag; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_hamming_simple.h:89:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int, typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type*) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::DisableIf::type&, const seqan::Pattern >&> >::Type = void; typename std::remove_reference<_Up>::type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 89 | setHost(*this, std::forward(ndl)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:98:104: required from here 98 | Pattern verifyPattern(fragStore.readSeqStore[position(pattern).i1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' 209 | if ((TVal1)*it1 == (TVal2)*it2) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 572 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 663 | TResult tmp(end(host(me), tag_)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 458 | typename Iterator< ModifiedString const, Tag const >::Type temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 811 | typename Iterator::Type sIt = begin(read, Standard()); | ~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:619:22: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' 619 | TResult tmp(begin(host(me), tag_)); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' 503 | typename Iterator const, Tag const >::Type temp_(begin(host(me), Rooted())); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:812:64: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' 812 | typename Iterator::Type sItEnd = end(read, Standard()); | ~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 936 | _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId])); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = ModifiedAlphabet, ModExpand<'-'> >; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = ModifiedAlphabet, ModExpand<'-'> >]' 149 | return convertImpl(Convert(), source); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:92:59: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:169:17: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 169 | return begin(source(*me.data_container), Rooted()) + me.current.seqPos; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 193 | else return *source(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 275 | return getValue(iter(me)); | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' 357 | return convert(getValue(source_)); | ~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_conversion.h:149:23: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/cigar.h:562:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' 562 | errors = getMDString(md, contigGaps, readGaps); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' 905 | alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId], | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | store.readSeqStore[alignedRead.readId], alignedRead, errors, functor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1076 | setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' 1109 | writeAlignments(bamFile, store, functor); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' 1118 | writeRecords(bamFile, store, functor); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:114:17: required from here 114 | writeRecords(bamFile, fragStore); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/rooted_iterator.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/rooted_iterator.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 92%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_nested cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_nested -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_modifier_nested make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp [ 92%] Linking CXX executable ../bin/demo_unassigned_or_unused_rooted_iterator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -o ../bin/demo_unassigned_or_unused_rooted_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_rooted_iterator make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/seeds.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/seeds.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/seeds.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:66:14: required from here 66 | if (!open(seqFileIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:66:14: required from here 66 | if (!open(seqFileIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:66:14: required from here 66 | if (!open(seqFileIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:66:14: required from here 66 | if (!open(seqFileIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sample_seqs.cpp:66:14: required from here 66 | if (!open(seqFileIn, argv[1])) | ~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = long long int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:31: required from here 214 | printAlignment(ascii, layout, store, contigs[i], l, r, beginLine, endLine); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = long long int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:31: required from here 214 | printAlignment(ascii, layout, store, contigs[i], l, r, beginLine, endLine); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = long long int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:31: required from here 214 | printAlignment(ascii, layout, store, contigs[i], l, r, beginLine, endLine); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = long long int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:31: required from here 214 | printAlignment(ascii, layout, store, contigs[i], l, r, beginLine, endLine); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = long long int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:31: required from here 214 | printAlignment(ascii, layout, store, contigs[i], l, r, beginLine, endLine); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:25: required from here 134 | if (!loadContigs(store, options.fileRefIn.c_str())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm/parse_stellar_gff.h:109:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm/parse_stellar_gff.h:117:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm/parse_stellar_gff.h:162:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm/parse_stellar_gff.h:170:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(TLocalMatchStore&, TForwardIter&, const StellarGff&) [with TLocalMatchStore = LocalMatchStore<>; TForwardIter = Iter, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:25: required from here 134 | if (!loadContigs(store, options.fileRefIn.c_str())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:25: required from here 134 | if (!loadContigs(store, options.fileRefIn.c_str())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:25: required from here 134 | if (!loadContigs(store, options.fileRefIn.c_str())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:16: required from here 142 | readRecords(store, samFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' 1035 | return loadContigs(store, fileNames, loadSeqs); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = const char*]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:25: required from here 134 | if (!loadContigs(store, options.fileRefIn.c_str())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment >, seqan::InfixSegment>; THostValue = seqan::Segment >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment >, seqan::InfixSegment>]' 165 | data_gaps(anchors), | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:16: required from here 142 | readRecords(store, samFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 135 | assignValue(*this, value_); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:175:9: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String >; TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 175 | data_source(source), | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:16: required from here 142 | readRecords(store, samFile); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 92%] Linking CXX executable ../bin/demo_unassigned_or_unused_parse_lm_stellar cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o -o ../bin/demo_unassigned_or_unused_parse_lm_stellar -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_parse_lm_stellar make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp [ 92%] Linking CXX executable ../bin/demo_unassigned_or_unused_seeds cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_seeds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -o ../bin/demo_unassigned_or_unused_seeds -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_seeds make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:4: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:20:27: required from here 20 | SeqFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:20:27: required from here 20 | SeqFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:20:27: required from here 20 | SeqFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:20:27: required from here 20 | SeqFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:20:27: required from here 20 | SeqFileIn file(argv[1]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Linking CXX executable ../bin/demo_unassigned_or_unused_minimapper cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_minimapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -o ../bin/demo_unassigned_or_unused_minimapper -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = unsigned int; TCargo = Pair >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > > > >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = unsigned int; typename Value::Type = Fragment<>]' 571 | findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > > > >; TSequence = String, Alloc<> >; TSetSpec = Owner<>]' 678 | matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:57:20: required from here 57 | matchRefinement(matches, seqs, g); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_minimapper make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here 25 | SeqFileIn seqFileIn(argv[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here 25 | SeqFileIn seqFileIn(argv[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:138: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> > > >; TSpec = BottomUp<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> > > >; TSpec = BottomUp<>]' 2236 | _clear(it); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(Iter >, VSTree > >&) [with TText = StringSet, Alloc<> > >; TIndexSpec = void; TSpec = Postorder]' 1605 | clear(it); // start in root node with range (0,infty) | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 453 | goBegin(*this); | ~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:137: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here 25 | SeqFileIn seqFileIn(argv[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here 25 | SeqFileIn seqFileIn(argv[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 93%] Linking CXX executable ../bin/demo_unassigned_or_unused_sample_seqs cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -o ../bin/demo_unassigned_or_unused_sample_seqs -lrt -lz -lbz2 /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here 25 | SeqFileIn seqFileIn(argv[i]); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Built target demo_unassigned_or_unused_sample_seqs make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/example1.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' 218 | struct Pipe< TInput, Multi > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' 173 | _createSuffixArrayPipelining(sa, s, Skew7()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 414 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 415 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 432 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 443 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 243 | struct Pipe< TInput, Skew7 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' 294 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > > > >]' 416 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' 350 | _skew7ExtendMulti( | ~~~~~~~~~~~~~~~~~^ 351 | textIn, limits, | ~~~~~~~~~~~~~~~ 352 | names_S1, names_S2, names_S4, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/example1.cpp:3: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/example1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 161 | if (r >= 6) push(out6, o6); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 162 | if (r >= 5) push(out5, o5); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 179 | if (r >= 3) push(out3, o3); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 190 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' 633 | else handler2->end(); | ~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 904 | writer->end(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 786 | endWrite(); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 173 | struct Pipe< TInput, Skew3 > | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 312 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' 163 | if (r >= 4) push(out124, o4); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 362 | _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 93%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 123 | push(out0, o0); | ~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 218 | process(_textIn); | ~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' 447 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 622 | if (handler1) handler1->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' 623 | else handler2->push(Val_); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 881 | writer->push(Val_); | ~~~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' 1167 | me.push(Val_); | ~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' 101 | push(out12, o2); | ~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' 269 | _skew3Extend(textIn, names_linear, sortedS0, sortedS12); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 302 | ++in.in5; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 332 | return processBuffer(*chain.first, *this); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' 556 | else return handler2->next(); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' 744 | buffer = handler.next(); | ~~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' 870 | reader->pop(); | ~~~~~~~~~~~^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' 111 | ++in.in2; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 658 | return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' 726 | return indexCreate(index, fibre); // and create table | ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(Index >&) [with TText = StringSet, Alloc<> > >; TSpec = void]' 461 | indexRequire(index, EsaSA()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' 452 | _indexRequireBottomUpIteration(_index); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; TSize = unsigned int]' 122 | seqSet(countSequences(_tree)) | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here 37 | Iterator::Type mumIt(index, 5); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:52:15: required from 'void convertToHardMasked(TStream&, const char*) [with TStream = std::basic_ostream]' 52 | SeqFileIn inFile(filename); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:28: required from here 82 | convertToHardMasked(std::cout, argv[i]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:52:15: required from 'void convertToHardMasked(TStream&, const char*) [with TStream = std::basic_ostream]' 52 | SeqFileIn inFile(filename); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:28: required from here 82 | convertToHardMasked(std::cout, argv[i]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:52:15: required from 'void convertToHardMasked(TStream&, const char*) [with TStream = std::basic_ostream]' 52 | SeqFileIn inFile(filename); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:28: required from here 82 | convertToHardMasked(std::cout, argv[i]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:52:15: required from 'void convertToHardMasked(TStream&, const char*) [with TStream = std::basic_ostream]' 52 | SeqFileIn inFile(filename); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:28: required from here 82 | convertToHardMasked(std::cout, argv[i]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:52:15: required from 'void convertToHardMasked(TStream&, const char*) [with TStream = std::basic_ostream]' 52 | SeqFileIn inFile(filename); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:28: required from here 82 | convertToHardMasked(std::cout, argv[i]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 93%] Linking CXX executable ../bin/demo_unassigned_or_unused_sequence_length cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -o ../bin/demo_unassigned_or_unused_sequence_length -lrt -lz -lbz2 [ 93%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Built target demo_unassigned_or_unused_sequence_length make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp:8: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 93%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/count_characters.cpp [ 93%] Linking CXX executable ../bin/demo_unassigned_or_unused_soft_to_hard_masking cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -o ../bin/demo_unassigned_or_unused_soft_to_hard_masking -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Built target demo_unassigned_or_unused_soft_to_hard_masking make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 -lrt -lz -lbz2 [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_count_characters cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_count_characters -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/DependInfo.cmake "--color=" [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/replace_as.cpp [ 94%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/replace_as.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/replace_as.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp:4: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/example1.cpp [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/DependInfo.cmake "--color=" In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/example1.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/example1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp:6: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp:7: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp:2: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_example1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution1.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp:5: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_reader_demo cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_reader_demo -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution1.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution1.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_reader_demo /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution3.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution1 -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution3.cpp:4: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution3.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o -MF CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o.d -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution2 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution2 -lrt -lz -lbz2 [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution3 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution2 make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color=" [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color=" [ 95%] Building CXX object apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp:2: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_sam2svg cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o -o ../bin/demo_unassigned_or_unused_sam2svg -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = const char*]', inlined from 'int main(int, const char**)' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp:23:33: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main(int, const char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = const char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = const char*]', inlined from 'int main(int, const char**)' at /build/reproducible-path/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp:24:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'int main(int, const char**)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = const char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_sam2svg make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution4 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution4 make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:42: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 95%] Building CXX object apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:58, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar_score.h:28:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 28 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/statistics.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' 157 | else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:1168:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 1168 | reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' 157 | else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches; | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:1168:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 1168 | reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' 21 | if (!open(seqFileIn, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 996 | loadReadsCroppedId(store, options.readFileName); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' 21 | if (!open(seqFileIn, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 996 | loadReadsCroppedId(store, options.readFileName); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' 21 | if (!open(seqFileIn, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 996 | loadReadsCroppedId(store, options.readFileName); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 159 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:159:20: note: remove the '< >' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 333 | AFScore(unsigned k, unsigned m, bool verbose_ = false) : | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_base.h:333:17: note: remove the '< >' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' 21 | if (!open(seqFileIn, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 996 | loadReadsCroppedId(store, options.readFileName); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' 21 | if (!open(seqFileIn, toCString(fileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' 996 | loadReadsCroppedId(store, options.readFileName); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:294:24: required from here 294 | postProcessMain(options, BsNonSimple()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/af_n2.h: In instantiation of 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/alignment_free_comparison.h:101:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' 101 | _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:188:32: required from here 188 | alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/alignment_free/af_n2.h:189:64: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 189 | itStandardisedKmerCounts = begin(standardisedKmerCounts); | ^ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:164:13: required from here 164 | open(seqFile, toCString(inFile)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:164:13: required from here 164 | open(seqFile, toCString(inFile)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:164:13: required from here 164 | open(seqFile, toCString(inFile)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:14:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 14 | struct ConvertCT : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:23:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 23 | struct ConvertGA : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:164:13: required from here 164 | open(seqFile, toCString(inFile)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf/alf.cpp:164:13: required from here 164 | open(seqFile, toCString(inFile)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' 41 | seqan::SeqFileIn seqFileIn(toCString(options.inputFileName)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:146:15: required from here 146 | preProcess(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' 41 | seqan::SeqFileIn seqFileIn(toCString(options.inputFileName)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:146:15: required from here 146 | preProcess(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' 41 | seqan::SeqFileIn seqFileIn(toCString(options.inputFileName)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:146:15: required from here 146 | preProcess(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:42:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' 42 | seqan::SeqFileOut seqFileOut(toCString(options.outputFileName)); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:146:15: required from here 146 | preProcess(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' 41 | seqan::SeqFileIn seqFileIn(toCString(options.inputFileName)); | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:146:15: required from here 146 | preProcess(options); | ~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:6, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:73: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_score.h:42:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 42 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:17:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 17 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:66:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 66 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:81:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 81 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:129:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 129 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:142:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 142 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:165:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 165 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:184:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 184 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar_realignment.h:206:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:873:31: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 873 | seqan::VcfFileOut vcfFileOut(toCString(tempFileNameVcf)); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:899:31: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 899 | seqan::BedFileOut bedFileOut(toCString(tempFileNameBed)); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1618 | TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = int; TSetContigAnchorGaps = seqan::String >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' 1163 | printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 742 | doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.h:1355:36: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]' 1355 | TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:755:36: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 755 | doSnpAndMethCalling(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, false, vcfFileOut, bedFileOut, methOptions, options); //bs | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 792 | loadContigs(fragmentStore1, genomeFileNameList); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = int; TSetContigAnchorGaps = seqan::String >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' 1163 | printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 742 | doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = int; TSetContigAnchorGaps = seqan::String >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' 1163 | printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 742 | doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 792 | loadContigs(fragmentStore1, genomeFileNameList); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = int; TSetContigAnchorGaps = seqan::String >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' 1163 | printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 742 | doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 205 | return TProxy(it); | ^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy >, AnchorGaps > > >, GapsIterator > > > > > >]' 250 | return value(me); | ~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps > > >; TReadGaps = Gaps >, AnchorGaps > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' 1628 | else if (convert(*cit) == convert(*it)) | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' 1777 | _printRead(stream, layout, contigGaps, readGaps, align, line); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = int; TSetContigAnchorGaps = seqan::String >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' 1163 | printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 742 | doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 792 | loadContigs(fragmentStore1, genomeFileNameList); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String, Alloc<> >; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner<> >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps > > >; TReadGaps = Gaps, Alloc<> >, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner<> >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigGapsString = String >, Alloc<> >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:751:49: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' 751 | convertPairWiseToGlobalAlignment(fragmentStoreTmp, setContigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 901 | detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 792 | loadContigs(fragmentStore1, genomeFileNameList); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' 996 | if (!open(seqFile, toCString(fileNameList[f]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' 1043 | return loadContigs(store, fileNames, true); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' 792 | loadContigs(fragmentStore1, genomeFileNameList); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:1265:28: required from here 1265 | int result = detectSNPs(options, methOptions); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_segmentalignment cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -o ../bin/demo_unassigned_or_unused_segmentalignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_segmentalignment make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:27: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:28: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:268:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 268 | struct LessSubstringEnd : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:292:27: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 292 | struct LessRange : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:309:25: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 309 | struct LessLex : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' 248 | if (!open(seqFile, toCString(fileNames[s]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' 498 | if (!loadDatasets(mySet, fileNames, ds)) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:835:68: required from here 835 | case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' 248 | if (!open(seqFile, toCString(fileNames[s]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' 498 | if (!loadDatasets(mySet, fileNames, ds)) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:835:68: required from here 835 | case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' 248 | if (!open(seqFile, toCString(fileNames[s]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' 498 | if (!loadDatasets(mySet, fileNames, ds)) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:835:68: required from here 835 | case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' 248 | if (!open(seqFile, toCString(fileNames[s]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' 498 | if (!loadDatasets(mySet, fileNames, ds)) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:835:68: required from here 835 | case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' 248 | if (!open(seqFile, toCString(fileNames[s]))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' 498 | if (!loadDatasets(mySet, fileNames, ds)) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:835:68: required from here 835 | case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 96%] Linking CXX executable ../../bin/four2three cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../bin/four2three -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target four2three make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_bam_coverage.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_bam_coverage.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_bam_coverage.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_bam_coverage.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_bam_coverage.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Linking CXX executable ../../bin/alf cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../bin/alf -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target alf make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here 290 | if (!open(seqFile, toCString(options.inFilename))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here 290 | if (!open(seqFile, toCString(options.inFilename))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here 290 | if (!open(seqFile, toCString(options.inFilename))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here 290 | if (!open(seqFile, toCString(options.inFilename))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here 290 | if (!open(seqFile, toCString(options.inFilename))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 96%] Linking CXX executable ../../bin/bisar cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../bin/bisar -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target bisar make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp [ 96%] Linking CXX executable ../../bin/fx_bam_coverage cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../bin/fx_bam_coverage -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target fx_bam_coverage make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -MF CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o.d -o CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:28, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp:27: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp:24: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:35: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seeds.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:30: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_types.h:155:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 155 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_types.h:207:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 207 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Linking CXX executable ../../bin/dfi cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../bin/dfi -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target dfi make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/parse_lm.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/create_stellarmatches_from_file.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_parse_options.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp:28: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../bin/fx_fastq_stats cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target fx_fastq_stats make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:14: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp:25: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 196 | seqan::SeqFileIn l(toCString(fileNameL)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:437:25: required from here 437 | _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 196 | seqan::SeqFileIn l(toCString(fileNameL)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:437:25: required from here 437 | _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 196 | seqan::SeqFileIn l(toCString(fileNameL)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:437:25: required from here 437 | _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:330:27: required from 'int _writeSequences(seqan::CharString&, const seqan::StringSet >&, const seqan::StringSet > >&, const seqan::StringSet > >&) [with TSequence = seqan::String, seqan::Alloc<> >; seqan::CharString = seqan::String >]' 330 | seqan::SeqFileOut seqFile(toCString(outPath)); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:439:24: required from here 439 | _writeSequences(options.outPaths[0], seqs, sIds, quals); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 196 | seqan::SeqFileIn l(toCString(fileNameL)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/join_mates.cpp:437:25: required from here 437 | _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:16: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = unsigned int]' 103 | data_host(_toPointer(_host)), | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:17: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:97: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_out.h:1054:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, seqan::StringSet >&, seqan::StringSet&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::Vcf = seqan::Tag]' 1054 | if (!open(vcfOut, fn_vcf.c_str())) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:283:28: required from here 283 | _writeGlobalBreakpoints(globalBreakpoints, databases, databaseIDs, msplazerOptions, Vcf()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 143 | if (!open(leftMates, toCString(fileNameL))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:71:30: required from here 71 | if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 202 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 577 | TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH))); | ~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_out.h:356:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, const MSplazerOptions&, seqan::Gff) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; seqan::Gff = seqan::Tag]' 356 | if (!open(gffOut, fn_gff.c_str())) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:282:28: required from here 282 | _writeGlobalBreakpoints(globalBreakpoints, msplazerOptions, Gff()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 143 | if (!open(leftMates, toCString(fileNameL))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:71:30: required from here 71 | if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_out.h:356:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, const MSplazerOptions&, seqan::Gff) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; seqan::Gff = seqan::Tag]' 356 | if (!open(gffOut, fn_gff.c_str())) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:282:28: required from here 282 | _writeGlobalBreakpoints(globalBreakpoints, msplazerOptions, Gff()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 143 | if (!open(leftMates, toCString(fileNameL))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:71:30: required from here 71 | if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:190: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' 570 | _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' 109 | return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | BandedWatermanEggert()); | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' 121 | return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 607 | while (nextLocalAlignment(localAlign, enumerator)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' 195 | return _toParameter(me.data_host); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' 773 | pos += beginPosition(host(source(row(infixAlign, i)))); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:801:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 801 | integrateAlign(align, localAlign); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]' 1532 | findIntervals(result, g, pm, act_knot, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = unsigned int; TCargo = unsigned int; TValue2 = unsigned int]' 1513 | findIntervals(result, tree.g, tree.pm, query_begin, query_end); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:255:18: required from 'bool _checkRightMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' 255 | findIntervals(confMateMatches, gustafChain.rightMateTree, mateIntervalBegin, mateIntervalEnd); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:294:42: required from 'bool _checkMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' 294 | return _checkRightMateMatches(sMatch, queryMatches, gustafChain, options); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:458:35: required from 'void _initialiseGraphMatePairs(QueryMatches >&, TId&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' 458 | if (!_checkMateMatches(queryMatches.matches[i], queryMatches.matches, chain, options)) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_algorithms.h:840:42: required from 'void _chainQueryMatches(seqan::StringSet > >&, seqan::String&, seqan::String&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TScoreAlloc = seqan::String; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' 840 | _initialiseGraphMatePairs(stellarMatches[i], queryIds[i], chain, msplazerOptions); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:230:23: required from here 230 | _chainQueryMatches(stellarMatches, distanceScores, queryChains, queryIDs, queries, readJoinPositions, msplazerOptions); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 143 | if (!open(leftMates, toCString(fileNameL))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:71:30: required from here 71 | if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' 395 | return host(obj); | ~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 687 | TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern))); | ~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' 143 | if (!open(leftMates, toCString(fileNameL))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:71:30: required from here 71 | if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' 217 | appendValue(alignmentString, ali); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 614 | _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:20: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h: In instantiation of 'void seqan::createReadCountGFF(TFile&, TReadAnnoStore&, FragmentStore&) [with TFile = std::basic_fstream; TReadAnnoStore = String >; TSpec = void; TConfig = FragmentStoreConfig]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:889:23: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 889 | createReadCountGFF(readOutput, readAnnoStore, fragStore); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:75:35: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 75 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:12: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:76:38: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 76 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:100:43: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 100 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:101:46: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 101 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:134:51: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 134 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:135:54: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 135 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:169:43: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 169 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/create_gff.h:170:46: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 170 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' 427 | value(gaps._source) = source; | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 604 | assignSource(row(localAlign, 0), infH); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' 937 | appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' 396 | appendValue(str, infixH); | ~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:697:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' 697 | _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:852:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 852 | if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const Iter >&) [with TFragmentStore = FragmentStore<>; TSpec = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:48:64: required from 'void seqan::adjustParentEntries(FragmentStore&) [with TSpec = void; TConfig = FragmentStoreConfig]' 48 | getAnnotation(it).contigId = getAnnotation(nodeDown(it)).contigId; // If no child exists: nothing happens | ~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:851:21: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 851 | adjustParentEntries(fragStore); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:853:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 853 | Iter > tmp(it); | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:855:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 855 | return tmp; | ^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:22: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h: In instantiation of 'void seqan::getIdsForRead(TAnnoIds&, FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TIntervalTree = IntervalTree; TIntervals = String, Alloc<> >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:754:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' 754 | getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 870 | getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:90:13: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 90 | itR = begin(ids); | ~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h: In instantiation of 'void seqan::buildAnnoCountStore(TAnnoCountStore&, FragmentStore&, TReadAnnoStore&) [with TAnnoCountStore = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:760:21: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' 760 | buildAnnoCountStore(annoCountStore, fragStore, readAnnoStore); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 870 | getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:536:51: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 536 | itAnnoIds = begin(getValue(itRead).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:537:54: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 537 | itAnnoIdsEnd = end(getValue(itRead).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:21: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h: In instantiation of 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:761:29: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' 761 | buildTupleCountStore_Fusion(tupleCountStore, tupleCountStore_Fusion, fragStore, readAnnoStore, tupelSize, exact_nTuple); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 870 | getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:191:92: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 191 | itSecTuple = begin(tempSecTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:192:95: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 192 | itSecTupleEnd = end(tempSecTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:208:57: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 208 | itTuple = begin(tupleSet); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:209:60: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 209 | itTupleEnd = end(tupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:238:76: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 238 | itSecTuple = begin(secTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:239:79: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 239 | itSecTupleEnd = end(secTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:291:57: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 291 | itTuple = begin(tupleSet); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:292:60: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 292 | itTupleEnd = end(tupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:298:68: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 298 | itSecTuple = begin(secTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:299:71: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 299 | itSecTupleEnd = end(secTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h: In instantiation of 'void seqan::buildTupleCountStore(TTupleCountStore&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:624:22: required from 'void seqan::getResults(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TSpec = void; TConfig = FragmentStoreConfig]' 624 | buildTupleCountStore(tupleCountStore, fragStore, readAnnoStore, tupelSize, exact_nTuple); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:872:13: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 872 | getResults(readAnnoStore, annoCountStore, tupleCountStore, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:354:57: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 354 | itTuple = begin(tupleSet); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:355:60: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 355 | itTupleEnd = end(tupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:384:76: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 384 | itSecTuple = begin(secTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:385:79: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 385 | itSecTupleEnd = end(secTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:13: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1348 | valueConstruct(begin(me, Standard()) + me_length, std::forward(temp_copy)); //??? this should be valueMoveConstruct | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:697:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' 697 | _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:852:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 852 | if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' 1354 | valueConstruct(begin(me, Standard()) + me_length, std::forward(_value)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' 1366 | AppendValueToString_ >::appendValue_(me, std::forward(_value)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' 174 | appendValue(me.strings, obj, tag); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:697:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' 697 | _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar_extension.h:852:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 852 | if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' 633 | if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' 705 | verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 | pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 | numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' 197 | stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/msplazer_main.h:146:27: required from here 146 | _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:19: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/base.h: In instantiation of 'void seqan::create_nTuple(TStringSet&, FragmentStore&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TId = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:122:60: required from 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]' 122 | if (exact_nTuple && n <= length(annoIds)) create_nTuple(tupleSet, fragStore, annoIds, getValue(itP), n); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:761:29: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' 761 | buildTupleCountStore_Fusion(tupleCountStore, tupleCountStore_Fusion, fragStore, readAnnoStore, tupelSize, exact_nTuple); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 870 | getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/base.h:69:23: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 69 | itSet = begin(tempTupleSet); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/base.h:70:26: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 70 | itSetEnd = end(tempTupleSet); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/base.h: In instantiation of 'void seqan::create_Tuple(TStringSet&, FragmentStore&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TId = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:126:41: required from 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]' 126 | else if (!exact_nTuple) create_Tuple(tupleSet, fragStore, annoIds, getValue(itP), n); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:761:29: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' 761 | buildTupleCountStore_Fusion(tupleCountStore, tupleCountStore_Fusion, fragStore, readAnnoStore, tupelSize, exact_nTuple); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 870 | getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/base.h:97:20: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 97 | it = begin(tempTupleSet); | ~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/base.h:98:23: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 98 | itEnd = end(tempTupleSet); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:848:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 848 | GffFileIn inGff(toCString(options.nameGFF)); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_intervaltree.h:182:18: required from 'void seqan::findIntervalsForInterval(String&, TIntervalTree&, TInterval&, unsigned int) [with TIntervalTree = IntervalTree; TInterval = Interval; TCargo = unsigned int]' 182 | findIntervals(result1, intervalTree.g, intervalTree.pm, interval.i1 + offsetInterval); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:85:27: required from 'void seqan::getIdsForRead(TAnnoIds&, FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TIntervalTree = IntervalTree; TIntervals = String, Alloc<> >]' 85 | findIntervalsForInterval(value(itR), intervalTree, getValue(itI), offsetInterval); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/fusion.h:754:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' 754 | getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 870 | getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' 257 | _open(*this, fileName, openMode, True()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:848:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 848 | GffFileIn inGff(toCString(options.nameGFF)); | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:90: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; TDifference = long long int]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >]' 679 | return begin(me, Tag()) + pos; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TPos = long long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' 661 | return iter(me, pos, typename DefaultGetIteratorSpec::Type()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String >; TPosition = long long int; TCount = long long int]' 466 | TIter it = iter(gaps, clippedViewPos); | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long long int; TSize = long long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2236 | insertGaps(gaps, insPos - rBegin, blkLen); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps > > >; TContigGapsPW = Gaps, AnchorGaps >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' 2321 | _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2437 | _twoWayMergeAlignments( | ~~~~~~~~~~~~~~~~~~~~~~^ 2438 | contigGapsGlobal, contigGapsPW, readGaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2439 | firstOverlapOld, lastOverlapOld, firstOverlapNew, it, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2440 | store.readSeqStore); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:839:16: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 839 | readRecords(fragStore, inSam); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2393 | TContigGapsPW contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]); | ^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:839:16: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 839 | readRecords(fragStore, inSam); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' 887 | create(me, value_); | ~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet >, Owner > >]' 2394 | TReadGaps readGaps(store.readSeqStore[it->readId], it->gaps); | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' 337 | convertPairWiseToGlobalAlignment(store, contigAnchorGaps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 361 | readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' 373 | readRecords(store, bamFile, FragStoreImportFlags()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:839:16: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' 839 | readRecords(fragStore, inSam); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:18: required from here 199 | ngsOverlapper(options); | ~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 97%] Linking CXX executable ../../bin/casbar cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../bin/casbar -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target casbar make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:143:14: required from here 143 | if (!open(outStream, toCString(options.methFastaOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:143:14: required from here 143 | if (!open(outStream, toCString(options.methFastaOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_methylation.cpp:143:14: required from here 143 | if (!open(outStream, toCString(options.methFastaOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 97%] Linking CXX executable ../../bin/mason_genome cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../bin/mason_genome -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_genome make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:39: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:635:14, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:644:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1003:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1031:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const char [1]; TExpand = seqan::Tag]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1011:31, inlined from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]; TExpand = TagGenerous_]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1056:42, inlined from 'void seqan::assign(String&, const TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:992:11, inlined from 'void seqan::assignValue(StringSet >&, TPos, const TSequence&) [with TString = String >; TSpec = Tag; TPos = unsigned int; TSequence = char [1]]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:194:11, inlined from 'void seqan::_storeRemoveTempAnnoNames(FragmentStore&) [with TConfig = FragmentStoreConfig; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:661:28: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 1 is out of the bounds [0, 1] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../bin/gustaf_mate_joining cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf_mate_joining.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -o ../../bin/gustaf_mate_joining -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target gustaf_mate_joining make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color=" In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here 142 | if (!open(inFragments, toCString(options.inputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here 142 | if (!open(inFragments, toCString(options.inputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here 142 | if (!open(inFragments, toCString(options.inputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:153:14: required from here 153 | if (!open(outReads, toCString(options.outFileNameLeft))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here 142 | if (!open(inFragments, toCString(options.inputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/random:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:43: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:231:19, inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const TagSelector&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TTagList = TagList, TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:233:19, inlined from 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:573:15: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_readOneAlignment(FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, BamIOContext&, TForwardIter&, const TFormat&, FragStoreSAMContext >&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet >, Owner > >; TMatchMateInfos = String, Alloc<> >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:833:18: required from here 833 | if (!open(vcfFileOut, toCString(options.vcfOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:884:22: required from here 884 | if (!open(outSeqStream, toCString(options.fastaOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:833:18: required from here 833 | if (!open(vcfFileOut, toCString(options.vcfOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:884:22: required from here 884 | if (!open(outSeqStream, toCString(options.fastaOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_variator.cpp:884:22: required from here 884 | if (!open(outSeqStream, toCString(options.fastaOutFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 97%] Linking CXX executable ../../bin/mason_methylation cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../bin/mason_methylation -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_methylation make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp [ 97%] Linking CXX executable ../../bin/insegt cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target insegt make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:43: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:51: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:103:22: required from here 103 | if (!open(outStream, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:103:22: required from here 103 | if (!open(outStream, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_materializer.cpp:103:22: required from here 103 | if (!open(outStream, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:51: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:1155:18: required from here 1155 | if (!open(outSeqsLeft, toCString(options.outFileNameLeft))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:1155:18: required from here 1155 | if (!open(outSeqsLeft, toCString(options.outFileNameLeft))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:1155:18: required from here 1155 | if (!open(outSeqsLeft, toCString(options.outFileNameLeft))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 211 | return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:228:39: required from here 228 | editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:46: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 211 | return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:228:39: required from here 228 | editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 744 | TConstSeqHIterator seqHIter = seqHIterBegin; | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 211 | return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:228:39: required from here 228 | editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, InfixSegment>]' 269 | _setLength(gaps, length(value(gaps._source))); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:155:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 155 | _reinitArrayGaps(*this); | ~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:219:57: required from here 219 | seqan::Gaps gapsContig(contigInfix); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 392 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:45: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 211 | return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:228:39: required from here 228 | editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 520 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 650 | if (seqHIterBegin == end(seqH, Rooted()) - 1) | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 211 | return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:228:39: required from here 228 | editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | : data_container(_toPointer(container_)), | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' 631 | TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' 1417 | _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1418 | dpProfile, TNavigationSpec{}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' 287 | return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | TDPProfile()); | ~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' 308 | return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' 176 | TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | TAlignConfig2(lowerDiag, upperDiag), TGapModel()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' 211 | return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:228:39: required from here 228 | editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 97%] Linking CXX executable ../../bin/mason_frag_sequencing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_frag_sequencing make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../bin/gustaf cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Built target gustaf make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Building CXX object apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:149:22: required from here 149 | if (!open(seqFileOut, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:152:22: required from here 152 | if (!open(gffFileIn, toCString(options.inputGffFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:149:22: required from here 149 | if (!open(seqFileOut, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:152:22: required from here 152 | if (!open(gffFileIn, toCString(options.inputGffFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/mason_splicing.cpp:149:22: required from here 149 | if (!open(seqFileOut, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../bin/mason_variator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../bin/mason_variator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_variator make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:28, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:25: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:29: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:643:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 643 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:672:49: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 672 | struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:728:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 728 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:760:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 760 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:38: /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../bin/mason_materializer cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_materializer make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:414:23: required from here 414 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:414:23: required from here 414 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:414:23: required from here 414 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1359:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1359 | return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1257:40: note: initializing argument 2 of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const RazerSOptions&, MicroRNA) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TSpec = RazerSSpec<>]' 1257 | Segment inf, // potential match genome region | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1471:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:414:23: required from here 414 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:414:23: required from here 414 | success = open(options.readFile, toCString(readFileNames[0])); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:222: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1697 | while (find(swiftFinder, swiftPattern, 0.2)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2268 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:87: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1697 | while (find(swiftFinder, swiftPattern, 0.2)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2271 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1471:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 118 | _host(_toPointer(host)), | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1472:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1472 | TReadRev readRev(readSet[rseqNo]); | ^~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1697 | while (find(swiftFinder, swiftPattern, 0.2)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2279:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2279 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' 1929 | _patternInit(pattern, errorRate, minLength); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' 1913 | return find(finder, pattern, errorRate, 0); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1697 | while (find(swiftFinder, swiftPattern, 0.2)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2282:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2282 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 385 | return _beginDefault(me, tag_); | ~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1440:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1440 | TMyersFinder myersFinder(inf); | ^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 72 | class ModifiedIterator | ^~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1473 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1666 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1666 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2268 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 645 | assign(_dataValue(me), value_); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' 863 | create(me); | ~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' 339 | return value(me.data_host); | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1666 | TReadSet &readSet = host(host(swiftPattern)); | ~~~~^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2271 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find.h:55: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' 1636 | return find(finder, pattern, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' 1654 | return find(finder, pattern, pattern, minScore); //static cast | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1455:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1455 | while (find(myersFinder, myersPattern, minScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' 512 | return _endDefault(me, tag_); | ~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' 469 | TIterator temp_(end(host(me), Rooted())); | ~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' 301 | : data_iterator(begin(haystack, Rooted())) | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1473 | TMyersFinderRev myersFinderRev(infRev); | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' 599 | return container(hostIterator(me)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' 1603 | TSize haystack_length = length(container(finder)); | ~~~~~~~~~^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' 1636 | return find(finder, pattern, state); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' 1654 | return find(finder, pattern, pattern, minScore); //static cast | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1478:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' 1478 | while (find(myersFinderRev, myersPatternRev, maxScore)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' 1717 | matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec())) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2043 | mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2276 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' 305 | TConstructor::construct(it, std::forward(param_)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' 548 | valueConstruct(ret, data); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' 650 | me.data_value = _holderAllocateObject(me, value_); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' 594 | create(me, _dataValue(me)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' 254 | setValue(_dataHost(me), std::forward(ndl)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1971:11: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 1971 | setHost(forwardPatterns[i], indexText(swiftIndex)[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' 2206 | return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' 2265 | return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' 165 | int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:551:34: required from here 551 | int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 97%] Linking CXX executable ../../bin/mason_tests cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io/roi_io_context.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_tests [ 97%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/param_tabs.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp:432:14: required from here 432 | if (!open(roiFileIn, toCString(options.inputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp:432:14: required from here 432 | if (!open(roiFileIn, toCString(options.inputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:40: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:37: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io/roi_io_context.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../bin/mason_simulator cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:318:14: required from here 318 | if (!open(roiFileOut, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 97%] Built target mason_simulator [ 97%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.cpp /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:318:14: required from here 318 | if (!open(roiFileOut, toCString(options.outputFileName))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 98%] Linking CXX executable ../../bin/mason_splicing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../bin/mason_splicing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.cpp:35: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.h:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 98%] Built target mason_splicing make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 98%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io/roi_io_context.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:54: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_builder.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe.h:78: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:76: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:91: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:102: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:107: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:110: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:111: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:114: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:121: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:125: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:131: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:46: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:41: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index.h:188: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io/roi_io_context.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:876:14: required from here 876 | if (!open(roiFileIn, toCString(options.inputRoiFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:876:14: required from here 876 | if (!open(roiFileIn, toCString(options.inputRoiFile))) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [100%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.cpp [100%] Linking CXX executable ../../bin/roi_plot_thumbnails cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target roi_plot_thumbnails [100%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.h:51, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.h:48: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io/roi_io_context.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.h:52: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:38: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io/roi_io_context.h:40, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/roi_io.h:54, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:41: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:58: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short unsigned int; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short unsigned int; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short unsigned int; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = char*]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = char*]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, char*>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:151:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = char*]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = short int; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = short int; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = short int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = unsigned char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = signed char; TSource = String >]', inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'bool seqan::AppendTagsSamToBamOneTagHelper_::operator()(Type) [with Type = signed char; TTarget = seqan::String >; TBuffer = seqan::String >&]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = signed char]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned char; TSubList = TagList]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = char; TSubList = TagList >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short unsigned int; TSubList = TagList > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = short int; TSubList = TagList > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = float; TSubList = TagList > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = unsigned int; TSubList = TagList > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'bool seqan::tagApply(TFunctor&, TagList) [with TFunctor = AppendTagsSamToBamOneTagHelper_ >, String >&>; TTag = int; TSubList = TagList > > > > > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_sam_conversion.h:166:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::_appendTagsSamToBamOneTag(TTarget&, TForwardIter&, CharString&) [with TTarget = String >; TForwardIter = Iter >, AdaptorIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = signed char; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:320:50: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/read_sam.h:363:43: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(BamAlignmentRecord&, BamIOContext&, TForwardIter&, const Sam&) [with TForwardIter = Iter >, StreamIterator > >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:119: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:113:43, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:135:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:154:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:173:25, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'void IntersectWithBedConfig::readRecord(seqan::BedRecord >&)' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:168:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void IntersectWithBedConfig::readRecord(seqan::BedRecord >&)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:119:41, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:135:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:154:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:173:25, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'void IntersectWithBedConfig::readRecord(seqan::BedRecord >&)' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:168:30: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void IntersectWithBedConfig::readRecord(seqan::BedRecord >&)': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:379:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/gff_io/gff_io_base.h:386:42: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -MF CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o.d -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.cpp:37: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [100%] Linking CXX executable ../../bin/bam2roi cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../bin/bam2roi -lrt -lz -lbz2 In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target bam2roi In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream; TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/paramChooser.h:992:51, inlined from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/paramChooser.h:1285:26: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In function 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:113:43, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:135:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:154:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:173:25, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'void IntersectWithBedConfig::readRecord(seqan::BedRecord >&)' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:168:30, inlined from 'void IntersectDriver::run() [with TConfig = IntersectWithBedConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:356:34, inlined from 'void RoiIntersectApp::doStreaming()' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:833:23: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void RoiIntersectApp::doStreaming()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = String >]', inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:119:41, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:135:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:154:25, inlined from 'void seqan::_readBedRecordNoData(BedRecord >&, TForwardIter&, CharString&) [with TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:173:25, inlined from 'void seqan::readRecord(BedRecord&, CharString&, TForwardIter&, const Bed&) [with TSpec = Tag; TForwardIter = Iter >, StreamIterator > >]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/read_bed.h:273:25, inlined from 'void seqan::readRecord(BedRecord&, FormattedFile, Tag, TSpec>&) [with TRecordSpec = Tag; TSpec = void]' at /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bed_io/bed_file.h:111:15, inlined from 'void IntersectWithBedConfig::readRecord(seqan::BedRecord >&)' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:168:30, inlined from 'void IntersectDriver::run() [with TConfig = IntersectWithBedConfig]' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:356:34, inlined from 'void RoiIntersectApp::doStreaming()' at /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp:833:23: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h: In member function 'void RoiIntersectApp::doStreaming()': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [100%] Linking CXX static library libpair_align_lib.a cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/cmake -P CMakeFiles/pair_align_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libpair_align_lib.a CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o [100%] Linking CXX executable ../../bin/roi_feature_projection cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target roi_feature_projection /usr/bin/ranlib libpair_align_lib.a [100%] Linking CXX executable ../../bin/micro_razers cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../bin/micro_razers -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target micro_razers make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/reproducible-path/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:74, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:150, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:79: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:59: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:48, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:48: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align.h:88: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:52, from /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:44: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:60, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io/fai_index.h:41, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:73: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store.h:62: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 120 | return guessFormatFromFilename(fname, static_cast::Base &>(format)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95: /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 151 | _host(_toPointer(host)), tmp_value() | ~~~~~~~~~~^~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' 114 | if (guessFormatFromFilename(fname, TFormat())) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' 722 | if (!guessFormatFromFilename(basename, file.format)) // read/write from/to a file (with extension) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' 739 | return _open(file, fileName, openMode, False()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:14: required from here 699 | if (!open(bamFile, bamFilename)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /build/reproducible-path/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [100%] Linking CXX executable ../../bin/pair_align cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../bin/pair_align lib/libpair_align_lib.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target pair_align make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' #cd obj-i686-linux-gnu; make dox # This does nothing and no *.html files will be created at all # This ends up in: # Could not import extension sphinxcontrib.bibtex (exception: No module named sphinxcontrib.bibtex) # Seems there is no sphinx module bibtex - thus deactivating creation of html manual # cd manual && make html make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_auto_build -Nseqan-apps cd obj-i686-linux-gnu && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan2-2.4.0+dfsg -B/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pair_align_global_1000 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build Consolidate compiler generated dependencies of target pair_align_global_1111 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target pair_align_lcs make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build [ 0%] Built target pair_align_global_1111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend [ 0%] Built target pair_align_global_1000 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". [ 0%] Built target pair_align_lcs make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake "--color=" Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake "--color=" Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target pair_align_local make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build Dependencies file "apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/compiler_depend.internal". Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pair_align_global_0000 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target pair_align_global_0001 Consolidate compiler generated dependencies of target pair_align_global_0010 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build [ 0%] Built target pair_align_local make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake "--color=" [ 0%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target mason_sim make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake "--color=" Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 1%] Built target pair_align_global_0010 [ 1%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend [ 2%] Built target mason_sim make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend Consolidate compiler generated dependencies of target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/compiler_depend.internal". make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake "--color=" [ 2%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target pair_align_global_0100 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build'. Consolidate compiler generated dependencies of target pair_align_global_0101 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/compiler_depend.internal". make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build [ 2%] Built target pair_align_global_0100 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend Consolidate compiler generated dependencies of target pair_align_global_0110 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend Consolidate compiler generated dependencies of target pair_align_global_0111 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/compiler_depend.internal". [ 2%] Built target pair_align_global_0110 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/compiler_depend.internal". [ 2%] Built target pair_align_global_0111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend Consolidate compiler generated dependencies of target pair_align_global_1001 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake "--color=" [ 2%] Built target pair_align_global_1001 Consolidate compiler generated dependencies of target pair_align_global_1010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake "--color=" [ 2%] Built target pair_align_global_1010 make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/compiler_depend.internal". Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pair_align_global_1011 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target pair_align_global_1100 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_1011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color=" make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend Consolidate compiler generated dependencies of target pair_align_global_1101 Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/compiler_depend.internal". make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 2%] Built target pair_align_global_1100 make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend [ 2%] Built target pair_align_global_1101 make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend Consolidate compiler generated dependencies of target pair_align_global_1110 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build Consolidate compiler generated dependencies of target param_chooser make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color=" [ 3%] Built target pair_align_global_1110 [ 3%] Built target param_chooser make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend Consolidate compiler generated dependencies of target test_funcs_param_chooser make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build Dependencies file "apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/compiler_depend.internal". Dependencies file "apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color=" [ 3%] Built target test_funcs_param_chooser make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend Dependencies file "apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/compiler_depend.internal". Dependencies file "apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target rabema_build_gold_standard make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build Consolidate compiler generated dependencies of target rabema_prepare_sam make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 3%] Built target rabema_build_gold_standard make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target rabema_evaluate make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build [ 3%] Built target rabema_prepare_sam make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target rabema_do_search make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color=" [ 3%] Built target rabema_evaluate Dependencies file "apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers/CMakeFiles/razers.dir/compiler_depend.internal". make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/compiler_depend.internal". Dependencies file "apps/razers/CMakeFiles/razers.dir/razers.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers/CMakeFiles/razers.dir/compiler_depend.internal". [ 3%] Built target rabema_do_search make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color=" Dependencies file "apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/compiler_depend.internal". Dependencies file "apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target razers make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rep_sep /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color=" Dependencies file "apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target razers3 [ 4%] Built target razers make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build Consolidate compiler generated dependencies of target razers3_simulate_reads Dependencies file "apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target razers3_quality2prob [ 4%] Built target razers3 make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build [ 4%] Built target razers3_simulate_reads make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target rep_sep make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target razers3_quality2prob make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color=" [ 4%] Built target rep_sep make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend Dependencies file "apps/sak/CMakeFiles/sak.dir/sak.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak/CMakeFiles/sak.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color=" Dependencies file "apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/compiler_depend.internal". Dependencies file "apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target sak make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target sam2matrix make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build Dependencies file "apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target samcat [ 4%] Built target sak make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 4%] Built target samcat make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend [ 4%] Built target sam2matrix make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend Consolidate compiler generated dependencies of target s4_search make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build Consolidate compiler generated dependencies of target s4_join make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color=" [ 4%] Built target s4_search make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend [ 4%] Built target s4_join make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend Dependencies file "apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/compiler_depend.internal". Dependencies file "apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/compiler_depend.internal". Dependencies file "apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/compiler_depend.internal". Dependencies file "apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target sgip Dependencies file "apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/compiler_depend.internal". Dependencies file "apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target seqan_tcoffee make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build [ 5%] Built target sgip make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target seqcons2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build [ 5%] Built target seqan_tcoffee make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/seqcons2/CMakeFiles/seqcons2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target snp_store make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build Consolidate compiler generated dependencies of target stellar make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/stellar/CMakeFiles/stellar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 5%] Built target seqcons2 make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend [ 5%] Built target stellar make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color=" [ 5%] Built target snp_store make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake "--color=" Dependencies file "apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake "--color=" Dependencies file "tests/align/CMakeFiles/test_align.dir/test_align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target tree_recon Consolidate compiler generated dependencies of target test_align make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build Dependencies file "tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target tree_recon make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend [ 6%] Built target test_align Dependencies file "tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/compiler_depend.internal". make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend Consolidate compiler generated dependencies of target test_align_simd_global_equal_length make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build Consolidate compiler generated dependencies of target test_align_simd_global_variable_length make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target test_align_simd_global_equal_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend Consolidate compiler generated dependencies of target test_align_simd_local_equal_length [ 6%] Built target test_align_simd_global_variable_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 6%] Built target test_align_simd_local_equal_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_extend /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/DependInfo.cmake "--color=" Dependencies file "tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake "--color=" Dependencies file "tests/align_extend/CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake "--color=" Dependencies file "tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_align_simd_local_variable_length make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_align_extend Dependencies file "tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/build [ 7%] Built target test_align_simd_local_variable_length Consolidate compiler generated dependencies of target test_align_parallel_data_structures make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/depend Dependencies file "tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align_extend/CMakeFiles/test_align_extend.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 7%] Built target test_align_extend Consolidate compiler generated dependencies of target test_align_parallel_algorithm [ 8%] Built target test_align_parallel_data_structures make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build Consolidate compiler generated dependencies of target test_align_parallel_interface make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build'. make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_profile /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/DependInfo.cmake "--color=" [ 8%] Built target test_align_parallel_interface [ 8%] Built target test_align_parallel_algorithm make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/depend make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/alignment_free /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/align_split /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake "--color=" Dependencies file "tests/alignment_free/CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/compiler_depend.internal". Dependencies file "tests/align_profile/CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/DependInfo.cmake "--color=" Dependencies file "tests/align_split/CMakeFiles/test_align_split.dir/test_align_split.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_alignment_free make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/build Consolidate compiler generated dependencies of target test_align_profile Dependencies file "tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/compiler_depend.internal". Dependencies file "tests/arg_parse/CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/build Consolidate compiler generated dependencies of target test_align_split make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/alignment_free/CMakeFiles/test_alignment_free.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align_profile/CMakeFiles/test_align_profile.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/align_split/CMakeFiles/test_align_split.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_alignment_free Consolidate compiler generated dependencies of target test_arg_parse_version_check make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build [ 8%] Built target test_align_profile make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend Consolidate compiler generated dependencies of target test_arg_parse make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_align_split make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_arg_parse_version_check make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend [ 8%] Built target test_arg_parse make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bam_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake "--color=" Dependencies file "tests/bam_io/CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake "--color=" Dependencies file "tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake "--color=" Dependencies file "tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/compiler_depend.internal". Dependencies file "tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_bam_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/build Dependencies file "tests/basic/CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_basic_metaprogramming make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build Consolidate compiler generated dependencies of target test_basic_fundamental make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_basic_exception make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_basic_concept make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/bam_io/CMakeFiles/test_bam_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_fundamental.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_exception.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_concept.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 8%] Built target test_basic_metaprogramming make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend [ 8%] Built target test_bam_io make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend [ 9%] Built target test_basic_fundamental make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend [ 9%] Built target test_basic_exception [ 9%] Built target test_basic_concept make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake "--color=" make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake "--color=" Dependencies file "tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/compiler_depend.internal". Dependencies file "tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_basic_alphabet Dependencies file "tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_basic_aggregate make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_alphabet.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_aggregate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_basic_allocator Dependencies file "tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build Consolidate compiler generated dependencies of target test_basic_math make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_allocator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_math.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/basic/CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_basic_parallelism [ 10%] Built target test_basic_aggregate [ 10%] Built target test_basic_allocator make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 10%] Built target test_basic_alphabet make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/build [ 10%] Built target test_basic_math make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_parallelism.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake "--color=" [ 10%] Built target test_basic_parallelism make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake "--color=" Dependencies file "tests/basic/CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_basic_container make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/bed_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake "--color=" make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/build Dependencies file "tests/basic/CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/compiler_depend.internal". Dependencies file "tests/basic/CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_basic_iterator Dependencies file "tests/basic/CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_container.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build Consolidate compiler generated dependencies of target test_basic_smart_pointer make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_iterator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build Consolidate compiler generated dependencies of target test_basic_proxy make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/build Dependencies file "tests/bed_io/CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/compiler_depend.internal". [ 10%] Built target test_basic_iterator make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_proxy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend Consolidate compiler generated dependencies of target test_bed_io [ 10%] Built target test_basic_container make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_basic_proxy make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build [ 11%] Built target test_basic_smart_pointer make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/depend make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/blast /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake "--color=" make[3]: Nothing to be done for 'tests/bed_io/CMakeFiles/test_bed_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake "--color=" [ 11%] Built target test_bed_io make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/consensus_v2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/DependInfo.cmake "--color=" Dependencies file "tests/blast/CMakeFiles/test_blast.dir/test_blast.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/compiler_depend.internal". Dependencies file "tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/find /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_blast make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/gff_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake "--color=" Dependencies file "tests/find/CMakeFiles/test_find.dir/test_find.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find/CMakeFiles/test_find.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_consensus Dependencies file "tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/blast/CMakeFiles/test_blast.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build Dependencies file "tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_find make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/consensus/CMakeFiles/test_consensus.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_blast make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend Consolidate compiler generated dependencies of target test_consensus_v2 Consolidate compiler generated dependencies of target test_gff_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/find/CMakeFiles/test_find.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_consensus make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_algorithms /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake "--color=" make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 11%] Built target test_find make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/depend make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/gff_io/CMakeFiles/test_gff_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/compiler_depend.internal". [ 12%] Built target test_gff_io make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake "--color=" [ 12%] Built target test_consensus_v2 make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/depend Consolidate compiler generated dependencies of target test_graph_algorithms make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_msa /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake "--color=" Dependencies file "tests/graph_align/CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/compiler_depend.internal". [ 12%] Built target test_graph_algorithms Dependencies file "tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/compiler_depend.internal". make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/DependInfo.cmake "--color=" Dependencies file "tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_graph_align make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_align/CMakeFiles/test_graph_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_graph_msa Dependencies file "tests/graph_types/CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_msa/CMakeFiles/test_graph_msa.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_graph_types_property_map make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build [ 12%] Built target test_graph_align [ 12%] Built target test_graph_msa Dependencies file "tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/compiler_depend.internal". make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/depend make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/depend Consolidate compiler generated dependencies of target test_graph_types_derived make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_graph_types_iterators make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_utils.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_types.dir/DependInfo.cmake "--color=" [ 13%] Built target test_graph_types_property_map make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend [ 13%] Built target test_graph_types_derived [ 13%] Built target test_graph_types_iterators make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend Dependencies file "tests/graph_types/CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_types.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake "--color=" Dependencies file "tests/graph_types/CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_utils.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_graph_types_types make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_types.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake "--color=" [ 13%] Built target test_graph_types_types make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend Consolidate compiler generated dependencies of target test_graph_types_utils make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake "--color=" [ 13%] Built target test_graph_types_utils make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/depend Consolidate compiler generated dependencies of target test_index_creation Dependencies file "tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build Dependencies file "tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_creation.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_index_creation make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend Consolidate compiler generated dependencies of target test_index_crosscompare_char_dfi make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build Consolidate compiler generated dependencies of target test_index_crosscompare_char make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/DependInfo.cmake "--color=" Dependencies file "tests/index/CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 13%] Built target test_index_crosscompare_char_dfi make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend [ 15%] Built target test_index_crosscompare_char make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend Consolidate compiler generated dependencies of target test_index_crosscompare_dna make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build Dependencies file "tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake "--color=" [ 15%] Built target test_index_crosscompare_dna make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend Consolidate compiler generated dependencies of target test_index_crosscompare_dna_dfi make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build Dependencies file "tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Built target test_index_crosscompare_dna_dfi make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake "--color=" Dependencies file "tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_index_qgram make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build Dependencies file "tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_qgram.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/compiler_depend.internal". [ 15%] Built target test_index_qgram make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/depend Consolidate compiler generated dependencies of target test_index_sa_bwtwalk make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 15%] Built target test_index_sa_bwtwalk make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/depend Consolidate compiler generated dependencies of target test_index_drawing make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_drawing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake "--color=" [ 15%] Built target test_index_drawing make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend Consolidate compiler generated dependencies of target test_index_shapes make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_shapes.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm_sparse_string.dir/DependInfo.cmake "--color=" [ 16%] Built target test_index_shapes make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend Dependencies file "tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/compiler_depend.internal". Dependencies file "tests/index/CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm_sparse_string.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_index_fm_rank_dictionary make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build Dependencies file "tests/index/CMakeFiles/test_index_base.dir/test_index_base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_index_fm_sparse_string make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/index/CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/compiler_depend.internal". make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/compiler_depend.internal". [ 16%] Built target test_index_fm_rank_dictionary make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend Consolidate compiler generated dependencies of target test_index_base Consolidate compiler generated dependencies of target test_index_fm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 16%] Built target test_index_fm_sparse_string make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_fm make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/depend Consolidate compiler generated dependencies of target test_index_bifm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/build [ 17%] Built target test_index_base make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_bifm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_bifm make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake "--color=" Dependencies file "tests/index/CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/compiler_depend.internal". Dependencies file "tests/index/CMakeFiles/test_index_view.dir/test_index_view.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_index_view make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_view.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/index/CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_index_vstree make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake "--color=" [ 17%] Built target test_index_view make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build Dependencies file "tests/index/CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_vstree.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_index_vstree make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/depend Dependencies file "tests/index/CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_find_backtracking Consolidate compiler generated dependencies of target test_index_finder make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_finder.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find_backtracking.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_find_backtracking make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_find2_index_approx make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build [ 17%] Built target test_index_finder make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find2_index_approx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_find2_index_approx make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/depend Dependencies file "tests/index/CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/compiler_depend.internal". Dependencies file "tests/index/CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_set /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_index_repeats make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_repeats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_index_swift [ 17%] Built target test_index_repeats make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake "--color=" Dependencies file "tests/journaled_set/CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_swift.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/compiler_depend.internal". [ 17%] Built target test_index_swift make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/depend Consolidate compiler generated dependencies of target test_journaled_set Dependencies file "tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_set/CMakeFiles/test_journaled_set.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 17%] Built target test_journaled_set Consolidate compiler generated dependencies of target test_basic_observable make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_journaled_string_tree make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/DependInfo.cmake "--color=" [ 17%] Built target test_basic_observable make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake "--color=" make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/depend Dependencies file "tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/compiler_depend.internal". [ 17%] Built target test_journaled_string_tree make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend Dependencies file "tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/compiler_depend.internal". Dependencies file "tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_delta_map make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_journaled_string_tree_find make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/map /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake "--color=" [ 18%] Built target test_delta_map make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_journaled_string_tree_traverser make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/misc /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake "--color=" make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build [ 19%] Built target test_journaled_string_tree_find Dependencies file "tests/map/CMakeFiles/test_map.dir/test_map.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map/CMakeFiles/test_map.dir/compiler_depend.internal". make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/compiler_depend.internal". [ 19%] Built target test_journaled_string_tree_traverser make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_map make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/map/CMakeFiles/test_map.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_misc make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build [ 19%] Built target test_map make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/misc/CMakeFiles/test_misc.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_modifier [ 19%] Built target test_misc make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/compiler_depend.internal". make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/multiple_translation_units /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/modifier/CMakeFiles/test_modifier.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 19%] Built target test_modifier make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake "--color=" make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/depend Dependencies file "tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_modifier_cyclic_shape make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/compiler_depend.internal". Dependencies file "tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/compiler_depend.internal". [ 19%] Built target test_modifier_cyclic_shape make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/parse_lm /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/pipe /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe/CMakeFiles/test_pipe.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_parallel make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/parallel/CMakeFiles/test_parallel.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/pipe/CMakeFiles/test_pipe.dir/test_pipe.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe/CMakeFiles/test_pipe.dir/compiler_depend.internal". Dependencies file "tests/parse_lm/CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_multiple_translation_units make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build [ 19%] Built target test_parallel make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/platform /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform/CMakeFiles/test_platform.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_pipe [ 20%] Built target test_multiple_translation_units Consolidate compiler generated dependencies of target test_parse_lm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/parse_lm/CMakeFiles/test_parse_lm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/platform/CMakeFiles/test_platform.dir/test_platform.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform/CMakeFiles/test_platform.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/random /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/pipe/CMakeFiles/test_pipe.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Built target test_pipe make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend Consolidate compiler generated dependencies of target test_platform make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/build Dependencies file "tests/random/CMakeFiles/test_random.dir/test_random.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random/CMakeFiles/test_random.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/platform/CMakeFiles/test_platform.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Built target test_parse_lm make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/realign /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/DependInfo.cmake "--color=" [ 20%] Built target test_platform Consolidate compiler generated dependencies of target test_random make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/reduced_aminoacid /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/DependInfo.cmake "--color=" Dependencies file "tests/realign/CMakeFiles/test_realign.dir/test_realign.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/random/CMakeFiles/test_random.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_realign [ 20%] Built target test_random make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/rna_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/roi_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_reduced_aminoacid make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build Dependencies file "tests/rna_io/CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/realign/CMakeFiles/test_realign.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 20%] Built target test_reduced_aminoacid make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/depend Dependencies file "tests/roi_io/CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/score /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score/CMakeFiles/test_score.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_rna_io [ 21%] Built target test_realign make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build Dependencies file "tests/score/CMakeFiles/test_score.dir/test_score.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score/CMakeFiles/test_score.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/rna_io/CMakeFiles/test_rna_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_roi_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build [ 21%] Built target test_rna_io make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/roi_io/CMakeFiles/test_roi_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_score make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_extension.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/score/CMakeFiles/test_score.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 21%] Built target test_roi_io make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend Dependencies file "tests/seeds/CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_extension.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/DependInfo.cmake "--color=" [ 21%] Built target test_score Dependencies file "tests/seeds/CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/compiler_depend.internal". make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend Dependencies file "tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_seeds_extension make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_seeds_combination make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_extension.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_combination.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_seeds_global_chaining make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build [ 21%] Built target test_seeds_extension Dependencies file "tests/seeds/CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend [ 21%] Built target test_seeds_combination make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake "--color=" [ 21%] Built target test_seeds_global_chaining make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend Dependencies file "tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_seeds_seed_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_seeds_seed_chained Dependencies file "tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/compiler_depend.internal". [ 21%] Built target test_seeds_seed_base make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend Dependencies file "tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/compiler_depend.internal". [ 21%] Built target test_seeds_seed_chained make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend Consolidate compiler generated dependencies of target test_seeds_seed_set_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_seeds_seed_set_unordered make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake "--color=" [ 21%] Built target test_seeds_seed_set_base make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend Consolidate compiler generated dependencies of target test_seeds_seed_diagonal make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake "--color=" [ 21%] Built target test_seeds_seed_set_unordered make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/seq_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake "--color=" make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/depend Dependencies file "tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/compiler_depend.internal". [ 22%] Built target test_seeds_seed_diagonal make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend Dependencies file "tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/compiler_depend.internal". Dependencies file "tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_seeds_align_banded_chain_impl make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_seq_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build'. make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_seeds_banded_chain_alignment_interface make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_sequence.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seq_io/CMakeFiles/test_seq_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 22%] Built target test_seeds_align_banded_chain_impl make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend [ 22%] Built target test_seq_io [ 23%] Built target test_seeds_banded_chain_alignment_interface make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend Dependencies file "tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/compiler_depend.internal". Dependencies file "tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_sequence.dir/compiler_depend.internal". make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/depend Consolidate compiler generated dependencies of target test_sequence_v2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build Consolidate compiler generated dependencies of target test_sequence make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_sequence.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_sequence_v2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake "--color=" [ 23%] Built target test_sequence make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/sequence_journaled /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/DependInfo.cmake "--color=" [ 24%] Built target test_sequence_v2 make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd/CMakeFiles/test_simd_vector.dir/DependInfo.cmake "--color=" Dependencies file "tests/sequence/CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/compiler_depend.internal". Dependencies file "tests/simd/CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd/CMakeFiles/test_simd_vector.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_stringset_v2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build Dependencies file "tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_stringset_v2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/simple_intervals_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/DependInfo.cmake "--color=" [ 25%] Built target test_stringset_v2 make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/depend Consolidate compiler generated dependencies of target test_simd_vector Dependencies file "tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/statistics /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics/CMakeFiles/test_statistics.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_sequence_journaled make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build [ 25%] Built target test_simd_vector make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend Consolidate compiler generated dependencies of target test_simple_intervals_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build Dependencies file "tests/statistics/CMakeFiles/test_statistics.dir/test_statistics.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics/CMakeFiles/test_statistics.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_sequence_journaled make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/depend [ 25%] Built target test_simple_intervals_io make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/depend Consolidate compiler generated dependencies of target test_statistics make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/stream /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/statistics/CMakeFiles/test_statistics.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "tests/store/CMakeFiles/test_store.dir/test_store.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store/CMakeFiles/test_store.dir/compiler_depend.internal". [ 25%] Built target test_statistics make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/depend Dependencies file "tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/swift_local /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local/CMakeFiles/test_find_swift.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/tabix_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io/CMakeFiles/test_tabix_io.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_store make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/build Consolidate compiler generated dependencies of target test_stream make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build Dependencies file "tests/swift_local/CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local/CMakeFiles/test_find_swift.dir/compiler_depend.internal". Dependencies file "tests/tabix_io/CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io/CMakeFiles/test_tabix_io.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/store/CMakeFiles/test_store.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/stream/CMakeFiles/test_stream.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target test_store make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend [ 25%] Built target test_stream make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/translation /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation/CMakeFiles/test_translation.dir/DependInfo.cmake "--color=" Dependencies file "tests/translation/CMakeFiles/test_translation.dir/test_translation.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation/CMakeFiles/test_translation.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_find_swift make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target test_tabix_io make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/build Consolidate compiler generated dependencies of target test_translation make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/swift_local/CMakeFiles/test_find_swift.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/translation/CMakeFiles/test_translation.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/tabix_io/CMakeFiles/test_tabix_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/ucsc_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake "--color=" [ 25%] Built target test_translation make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend [ 25%] Built target test_tabix_io make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/tests/vcf_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/DependInfo.cmake "--color=" [ 25%] Built target test_find_swift make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend Dependencies file "tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/compiler_depend.internal". Dependencies file "tests/vcf_io/CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target test_ucsc_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build Consolidate compiler generated dependencies of target test_vcf_io make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'tests/vcf_io/CMakeFiles/test_vcf_io.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake "--color=" [ 25%] Built target test_ucsc_io make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend [ 25%] Built target test_vcf_io Dependencies file "demos/CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/depend Consolidate compiler generated dependencies of target demo_blast_blast_in_lowlevel make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 25%] Built target demo_blast_blast_in_lowlevel make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_align_align make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/compiler_depend.internal". [ 26%] Built target demo_dox_align_align make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_align_gaps_example Consolidate compiler generated dependencies of target demo_dox_align_compute_alignment_stats make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_gaps_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/compiler_depend.internal". [ 26%] Built target demo_dox_align_gaps_example make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/compiler_depend.internal". [ 26%] Built target demo_dox_align_compute_alignment_stats make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_align_global_alignment_banded make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/compiler_depend.internal". [ 26%] Built target demo_dox_align_global_alignment_banded make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/depend Consolidate compiler generated dependencies of target demo_dox_align_global_alignment_unbanded make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_align_integrate_align [ 26%] Built target demo_dox_align_global_alignment_unbanded make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build Dependencies file "demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_integrate_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/compiler_depend.internal". [ 27%] Built target demo_dox_align_integrate_align make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_align_extend_extend_alignment make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build Consolidate compiler generated dependencies of target demo_dox_align_profile_profile_seq_frac_score make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build Dependencies file "demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 27%] Built target demo_dox_align_extend_extend_alignment make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/depend [ 27%] Built target demo_dox_align_profile_profile_seq_frac_score make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/depend Consolidate compiler generated dependencies of target demo_dox_align_profile_profile_seq_score make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/DependInfo.cmake "--color=" [ 27%] Built target demo_dox_align_profile_profile_seq_score make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_align_split_split_alignment make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build Dependencies file "demos/CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_basic_enable_if make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_enable_if.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_arg_parse_argument_parser Consolidate compiler generated dependencies of target demo_dox_bam_io_bam_tags_dict make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build [ 27%] Built target demo_dox_align_split_split_alignment Dependencies file "demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/compiler_depend.internal". [ 27%] Built target demo_dox_basic_enable_if make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake "--color=" [ 27%] Built target demo_dox_arg_parse_argument_parser make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/depend [ 29%] Built target demo_dox_bam_io_bam_tags_dict make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_bam_io_bam_file_in make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/DependInfo.cmake "--color=" [ 29%] Built target demo_dox_bam_io_bam_file_in make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_basic_metaprogramming_control make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/compiler_depend.internal". [ 29%] Built target demo_dox_basic_metaprogramming_control make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/depend Consolidate compiler generated dependencies of target demo_dox_basic_metaprogramming_logic make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/DependInfo.cmake "--color=" [ 29%] Built target demo_dox_basic_metaprogramming_logic Consolidate compiler generated dependencies of target demo_dox_basic_metaprogramming_math make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_basic_metaprogramming_math make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_basic_metaprogramming_switch make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build Dependencies file "demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 29%] Built target demo_dox_basic_metaprogramming_switch make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/depend Consolidate compiler generated dependencies of target demo_dox_basic_simple_type_construction make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/compiler_depend.internal". [ 30%] Built target demo_dox_basic_simple_type_construction make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/depend Consolidate compiler generated dependencies of target demo_dox_bed_io_UNUSED_bed_stream_read make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_basic_zip_iterator make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build Consolidate compiler generated dependencies of target demo_dox_consensus_consensus_alignment make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 30%] Built target demo_dox_basic_zip_iterator make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/depend [ 30%] Built target demo_dox_consensus_consensus_alignment make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_find_finder_aho_corasick make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake "--color=" [ 30%] Built target demo_dox_find_finder_aho_corasick make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend Consolidate compiler generated dependencies of target demo_dox_find_finder_online make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_find_finder_index make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build Dependencies file "demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_online.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_index.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/compiler_depend.internal". [ 31%] Built target demo_dox_find_finder_online make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend [ 31%] Built target demo_dox_find_finder_index make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend Consolidate compiler generated dependencies of target demo_dox_gff_io_UNUSED_gff_stream_read make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_gff_io_UNUSED_gff_stream_read make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/depend Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_all_pairs_shortest_path make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_bellman_ford_algorithm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_breadth_first_search Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build [ 31%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_dag_shortest_path make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build [ 31%] Built target demo_dox_graph_algorithms_breadth_first_search make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_dijkstra make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 31%] Built target demo_dox_graph_algorithms_dag_shortest_path make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend [ 31%] Built target demo_dox_graph_algorithms_dijkstra make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_depth_first_search make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake "--color=" [ 32%] Built target demo_dox_graph_algorithms_depth_first_search make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_floyd_warshall_algorithm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_ford_fulkerson_algorithm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_kruskals_algorithm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_ford_fulkerson_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_heaviest_increasing_subsequence make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 32%] Built target demo_dox_graph_algorithms_kruskals_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/compiler_depend.internal". [ 32%] Built target demo_dox_graph_algorithms_heaviest_increasing_subsequence make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_longest_common_subsequence make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/compiler_depend.internal". [ 33%] Built target demo_dox_graph_algorithms_longest_common_subsequence make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_longest_increasing_subsequence make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_prims_algorithm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 33%] Built target demo_dox_graph_algorithms_longest_increasing_subsequence Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_strongly_connected_components Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend [ 33%] Built target demo_dox_graph_algorithms_prims_algorithm make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake "--color=" [ 33%] Built target demo_dox_graph_algorithms_strongly_connected_components make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/depend Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_topological_sort make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/compiler_depend.internal". [ 33%] Built target demo_dox_graph_algorithms_topological_sort make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_graph_algorithms_transitive_closure Dependencies file "demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/DependInfo.cmake "--color=" [ 33%] Built target demo_dox_graph_algorithms_transitive_closure make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_graph_align_graph_align make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/compiler_depend.internal". [ 34%] Built target demo_dox_graph_align_graph_align make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/depend Consolidate compiler generated dependencies of target demo_dox_graph_types_graph_algo_dijkstra make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build Dependencies file "demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_index_UNUSED_shape_hash make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/DependInfo.cmake "--color=" [ 34%] Built target demo_dox_index_UNUSED_shape_hash [ 34%] Built target demo_dox_graph_types_graph_algo_dijkstra Consolidate compiler generated dependencies of target demo_dox_index_UNUSED_shape make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/depend make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/compiler_depend.internal". [ 34%] Built target demo_dox_index_UNUSED_shape make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend Consolidate compiler generated dependencies of target demo_dox_index_begin_atEnd_representative make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build Consolidate compiler generated dependencies of target demo_dox_index_UNUSED_shape_hash_next make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake "--color=" [ 34%] Built target demo_dox_index_begin_atEnd_representative make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake "--color=" [ 34%] Built target demo_dox_index_UNUSED_shape_hash_next make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_index_counting make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_counting.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_index_counting Dependencies file "demos/CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/depend Consolidate compiler generated dependencies of target demo_dox_index_begin_atEnd_representative_bottomUp Consolidate compiler generated dependencies of target demo_dox_index_find_repeats make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/build make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build Dependencies file "demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_find_repeats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 34%] Built target demo_dox_index_find_repeats make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend Consolidate compiler generated dependencies of target demo_dox_index_begin_range_goDown_representative_repLength make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build [ 35%] Built target demo_dox_index_begin_atEnd_representative_bottomUp make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_index_getOccurrences_getFrequency_range_getFibre [ 35%] Built target demo_dox_index_begin_range_goDown_representative_repLength make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build Dependencies file "demos/CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_length_countSequences.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_index_finder make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build Dependencies file "demos/CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_index_iterator_short make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_finder.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/build Dependencies file "demos/CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_length_countSequences.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator_short.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre Consolidate compiler generated dependencies of target demo_dox_index_length_countSequences make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/compiler_depend.internal". [ 35%] Built target demo_dox_index_finder make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_index_iterator make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_iterator_short make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 35%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_index_maxrepeats Dependencies file "demos/CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build Consolidate compiler generated dependencies of target demo_dox_index_mummy make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/build [ 36%] Built target demo_dox_index_iterator make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mummy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_maxrepeats Dependencies file "demos/CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/depend Consolidate compiler generated dependencies of target demo_dox_index_mums make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build Consolidate compiler generated dependencies of target demo_dox_index_node_predicate make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 36%] Built target demo_dox_index_mummy make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mums.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/compiler_depend.internal". make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_node_predicate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_index_open_save make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build [ 36%] Built target demo_dox_index_mums make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_index_shape_hash_init Dependencies file "demos/CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build [ 37%] Built target demo_dox_index_node_predicate make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_open_save.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_index_sufarray make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_sufarray.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 37%] Built target demo_dox_index_open_save make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/depend [ 37%] Built target demo_dox_index_sufarray Dependencies file "demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_index_supermaxrepeats make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/compiler_depend.internal". [ 37%] Built target demo_dox_index_shape_hash_init make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/compiler_depend.internal". [ 37%] Built target demo_dox_index_supermaxrepeats make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_misc_enumerate_strings Consolidate compiler generated dependencies of target demo_dox_index_textAt_indexText_saAt_indexRequire make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build Dependencies file "demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build Consolidate compiler generated dependencies of target demo_dox_misc_get_terminal_size make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_misc_interval_tree_example Dependencies file "demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build [ 38%] Built target demo_dox_misc_enumerate_strings make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend Consolidate compiler generated dependencies of target demo_dox_misc_name_store_cache [ 38%] Built target demo_dox_index_textAt_indexText_saAt_indexRequire make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build [ 38%] Built target demo_dox_misc_get_terminal_size make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_modifier_cyclic_shape make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build [ 38%] Built target demo_dox_misc_interval_tree_example [ 38%] Built target demo_dox_misc_name_store_cache make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/depend make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend [ 38%] Built target demo_dox_modifier_cyclic_shape make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_modifier_cyclic_shape_snippets Dependencies file "demos/CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build Consolidate compiler generated dependencies of target demo_dox_modifier_modified_string Dependencies file "demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build Consolidate compiler generated dependencies of target demo_dox_modifier_modified_string_mod_view make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_modifier_modified_string_nested [ 38%] Built target demo_dox_modifier_cyclic_shape_snippets make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_parallel_queue_example make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 38%] Built target demo_dox_parallel_queue_example [ 38%] Built target demo_dox_modifier_modified_string_mod_view make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend [ 39%] Built target demo_dox_modifier_modified_string make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_parallel_splitter_example make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build [ 39%] Built target demo_dox_modifier_modified_string_nested Dependencies file "demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_pipe_pool_sorter make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_seeds_seeds_add_seed Consolidate compiler generated dependencies of target demo_dox_score_score make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build Dependencies file "demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/compiler_depend.internal". [ 39%] Built target demo_dox_parallel_splitter_example make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_seeds_seeds_chaining make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_score_score.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build [ 39%] Built target demo_dox_pipe_pool_sorter make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 39%] Built target demo_dox_seeds_seeds_add_seed Dependencies file "demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_seeds_seeds_extension make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_score_score make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 40%] Built target demo_dox_seeds_seeds_chaining make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/DependInfo.cmake "--color=" [ 40%] Built target demo_dox_seeds_seeds_extension make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/depend Dependencies file "demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_dox_seq_io_fai_index_example Dependencies file "demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_sequence_UNUSED_infix make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build Dependencies file "demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build Dependencies file "demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_sequence_UNUSED_prefix make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_sequence_UNUSED_suffix make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/compiler_depend.internal". [ 40%] Built target demo_dox_seq_io_fai_index_example [ 40%] Built target demo_dox_sequence_UNUSED_infix Consolidate compiler generated dependencies of target demo_dox_sequence_container_view_zip make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/DependInfo.cmake "--color=" [ 40%] Built target demo_dox_sequence_UNUSED_suffix make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/depend [ 41%] Built target demo_dox_sequence_UNUSED_prefix make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake "--color=" [ 41%] Built target demo_dox_sequence_container_view_zip make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_sequence_string make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/build Dependencies file "demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_sequence_string2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_sequence_segment make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/build make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_string.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_dox_sequence_stringset make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_segment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build Consolidate compiler generated dependencies of target demo_dox_statistics_build_markov_model make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_string2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_stringset.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 41%] Built target demo_dox_sequence_segment make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/depend [ 41%] Built target demo_dox_sequence_string make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend [ 41%] Built target demo_dox_sequence_string2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/DependInfo.cmake "--color=" [ 43%] Built target demo_dox_sequence_stringset [ 43%] Built target demo_dox_statistics_build_markov_model make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_stream_lexical_cast Dependencies file "demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build Consolidate compiler generated dependencies of target demo_howto_align_gaps_clipping Consolidate compiler generated dependencies of target demo_dox_store_store_example Dependencies file "demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_dox_statistics_load_markov_model make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_store_store_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_howto_custom_file_endings make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 43%] Built target demo_dox_stream_lexical_cast make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_custom_file_endings.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake "--color=" [ 43%] Built target demo_dox_store_store_example make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake "--color=" [ 43%] Built target demo_dox_statistics_load_markov_model [ 44%] Built target demo_howto_custom_file_endings make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/compiler_depend.internal". [ 44%] Built target demo_howto_align_gaps_clipping make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_howto_efficiently_import_sequences cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build Dependencies file "demos/CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_howto_scores_init_score Consolidate compiler generated dependencies of target demo_howto_filter_similar_sequences make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_howto_scores_load_score make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_init_score.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_load_score.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 44%] Built target demo_howto_efficiently_import_sequences make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_howto_using_zip_iterator [ 44%] Built target demo_howto_scores_init_score [ 44%] Built target demo_howto_scores_load_score [ 44%] Built target demo_howto_filter_similar_sequences make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build Dependencies file "demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tabix_io_tabix_vcf make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/compiler_depend.internal". make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_basic_code_detailed make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_basic_code make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build [ 45%] Built target demo_tabix_io_tabix_vcf make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/depend [ 45%] Built target demo_howto_using_zip_iterator make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build [ 45%] Built target demo_tutorial_a_first_example_basic_code_detailed make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_tutorial_a_first_example_basic_code make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_example_tags make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_code_encapsulation Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_tutorial_a_first_example_base Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_example_tags_for_print make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/DependInfo.cmake "--color=" make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_example_tempSubclassing make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_tutorial_a_first_example_example_tags make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 45%] Built target demo_tutorial_a_first_example_code_encapsulation make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/compiler_depend.internal". [ 46%] Built target demo_tutorial_a_first_example_example_tags_for_print make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_final_result Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build [ 46%] Built target demo_tutorial_a_first_example_example_tempSubclassing make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build [ 46%] Built target demo_tutorial_a_first_example_final_result make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build [ 46%] Built target demo_tutorial_a_first_example_solution_3 [ 46%] Built target demo_tutorial_a_first_example_solution_1 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_4 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_4_templateSubclassing make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_5 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 46%] Built target demo_tutorial_a_first_example_solution_2 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build Consolidate compiler generated dependencies of target demo_tutorial_a_first_example_solution_6 make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align.dir/DependInfo.cmake "--color=" [ 47%] Built target demo_tutorial_a_first_example_solution_4 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align.dir/compiler_depend.internal". [ 47%] Built target demo_tutorial_a_first_example_solution_5 make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake "--color=" [ 47%] Built target demo_tutorial_a_first_example_solution_6 make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_alignment_align make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/build Consolidate compiler generated dependencies of target demo_tutorial_alignment_align_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_alignment_graph make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build Consolidate compiler generated dependencies of target demo_tutorial_alignment_graph_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_alignment_align make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build Consolidate compiler generated dependencies of target demo_tutorial_alignment_scoring_scheme_affine_dgs make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 47%] Built target demo_tutorial_alignment_align_assignment1 make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/DependInfo.cmake "--color=" [ 47%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend [ 48%] Built target demo_tutorial_alignment_graph make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend [ 48%] Built target demo_tutorial_alignment_graph_assignment1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_alignment_scoring_scheme_simple Consolidate compiler generated dependencies of target demo_tutorial_alignment_scoring_scheme_matrix make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build Consolidate compiler generated dependencies of target demo_tutorial_alphabets_assignment_1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_alphabets_assignment_1_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_alphabets_example_bitsPerValue make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 48%] Built target demo_tutorial_alignment_scoring_scheme_matrix [ 48%] Built target demo_tutorial_alignment_scoring_scheme_simple make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend [ 48%] Built target demo_tutorial_alphabets_assignment_1 make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake "--color=" [ 49%] Built target demo_tutorial_alphabets_assignment_1_solution [ 49%] Built target demo_tutorial_alphabets_example_bitsPerValue make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_alphabets_example_ordValue Dependencies file "demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_alphabets_example_size make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build Consolidate compiler generated dependencies of target demo_tutorial_background_and_motivation_example make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build Consolidate compiler generated dependencies of target demo_tutorial_basic_techniques_base make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alphabets_example_ordValue make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 49%] Built target demo_tutorial_alphabets_example_size Consolidate compiler generated dependencies of target demo_tutorial_basics_allocator make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/compiler_depend.internal". [ 49%] Built target demo_tutorial_background_and_motivation_example [ 49%] Built target demo_tutorial_basic_techniques_base make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/compiler_depend.internal". [ 50%] Built target demo_tutorial_basics_allocator make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_base.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_basics_base Consolidate compiler generated dependencies of target demo_tutorial_bed_io_example1 Consolidate compiler generated dependencies of target demo_tutorial_bed_io_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_basics_show_alphabets make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build Consolidate compiler generated dependencies of target demo_tutorial_basics_strings make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_strings.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 50%] Built target demo_tutorial_basics_base make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/depend [ 50%] Built target demo_tutorial_bed_io_base [ 50%] Built target demo_tutorial_bed_io_example1 [ 50%] Built target demo_tutorial_basics_show_alphabets make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake "--color=" [ 50%] Built target demo_tutorial_basics_strings make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_bed_io_solution2 Consolidate compiler generated dependencies of target demo_tutorial_bed_io_solution3 Consolidate compiler generated dependencies of target demo_tutorial_bed_io_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_blast_io_read_assignment Consolidate compiler generated dependencies of target demo_tutorial_blast_io_write_assignment make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_bed_io_solution1 [ 51%] Built target demo_tutorial_blast_io_read_assignment [ 51%] Built target demo_tutorial_bed_io_solution3 [ 51%] Built target demo_tutorial_bed_io_solution2 [ 51%] Built target demo_tutorial_blast_io_write_assignment make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/depend make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_consensus_alignment_without_positions make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build Consolidate compiler generated dependencies of target demo_tutorial_consensus_alignment_with_positions Consolidate compiler generated dependencies of target demo_tutorial_file_io_overview_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build Consolidate compiler generated dependencies of target demo_tutorial_file_io_overview_solution2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_file_io_overview_example1 make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_consensus_alignment_without_positions make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 51%] Built target demo_tutorial_file_io_overview_solution1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/depend [ 51%] Built target demo_tutorial_file_io_overview_example1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake "--color=" [ 52%] Built target demo_tutorial_consensus_alignment_with_positions make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/depend [ 52%] Built target demo_tutorial_file_io_overview_solution2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_fragment_store_access_aligned_reads Dependencies file "demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_file_io_overview_solution3 Consolidate compiler generated dependencies of target demo_tutorial_fragment_store_access_aligned_reads2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_fragment_store_base make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_fragment_store_display_aligned_reads make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Built target demo_tutorial_fragment_store_access_aligned_reads make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/depend [ 53%] Built target demo_tutorial_fragment_store_base [ 53%] Built target demo_tutorial_fragment_store_access_aligned_reads2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/DependInfo.cmake "--color=" [ 53%] Built target demo_tutorial_file_io_overview_solution3 make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/compiler_depend.internal". [ 53%] Built target demo_tutorial_fragment_store_display_aligned_reads make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_generic_programming_example_hashing Dependencies file "demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_generic_programming_template_subclassing make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_genome_annotations_assignment_2_solution Consolidate compiler generated dependencies of target demo_tutorial_genome_annotations_assignment_1_hint make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_genome_annotations_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Built target demo_tutorial_generic_programming_example_hashing make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 53%] Built target demo_tutorial_generic_programming_template_subclassing make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake "--color=" [ 54%] Built target demo_tutorial_genome_annotations_assignment_1_hint make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/DependInfo.cmake "--color=" [ 54%] Built target demo_tutorial_genome_annotations_assignment_2_solution [ 54%] Built target demo_tutorial_genome_annotations_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_genome_annotations_assignment_3_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_genome_annotations_assignment_4_solution Consolidate compiler generated dependencies of target demo_tutorial_genome_annotations_base make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/compiler_depend.internal". [ 54%] Built target demo_tutorial_genome_annotations_assignment_3_solution make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_gff_and_gtf_io_example1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_gff_and_gtf_io_base make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 54%] Built target demo_tutorial_genome_annotations_base make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 54%] Built target demo_tutorial_genome_annotations_assignment_4_solution Dependencies file "demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_gff_and_gtf_io_example2 make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_gff_and_gtf_io_base Dependencies file "demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/compiler_depend.internal". [ 55%] Built target demo_tutorial_gff_and_gtf_io_example1 make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake "--color=" [ 55%] Built target demo_tutorial_gff_and_gtf_io_example2 Consolidate compiler generated dependencies of target demo_tutorial_gff_and_gtf_io_solution1 Consolidate compiler generated dependencies of target demo_tutorial_gff_and_gtf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/compiler_depend.internal". make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build Consolidate compiler generated dependencies of target demo_tutorial_graph_graph_algo_scc make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build Consolidate compiler generated dependencies of target demo_tutorial_gff_and_gtf_io_solution3 Dependencies file "demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 55%] Built target demo_tutorial_gff_and_gtf_io_solution2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build Consolidate compiler generated dependencies of target demo_tutorial_graph_graph_dijkstra make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build [ 55%] Built target demo_tutorial_gff_and_gtf_io_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/depend make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake "--color=" [ 55%] Built target demo_tutorial_gff_and_gtf_io_solution3 [ 55%] Built target demo_tutorial_graph_graph_dijkstra make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/depend [ 56%] Built target demo_tutorial_graph_graph_algo_scc make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_graph_solution_1 Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_bidirectional_search Consolidate compiler generated dependencies of target demo_tutorial_graph_graph_hmm make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_assignment2 make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 56%] Built target demo_tutorial_index_iterators_index_assignment1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/depend [ 58%] Built target demo_tutorial_index_iterators_index_bidirectional_search make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake "--color=" [ 58%] Built target demo_tutorial_graph_graph_hmm [ 58%] Built target demo_tutorial_graph_solution_1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/depend [ 58%] Built target demo_tutorial_index_iterators_index_assignment2 Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_preorder make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_property_maps make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_search make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 58%] Built target demo_tutorial_index_iterators_index_property_maps make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_index_search2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake "--color=" [ 58%] Built target demo_tutorial_index_iterators_index_preorder make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_iterator_assignment2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/compiler_depend.internal". [ 58%] Built target demo_tutorial_index_iterators_index_search make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend [ 58%] Built target demo_tutorial_index_iterators_index_search2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_iterator_solution2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_iterator_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_indexed_fasta_io_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_index_iterators_iterator_solution3 [ 58%] Built target demo_tutorial_index_iterators_iterator_solution2 [ 58%] Built target demo_tutorial_index_iterators_iterator_assignment2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend [ 59%] Built target demo_tutorial_index_iterators_iterator_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/compiler_depend.internal". [ 59%] Built target demo_tutorial_indexed_fasta_io_base make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_indexed_fasta_io_solution2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_indexed_fasta_io_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build Consolidate compiler generated dependencies of target demo_tutorial_indices_assignment_1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build Consolidate compiler generated dependencies of target demo_tutorial_indices_assignment_2 [ 59%] Built target demo_tutorial_index_iterators_iterator_solution3 make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build [ 59%] Built target demo_tutorial_indexed_fasta_io_solution2 make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 60%] Built target demo_tutorial_indices_assignment_1 make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/compiler_depend.internal". [ 60%] Built target demo_tutorial_indexed_fasta_io_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/DependInfo.cmake "--color=" [ 60%] Built target demo_tutorial_indices_assignment_2 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/depend make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_indices_find2_index_approx Consolidate compiler generated dependencies of target demo_tutorial_indices_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_iterators_assignment_1_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_indices_fm_index Consolidate compiler generated dependencies of target demo_tutorial_iterators_assignment_1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 60%] Built target demo_tutorial_indices_find2_index_approx [ 61%] Built target demo_tutorial_iterators_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/depend [ 61%] Built target demo_tutorial_indices_base make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/DependInfo.cmake "--color=" [ 61%] Built target demo_tutorial_indices_fm_index [ 61%] Built target demo_tutorial_iterators_assignment_1 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_iterators_assignment_3_workshop make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build Consolidate compiler generated dependencies of target demo_tutorial_iterators_assignment_3_workshop_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_iterators_assignment_2_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_iterators_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_iterators_assignment_4_workshop_solution make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build [ 61%] Built target demo_tutorial_iterators_assignment_3_workshop [ 61%] Built target demo_tutorial_iterators_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/depend [ 61%] Built target demo_tutorial_iterators_assignment_2_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/compiler_depend.internal". [ 61%] Built target demo_tutorial_iterators_base make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_example_join [ 61%] Built target demo_tutorial_iterators_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_base make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build Consolidate compiler generated dependencies of target demo_tutorial_iterators_sequence_iterator_demo make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_example_journal_string_basic Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 61%] Built target demo_tutorial_journaled_set_example_join make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build [ 61%] Built target demo_tutorial_journaled_set_base make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_example_online_search make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 62%] Built target demo_tutorial_iterators_sequence_iterator_demo make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/compiler_depend.internal". [ 62%] Built target demo_tutorial_journaled_set_example_journal_string_basic make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/compiler_depend.internal". cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/DependInfo.cmake "--color=" [ 62%] Built target demo_tutorial_journaled_set_example_online_search make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment1 Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_example_online_search_assignment1_hint make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment2 [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build [ 63%] Built target demo_tutorial_journaled_set_example_online_search_assignment1_hint make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment4 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/compiler_depend.internal". [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_journaled_string_tree_journaled_string_tree_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build Consolidate compiler generated dependencies of target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build Consolidate compiler generated dependencies of target demo_tutorial_metafunctions_assignment1_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 63%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_metafunctions_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_modifiers_UNUSED_modcomplementdna [ 63%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/DependInfo.cmake "--color=" [ 63%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/DependInfo.cmake "--color=" [ 64%] Built target demo_tutorial_metafunctions_assignment1_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build [ 64%] Built target demo_tutorial_metafunctions_base Dependencies file "demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_modifiers_assignment1_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_modifiers_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_modifiers_modreverse [ 64%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build [ 64%] Built target demo_tutorial_modifiers_assignment1_solution Dependencies file "demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/DependInfo.cmake "--color=" [ 64%] Built target demo_tutorial_modifiers_assignment1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_modifiers_modview make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/compiler_depend.internal". [ 64%] Built target demo_tutorial_modifiers_modreverse make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_modifiers_nested Consolidate compiler generated dependencies of target demo_tutorial_multiple_sequence_alignment_assignment1 make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_multiple_sequence_alignment_consensus [ 65%] Built target demo_tutorial_modifiers_modview make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/DependInfo.cmake "--color=" [ 65%] Built target demo_tutorial_modifiers_nested make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_multiple_sequence_alignment_msa make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build [ 65%] Built target demo_tutorial_multiple_sequence_alignment_assignment1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake "--color=" [ 65%] Built target demo_tutorial_multiple_sequence_alignment_consensus make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake "--color=" [ 65%] Built target demo_tutorial_multiple_sequence_alignment_msa make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_banded make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build [ 65%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_banded Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/compiler_depend.internal". [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/DependInfo.cmake "--color=" [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_local Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 66%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5 [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/depend make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake "--color=" [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/compiler_depend.internal". [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build [ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake "--color=" [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake "--color=" [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/compiler_depend.internal". [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_assignment3_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_assignment2_solution Consolidate compiler generated dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_assignment4_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/compiler_depend.internal". [ 68%] Built target demo_tutorial_parsing_command_line_arguments_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/DependInfo.cmake "--color=" [ 68%] Built target demo_tutorial_parsing_command_line_arguments_assignment4_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_assignment5_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake "--color=" [ 68%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/compiler_depend.internal". [ 68%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/depend make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_assignment6_solution make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_example1 Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_example1_detailed make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_base make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/compiler_depend.internal". [ 69%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/depend [ 69%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_own_function Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/compiler_depend.internal". [ 69%] Built target demo_tutorial_parsing_command_line_arguments_example1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_struct make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 69%] Built target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_parsing_command_line_arguments_final_solution [ 70%] Built target demo_tutorial_parsing_command_line_arguments_example_with_own_function make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/compiler_depend.internal". [ 70%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_assignment1_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_assignment1 Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_assignment2 [ 70%] Built target demo_tutorial_parsing_command_line_arguments_final_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_assignment2_solution [ 70%] Built target demo_tutorial_pattern_matching_assignment2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/compiler_depend.internal". [ 70%] Built target demo_tutorial_pattern_matching_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/DependInfo.cmake "--color=" [ 70%] Built target demo_tutorial_pattern_matching_assignment1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_assignment3 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_assignment3_solution Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_find_approx make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_find_exact make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_assignment3 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/compiler_depend.internal". [ 72%] Built target demo_tutorial_pattern_matching_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_find_index make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build [ 72%] Built target demo_tutorial_pattern_matching_find_exact Consolidate compiler generated dependencies of target demo_tutorial_pattern_matching_find_index_multiple make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 72%] Built target demo_tutorial_pattern_matching_find_approx Dependencies file "demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_q_gram_index_index_assignment5 Dependencies file "demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build [ 72%] Built target demo_tutorial_pattern_matching_find_index make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend [ 73%] Built target demo_tutorial_pattern_matching_find_index_multiple make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_q_gram_index_index_assignment6 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/depend make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 73%] Built target demo_tutorial_q_gram_index_index_assignment5 Dependencies file "demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step2.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_q_gram_index_index_qgram make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/compiler_depend.internal". [ 73%] Built target demo_tutorial_q_gram_index_index_assignment6 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_q_gram_index_index_qgram_hash make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_realignment_step1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_realignment_step2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/DependInfo.cmake "--color=" [ 73%] Built target demo_tutorial_q_gram_index_index_qgram make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/DependInfo.cmake "--color=" [ 74%] Built target demo_tutorial_realignment_step2 [ 74%] Built target demo_tutorial_q_gram_index_index_qgram_hash [ 74%] Built target demo_tutorial_realignment_step1 Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_example1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_base Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_example2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_example7 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_example1 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_base make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/compiler_depend.internal". [ 74%] Built target demo_tutorial_sam_and_bam_io_example2 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_solution2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_example7 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build [ 74%] Built target demo_tutorial_sam_and_bam_io_solution1 Dependencies file "demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_sam_and_bam_io_solution3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/DependInfo.cmake "--color=" [ 75%] Built target demo_tutorial_sam_and_bam_io_solution2 Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example1 [ 75%] Built target demo_tutorial_sam_and_bam_io_solution3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example3 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example4 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_seed_and_extend_example1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_seed_and_extend_example3 Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example5 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 75%] Built target demo_tutorial_seed_and_extend_example2 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example6 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_example7 [ 75%] Built target demo_tutorial_seed_and_extend_example4 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build [ 76%] Built target demo_tutorial_seed_and_extend_example5 Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build [ 76%] Built target demo_tutorial_seed_and_extend_example6 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_solution3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Built target demo_tutorial_seed_and_extend_example7 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_solution2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 76%] Built target demo_tutorial_seed_and_extend_solution1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/DependInfo.cmake "--color=" [ 76%] Built target demo_tutorial_seed_and_extend_solution3 Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_solution4 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_solution5 [ 76%] Built target demo_tutorial_seed_and_extend_solution2 make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build [ 77%] Built target demo_tutorial_seed_and_extend_solution4 make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_seed_and_extend_solution6 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/compiler_depend.internal". [ 77%] Built target demo_tutorial_seed_and_extend_solution5 Consolidate compiler generated dependencies of target demo_tutorial_seeds_example1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sequence_io_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_seeds_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 77%] Built target demo_tutorial_seed_and_extend_solution6 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/DependInfo.cmake "--color=" [ 77%] Built target demo_tutorial_sequence_io_base make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_sequence_io_example1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build [ 77%] Built target demo_tutorial_seeds_example1 Dependencies file "demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/compiler_depend.internal". [ 77%] Built target demo_tutorial_seeds_solution1 Dependencies file "demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sequence_io_solution2 Consolidate compiler generated dependencies of target demo_tutorial_sequence_io_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_sequence_io_solution3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build Consolidate compiler generated dependencies of target demo_tutorial_sequence_io_solution4 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 78%] Built target demo_tutorial_sequence_io_example1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/depend [ 78%] Built target demo_tutorial_sequence_io_solution3 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake "--color=" [ 78%] Built target demo_tutorial_sequence_io_solution2 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend [ 78%] Built target demo_tutorial_sequence_io_solution1 [ 78%] Built target demo_tutorial_sequence_io_solution4 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_2_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_1_solution Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_3 Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_3_solution Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_4_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 79%] Built target demo_tutorial_sequences_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake "--color=" [ 79%] Built target demo_tutorial_sequences_assignment_3 [ 79%] Built target demo_tutorial_sequences_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/depend [ 79%] Built target demo_tutorial_sequences_assignment_3_solution [ 79%] Built target demo_tutorial_sequences_assignment_4_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_5_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_sequences_example_conversions_copy make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build Consolidate compiler generated dependencies of target demo_tutorial_sequences_assignment_6_solution make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sequences_base Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build Consolidate compiler generated dependencies of target demo_tutorial_sequences_example_comparisons [ 79%] Built target demo_tutorial_sequences_assignment_5_solution make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build [ 79%] Built target demo_tutorial_sequences_example_conversions_copy Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend [ 79%] Built target demo_tutorial_sequences_assignment_6_solution make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_sequences_example_conversions_move make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build [ 80%] Built target demo_tutorial_sequences_base make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/compiler_depend.internal". [ 80%] Built target demo_tutorial_sequences_example_comparisons make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_sequences_example_functionality1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequences_example_conversions_move make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_sequences_example_functionality2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/compiler_depend.internal". [ 80%] Built target demo_tutorial_sequences_example_functionality1 Consolidate compiler generated dependencies of target demo_tutorial_sequences_example_segments make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 80%] Built target demo_tutorial_sequences_example_functionality2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_sequences_in_depth_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_example_segments make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_sequences_in_depth_example_overflow make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend [ 81%] Built target demo_tutorial_sequences_in_depth_base make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build [ 81%] Built target demo_tutorial_sequences_in_depth_example_overflow Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build'. Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build [ 81%] Built target demo_tutorial_simple_rna_seq_base Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 81%] Built target demo_tutorial_simple_rna_seq_genequant_assignment1 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/compiler_depend.internal". [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment4 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/compiler_depend.internal". [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment5 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_solution1 make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/compiler_depend.internal". [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment4 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_solution2 [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_assignment5 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_solution3 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/DependInfo.cmake "--color=" [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build'. make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/compiler_depend.internal". [ 82%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_solution4 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_genequant_solution5 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_solution3 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_simple_rna_seq_interval_tree Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_solution4 Consolidate compiler generated dependencies of target demo_tutorial_string_sets_assignment_2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build'. make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build [ 83%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_string_sets_assignment_1_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_string_sets_assignment_2_solution [ 83%] Built target demo_tutorial_string_sets_assignment_2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build [ 83%] Built target demo_tutorial_simple_rna_seq_interval_tree make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 83%] Built target demo_tutorial_string_sets_assignment_1_solution Consolidate compiler generated dependencies of target demo_tutorial_string_sets_assignment_3_workshop_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_string_sets_assignment_4_workshop_solution [ 84%] Built target demo_tutorial_string_sets_assignment_2_solution make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/DependInfo.cmake "--color=" [ 84%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_string_sets_base cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_string_sets_example_functionality make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build [ 84%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_tutorial_string_sets_example_functionality_2 [ 84%] Built target demo_tutorial_string_sets_base make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/depend Consolidate compiler generated dependencies of target demo_tutorial_string_sets_example_iterators make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build [ 84%] Built target demo_tutorial_string_sets_example_functionality make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_vcf_io_base make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 84%] Built target demo_tutorial_string_sets_example_functionality_2 Dependencies file "demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_tutorial_vcf_io_example1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build [ 84%] Built target demo_tutorial_vcf_io_base make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/depend Dependencies file "demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/compiler_depend.internal". [ 86%] Built target demo_tutorial_string_sets_example_iterators make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_vcf_io_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_tutorial_vcf_io_solution2 Dependencies file "demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build Consolidate compiler generated dependencies of target demo_tutorial_vcf_io_solution3 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build [ 86%] Built target demo_tutorial_vcf_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 86%] Built target demo_tutorial_vcf_io_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_alphabet Consolidate compiler generated dependencies of target demo_tutorial_workflows_knime_node make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build [ 86%] Built target demo_tutorial_vcf_io_solution2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/compiler_depend.internal". [ 86%] Built target demo_tutorial_vcf_io_solution3 make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_annotation_converter make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build [ 86%] Built target demo_unassigned_or_unused_alphabet Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/compiler_depend.internal". [ 87%] Built target demo_tutorial_workflows_knime_node make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_arg_align make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_bam_library_size make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build [ 87%] Built target demo_unassigned_or_unused_annotation_converter make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_bam_print_alignments make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build [ 87%] Built target demo_unassigned_or_unused_arg_align Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_bamutil Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_benchmark_stream [ 87%] Built target demo_unassigned_or_unused_bam_library_size make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_benchmark_stream_write make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build [ 87%] Built target demo_unassigned_or_unused_bam_print_alignments make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_file_format Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/compiler_depend.internal". [ 88%] Built target demo_unassigned_or_unused_bamutil make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build [ 88%] Built target demo_unassigned_or_unused_benchmark_stream make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/depend Consolidate compiler generated dependencies of target demo_unassigned_or_unused_file_readwrite make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_benchmark_stream_write make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/compiler_depend.internal". [ 88%] Built target demo_unassigned_or_unused_file_format Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/compiler_depend.internal". [ 88%] Built target demo_unassigned_or_unused_file_readwrite Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_filter_sam Consolidate compiler generated dependencies of target demo_unassigned_or_unused_file_speed make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_find_wild make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_gff2gtf make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_graph_hmm_silent make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_file_speed make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 89%] Built target demo_unassigned_or_unused_filter_sam make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/depend [ 89%] Built target demo_unassigned_or_unused_find_wild make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake "--color=" [ 89%] Built target demo_unassigned_or_unused_gff2gtf make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/compiler_depend.internal". [ 89%] Built target demo_unassigned_or_unused_graph_hmm_silent make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_find_stringset make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_lcp make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/compiler_depend.internal". [ 89%] Built target demo_unassigned_or_unused_index_find_stringset make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_node_predicate Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_mums make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build [ 90%] Built target demo_unassigned_or_unused_index_lcp make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_find make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_qgram_counts make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_mums Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_sufarray make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_node_predicate [ 90%] Built target demo_unassigned_or_unused_index_qgram_counts make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/depend [ 90%] Built target demo_unassigned_or_unused_index_find make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_index_supermaxrepeats make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_modifier_modreverse Consolidate compiler generated dependencies of target demo_unassigned_or_unused_iterator make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_sufarray make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_minimapper make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target demo_unassigned_or_unused_index_supermaxrepeats make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/DependInfo.cmake "--color=" [ 91%] Built target demo_unassigned_or_unused_iterator Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/depend [ 91%] Built target demo_unassigned_or_unused_minimapper make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_modifier_modview make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build [ 91%] Built target demo_unassigned_or_unused_modifier_modreverse make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/depend Consolidate compiler generated dependencies of target demo_unassigned_or_unused_modifier_nested make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_parse_lm_stellar make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_rooted_iterator make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/compiler_depend.internal". [ 91%] Built target demo_unassigned_or_unused_modifier_modview make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/DependInfo.cmake "--color=" [ 91%] Built target demo_unassigned_or_unused_modifier_nested make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_sam2svg make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build [ 92%] Built target demo_unassigned_or_unused_rooted_iterator Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake "--color=" make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_parse_lm_stellar make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/DependInfo.cmake "--color=" Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_seeds make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_sample_seqs make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/compiler_depend.internal". [ 92%] Built target demo_unassigned_or_unused_sam2svg make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_segmentalignment make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_sequence_length make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/compiler_depend.internal". [ 92%] Built target demo_unassigned_or_unused_seeds make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_soft_to_hard_masking make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target demo_unassigned_or_unused_sample_seqs [ 92%] Built target demo_unassigned_or_unused_segmentalignment make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/depend Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/DependInfo.cmake "--color=" [ 92%] Built target demo_unassigned_or_unused_sequence_length make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/compiler_depend.internal". [ 93%] Built target demo_unassigned_or_unused_soft_to_hard_masking make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_file_io_solution1 [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_sequence_count_characters make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/compiler_depend.internal". Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend [ 93%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake "--color=" [ 93%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_sequence_replace_as make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_example1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build [ 93%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/depend Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorials_custim_io_example1 make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/depend Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/DependInfo.cmake "--color=" make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build [ 94%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/depend Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution1 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/compiler_depend.internal". [ 94%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_reader_demo make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/depend Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution2 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution1 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/compiler_depend.internal". [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/depend make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution3 make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/alf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color=" [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution2 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_reader_demo Dependencies file "demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/compiler_depend.internal". make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend Dependencies file "apps/alf/CMakeFiles/alf.dir/alf.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/alf/CMakeFiles/alf.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target alf Consolidate compiler generated dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution4 make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/compiler_depend.internal". make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 Dependencies file "apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend Consolidate compiler generated dependencies of target casbar Consolidate compiler generated dependencies of target bisar make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/alf/CMakeFiles/alf.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color=" [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution4 make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/bisar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/casbar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color=" [ 95%] Built target alf Dependencies file "apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools/CMakeFiles/four2three.dir/compiler_depend.internal". make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend [ 95%] Built target bisar make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color=" Dependencies file "apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/compiler_depend.internal". Dependencies file "apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/compiler_depend.internal". [ 95%] Built target casbar make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend Dependencies file "apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color=" Dependencies file "apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf/CMakeFiles/gustaf.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target fx_fastq_stats Consolidate compiler generated dependencies of target gustaf Consolidate compiler generated dependencies of target fx_bam_coverage make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build Consolidate compiler generated dependencies of target four2three make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target dfi make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/dfi/CMakeFiles/dfi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/four2three.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 95%] Built target gustaf make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend [ 95%] Built target fx_fastq_stats [ 96%] Built target dfi make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake "--color=" [ 96%] Built target fx_bam_coverage make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend [ 96%] Built target four2three make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color=" make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color=" Dependencies file "apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gustaf_mate_joining Dependencies file "apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target mason_frag_sequencing make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target mason_genome Consolidate compiler generated dependencies of target mason_methylation make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target insegt make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build [ 96%] Built target gustaf_mate_joining make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target mason_frag_sequencing cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color=" make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 96%] Built target mason_genome Dependencies file "apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/compiler_depend.internal". [ 97%] Built target insegt make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend Consolidate compiler generated dependencies of target mason_materializer make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color=" make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Dependencies file "apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/compiler_depend.internal". [ 97%] Built target mason_methylation make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend Dependencies file "apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2 /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color=" [ 97%] Built target mason_materializer make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color=" Dependencies file "apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/compiler_depend.internal". Dependencies file "apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/compiler_depend.internal". Dependencies file "apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target micro_razers Consolidate compiler generated dependencies of target mason_splicing Consolidate compiler generated dependencies of target mason_variator Consolidate compiler generated dependencies of target mason_tests make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target mason_simulator make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 97%] Built target mason_variator make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color=" Dependencies file "apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/compiler_depend.internal". [ 98%] Built target mason_splicing [ 98%] Built target micro_razers make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend [ 98%] Built target mason_simulator [ 98%] Built target mason_tests make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake "--color=" Dependencies file "apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/compiler_depend.internal". Dependencies file "apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/compiler_depend.internal". Dependencies file "apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/compiler_depend.internal". Dependencies file "apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/compiler_depend.internal". Dependencies file "apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/compiler_depend.internal". Dependencies file "apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pair_align_lib Consolidate compiler generated dependencies of target bam2roi make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build Consolidate compiler generated dependencies of target roi_plot_thumbnails make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Consolidate compiler generated dependencies of target roi_feature_projection make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 98%] Built target bam2roi make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 98%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color=" [100%] Built target roi_feature_projection [100%] Built target roi_plot_thumbnails Dependencies file "apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pair_align make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/CMakeFiles/pair_align.dir/build'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target pair_align make[2]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' dh_auto_test cd obj-i686-linux-gnu && make -j5 test ARGS\+=--verbose ARGS\+=-j5 make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j5 UpdateCTestConfiguration from :/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_test_align 1: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align 1: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align 1: Test timeout computed to be: 10000000 test 2 Start 2: test_test_align_simd_global_equal_length 2: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_simd_global_equal_length 2: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align 2: Test timeout computed to be: 10000000 test 3 Start 3: test_test_align_simd_global_variable_length 3: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_simd_global_variable_length 3: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align 3: Test timeout computed to be: 10000000 test 4 Start 4: test_test_align_simd_local_equal_length 4: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_simd_local_equal_length 4: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align 4: Test timeout computed to be: 10000000 test 5 Start 5: test_test_align_simd_local_variable_length 5: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_simd_local_variable_length 5: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align 5: Test timeout computed to be: 10000000 3: TEST SUITE tests 3: SEQAN_ENABLE_DEBUG == 1 3: SEQAN_ENABLE_TESTING == 1 3: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 3: SEQAN_ASYNC_IO == 1 4: TEST SUITE tests 4: SEQAN_ENABLE_DEBUG == 1 4: SEQAN_ENABLE_TESTING == 1 4: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 4: SEQAN_ASYNC_IO == 1 2: TEST SUITE tests 2: SEQAN_ENABLE_DEBUG == 1 2: SEQAN_ENABLE_TESTING == 1 2: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 2: SEQAN_ASYNC_IO == 1 4: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 1: TEST SUITE test_align 1: SEQAN_ENABLE_DEBUG == 1 1: SEQAN_ENABLE_TESTING == 1 1: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 1: SEQAN_ASYNC_IO == 1 1: test_align_gaps_array_gaps_metafunctions OK 4: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 5: TEST SUITE tests 5: SEQAN_ENABLE_DEBUG == 1 5: SEQAN_ENABLE_TESTING == 1 5: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 5: SEQAN_ASYNC_IO == 1 4: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 4: ************************************** 4: Total Tests: 12 4: Skipped: 0 4: Errors: 0 4: ************************************** 1/397 Test #4: test_test_align_simd_local_equal_length ........................................... Passed 0.16 sec test 6 Start 6: test_test_align_extend 6: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_extend 6: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_extend 6: Test timeout computed to be: 10000000 5: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 1: test_align_gaps_array_constructor_and_source OK 1: test_align_gaps_array_gaps_set_source OK 1: test_align_gaps_array_gaps_assign_source OK 5: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 5: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 5: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 5: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 5: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 5: ************************************** 5: Total Tests: 6 5: Skipped: 0 5: Errors: 0 5: ************************************** 2/397 Test #5: test_test_align_simd_local_variable_length ........................................ Passed 0.22 sec test 7 Start 7: test_align_parallel_data_structures 7: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_parallel_data_structures 7: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel 7: Test timeout computed to be: 10000000 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 1: test_align_gaps_array_gaps_gap_operations_gaps_center OK 1: test_align_gaps_array_gaps_gap_operations_gaps_leading OK 1: test_align_gaps_array_gaps_gap_operations_gaps_trailing OK 1: test_align_gaps_array_gaps_sequence_interface_ungapped OK 1: test_align_gaps_array_gaps_sequence_interface_gaps_center OK 1: test_align_gaps_array_gaps_sequence_interface_gaps_leading OK 1: test_align_gaps_array_gaps_sequence_interface_gaps_trailing OK 1: test_align_gaps_array_gaps_iterator_interface_begin OK 1: test_align_gaps_array_gaps_iterator_interface_end OK 1: test_align_gaps_array_gaps_iterator_interface_iter OK 1: test_align_gaps_array_gaps_source_view_position_ungapped OK 1: test_align_gaps_array_gaps_source_view_position_gaps_center OK 1: test_align_gaps_array_gaps_source_view_position_gaps_leading OK 1: test_align_gaps_array_gaps_source_view_position_gaps_trailing OK 1: test_align_gaps_array_gaps_clipping_ungapped OK 1: test_align_gaps_array_gaps_clipping_gaps_center OK 1: test_align_gaps_array_gaps_clipping_gaps_leading OK 1: test_align_gaps_array_gaps_clipping_gaps_trailing OK 1: test_align_gaps_array_gaps_clear_clipping OK 1: test_align_gaps_array_gaps_copy_gaps OK 1: test_align_gaps_array_gaps_copy_clipping OK 1: test_align_gaps_array_gaps_source_is_nothing OK 3: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 7: TEST SUITE test_align_parallel_data_structures 7: SEQAN_ENABLE_DEBUG == 1 7: SEQAN_ENABLE_TESTING == 1 7: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 7: SEQAN_ASYNC_IO == 1 3: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 6: TEST SUITE test_align_extend 6: SEQAN_ENABLE_DEBUG == 1 6: SEQAN_ENABLE_TESTING == 1 6: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 6: SEQAN_ASYNC_IO == 1 3: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 3: ************************************** 3: Total Tests: 24 3: Skipped: 0 3: Errors: 0 3: ************************************** 3/397 Test #3: test_test_align_simd_global_variable_length ....................................... Passed 0.31 sec test 8 Start 8: test_test_align_parallel_interface 8: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_parallel_interface 8: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel 8: Test timeout computed to be: 10000000 1: test_align_gaps_array_gaps_clear OK 1: test_align_gaps_anchor_gaps_metafunctions OK 1: test_align_gaps_anchor_constructor_and_source OK 1: test_align_gaps_anchor_gaps_set_source OK 1: test_align_gaps_anchor_gaps_assign_source OK 7: test_align_parallel_wavefront_task_scheduler_construct OK 7: test_align_parallel_wavefront_task_scheduler_async OK 7: test_align_parallel_wavefront_alignment_scheduler_construct OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 7: test_align_parallel_wavefront_alignment_scheduler_async OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Linear_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 1: test_align_gaps_anchor_gaps_gap_operations_gaps_center OK 1: test_align_gaps_anchor_gaps_gap_operations_gaps_leading OK 1: test_align_gaps_anchor_gaps_gap_operations_gaps_trailing OK 1: test_align_gaps_anchor_gaps_sequence_interface_ungapped OK 1: test_align_gaps_anchor_gaps_sequence_interface_gaps_center OK 1: test_align_gaps_anchor_gaps_sequence_interface_gaps_leading OK 1: test_align_gaps_anchor_gaps_sequence_interface_gaps_trailing OK 1: test_align_gaps_anchor_gaps_iterator_interface_begin OK 1: test_align_gaps_anchor_gaps_iterator_interface_end OK 1: test_align_gaps_anchor_gaps_iterator_interface_iter OK 1: test_align_gaps_anchor_gaps_source_view_position_ungapped OK 1: test_align_gaps_anchor_gaps_source_view_position_gaps_center OK 1: test_align_gaps_anchor_gaps_source_view_position_gaps_leading OK 1: test_align_gaps_anchor_gaps_source_view_position_gaps_trailing OK 1: test_align_gaps_anchor_gaps_clipping_ungapped OK 1: test_align_gaps_anchor_gaps_clipping_gaps_center OK 1: test_align_gaps_anchor_gaps_clipping_gaps_leading OK 1: test_align_gaps_anchor_gaps_clipping_gaps_trailing OK 1: test_align_gaps_anchor_gaps_clear_clipping OK 1: test_align_gaps_anchor_gaps_copy_gaps OK 1: test_align_gaps_anchor_gaps_copy_clipping OK 1: test_align_gaps_anchor_gaps_clear OK 1: test_align_fragment OK 1: test_align_gaps_iterator_array_metafunctions OK 1: test_align_gaps_iterator_array_trivial_iterator_array_functions OK 1: test_align_gaps_iterator_array_rooted_random_access_iterator_array_functions OK 1: test_align_gaps_iterator_array_movement OK 1: test_align_gaps_iterator_array_relations OK 1: test_align_gaps_iterator_array_pointer_arithmetic OK 1: test_align_gaps_iterator_array_forward_iteration OK 1: test_align_gaps_iterator_array_reverse_iteration OK 1: test_align_gaps_iterator_array_count_gaps_count_characters_is_gap OK 1: test_align_gaps_iterator_array_clipped_count_gaps_count_characters_is_gap OK 1: test_align_gaps_iterator_array_gap_operations_center OK 1: test_align_gaps_iterator_array_gap_operations_leading OK 1: test_align_gaps_iterator_array_gap_operations_trailing OK 1: test_align_gaps_iterator_anchor_metafunctions OK 1: test_align_gaps_iterator_anchor_trivial_iterator_anchor_functions OK 1: test_align_gaps_iterator_anchor_rooted_random_access_iterator_anchor_functions OK 1: test_align_gaps_iterator_anchor_movement OK 1: test_align_gaps_iterator_anchor_relations OK 1: test_align_gaps_iterator_anchor_pointer_arithmetic OK 1: test_align_gaps_iterator_anchor_forward_iteration OK 1: test_align_gaps_iterator_anchor_reverse_iteration OK 1: test_align_gaps_iterator_anchor_count_gaps_count_characters_is_gap OK 1: test_align_gaps_iterator_anchor_clipped_count_gaps_count_characters_is_gap OK 1: test_align_gaps_iterator_anchor_gap_operations_center OK 1: test_align_gaps_iterator_anchor_gap_operations_leading OK 1: test_align_gaps_iterator_anchor_gap_operations_trailing OK 1: test_alignment_dp_profile_is_global_alignment OK 1: test_alignment_dp_profile_is_local_alignment OK 1: test_alignment_dp_profile_is_traceback_enabled OK 1: test_alignment_dp_profile_is_free_end_gaps OK 1: test_dp_band_on_constructor OK 1: test_dp_band_on_lower_diagonal OK 1: test_dp_band_on_upper_diagonal OK 1: test_dp_band_on_set_lower_diagonal OK 1: test_dp_band_on_set_upper_diagonal OK 1: test_dp_band_off_band_size OK 1: test_dp_band_on_band_size OK 1: test_dp_cell_value OK 1: test_dp_cell_reference OK 1: test_dp_cell_default_infinity OK 1: test_dp_cell_linear_constructor OK 1: test_dp_cell_linear_copy_constructor OK 1: test_dp_cell_linear_assignment OK 1: test_dp_cell_linear_score OK 1: test_dp_cell_affine_constructor OK 1: test_dp_cell_affine_copy_constructor OK 1: test_dp_cell_affine_assignment OK 1: test_dp_cell_affine_score OK 1: test_dp_cell_affine_vertical_score OK 1: test_dp_cell_affine_horizontal_score OK 1: test_dp_cell_dynamic_constructor OK 1: test_dp_cell_dynamic_copy_constructor OK 1: test_dp_cell_dynamic_assignment OK 1: test_dp_cell_dynamic_score OK 1: test_alignment_dp_matrix_metafunction_data_host OK 1: test_alignment_dp_matrix_metafunction_size_arr OK 1: test_alignment_dp_matrix_data_host OK 1: test_alignment_dp_matrix_data_lengths OK 1: test_alignment_dp_matrix_data_factors OK 1: test_alignment_dp_matrix_check_dimension OK 1: test_alignment_dp_matrix_clear OK 1: test_alignment_dp_matrix_host OK 1: test_alignment_dp_matrix_set_host OK 1: test_alignment_dp_matrix_begin_standard OK 1: test_alignment_dp_matrix_begin_rooted OK 1: test_alignment_dp_matrix_end_standard OK 1: test_alignment_dp_matrix_end_rooted OK 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 7: test_align_parallel_wavefront_alignment_scheduler_async_with_exception OK 7: test_align_parallel_intermediate_dp_result_construct OK 7: test_align_parallel_intermediate_dp_result_update_max OK 7: test_align_parallel_intermediate_dp_result_clear OK 7: test_align_parallel_wavefront_alignment_thread_local_storage_construt OK 7: test_align_parallel_wavefront_alignment_thread_local_storage_cache OK 7: test_align_parallel_wavefront_alignment_thread_local_storage_intermediate OK 7: ************************************** 7: Total Tests: 11 7: Skipped: 0 7: Errors: 0 7: ************************************** 4/397 Test #7: test_align_parallel_data_structures ............................................... Passed 0.13 sec test 9 Start 9: test_test_align_parallel_algorithm 9: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_parallel_algorithm 9: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_parallel 9: Test timeout computed to be: 10000000 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 6: test_align_extend_simple OK 6: test_align_extend_simple_infixes_recomp OK 6: test_align_extend_banded OK 6: test_align_extend_xdrop OK 6: test_align_extend_xdrop_banded OK 6: test_align_extend_semiglobal OK 6: ************************************** 6: Total Tests: 6 6: Skipped: 0 6: Errors: 0 6: ************************************** 5/397 Test #6: test_test_align_extend ............................................................ Passed 0.18 sec test 10 Start 10: test_test_align_profile 10: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_profile 10: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_profile 10: Test timeout computed to be: 10000000 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix_Align type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Affine_Score type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: SimdAlignTestCommon_Dynamic_Score_Matrix type parameter std::tuple >, seqan::Tag, seqan::Tag > OK 2: ************************************** 2: Total Tests: 48 2: Skipped: 0 2: Errors: 0 2: ************************************** 1: test_alignment_dp_matrix_full_constructor OK 1: test_alignment_dp_matrix_full_copy_constructor OK 1: test_alignment_dp_matrix_full_assigment OK 1: test_alignment_dp_matrix_full_metafunction_value OK 1: test_alignment_dp_matrix_full_metafunction_reference OK 1: test_alignment_dp_matrix_full_metafunction_getvalue OK 1: test_alignment_dp_matrix_full_metafunction_position OK 1: test_alignment_dp_matrix_full_metafunction_size OK 1: test_alignment_dp_matrix_full_metafunction_host OK 1: test_alignment_dp_matrix_full_metafunction_iterator_standard OK 1: test_alignment_dp_matrix_full_metafunction_iterator_rooted OK 1: test_alignment_dp_matrix_full_resize OK 1: test_alignment_dp_matrix_full_resize_with_value OK 1: test_alignment_dp_matrix_full_value OK 1: test_alignment_dp_matrix_full_value_with_coordinates OK 1: test_alignment_dp_matrix_full_set_length OK 1: test_alignment_dp_matrix_full_length_dimension OK 1: test_alignment_dp_matrix_full_length OK 1: test_alignment_dp_matrix_full_empty OK 1: test_alignment_dp_matrix_full_coordinate OK 1: test_alignment_dp_matrix_sparse_constructor OK 1: test_alignment_dp_matrix_sparse_copy_constructor OK 1: test_alignment_dp_matrix_sparse_assigment OK 1: test_alignment_dp_matrix_sparse_metafunction_value OK 1: test_alignment_dp_matrix_sparse_metafunction_reference OK 1: test_alignment_dp_matrix_sparse_metafunction_getvalue OK 1: test_alignment_dp_matrix_sparse_metafunction_position OK 1: test_alignment_dp_matrix_sparse_metafunction_size OK 1: test_alignment_dp_matrix_sparse_metafunction_host OK 1: test_alignment_dp_matrix_sparse_metafunction_iterator_standard OK 1: test_alignment_dp_matrix_sparse_metafunction_iterator_rooted OK 1: test_alignment_dp_matrix_sparse_resize OK 1: test_alignment_dp_matrix_sparse_resize_with_value OK 1: test_alignment_dp_matrix_sparse_value OK 1: test_alignment_dp_matrix_sparse_value_with_coordinates OK 1: test_alignment_dp_matrix_sparse_set_length OK 1: test_alignment_dp_matrix_sparse_length_dimension OK 1: test_alignment_dp_matrix_sparse_length OK 1: test_alignment_dp_matrix_sparse_empty OK 1: test_alignment_dp_matrix_sparse_coordinate OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_init_unbanded OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_init_banded OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_go_next_cell OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_assign_value OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_value OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_previous_cell_horizontal OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_coordinate OK 1: test_alignment_dp_matrix_navigator_score_matrix_full_container OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_init_unbanded OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_init_banded OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_go_next OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_assign_value OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_value OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_previous_cell_horizontal OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_coordinate OK 1: test_alignment_dp_matrix_navigator_score_matrix_sparse_container OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_init_unbanded OK 1: test_alignment_dp_matrix_navigator_trace_matrix_disabled_init_unbanded OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_init_banded OK 1: test_alignment_dp_matrix_navigator_trace_matrix_disabled_init_banded OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_go_next OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_assign_value OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_value OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_coordinate OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_container OK 1: test_alignment_dp_matrix_navigator_trace_matrix_enabled_to_global_position OK 1: test_dp_formula_trace_global_linear_diagonal_direction OK 1: test_dp_formula_trace_global_linear_horizontal_direction OK 1: test_dp_formula_trace_global_linear_vertical_direction OK 1: test_dp_formula_trace_global_linear_upper_band_direction OK 1: test_dp_formula_trace_global_linear_lower_band_direction OK 1: test_dp_formula_trace_global_linear_all_direction OK 1: test_dp_formula_trace_global_affine_diagonal_direction OK 1: test_dp_formula_trace_global_affine_horizontal_direction OK 1: test_dp_formula_trace_global_affine_vertical_direction OK 1: test_dp_formula_trace_global_affine_upper_band_direction OK 1: test_dp_formula_trace_global_affine_lower_band_direction OK 1: test_dp_formula_trace_global_affine_all_direction OK 1: test_dp_formula_trace_global_dynamic_diagonal_direction OK 1: test_dp_formula_trace_global_dynamic_horizontal_direction OK 1: test_dp_formula_trace_global_dynamic_vertical_direction OK 1: test_dp_formula_trace_global_dynamic_upper_band_direction OK 1: test_dp_formula_trace_global_dynamic_lower_band_direction OK 1: test_dp_formula_trace_global_dynamic_all_direction OK 1: test_dp_formula_trace_local_linear_diagonal_direction OK 1: test_dp_formula_trace_local_linear_horizontal_direction OK 1: test_dp_formula_trace_local_linear_vertical_direction OK 1: test_dp_formula_trace_local_linear_upper_band_direction OK 1: test_dp_formula_trace_local_linear_lower_band_direction OK 1: test_dp_formula_trace_local_linear_all_direction OK 1: test_dp_formula_trace_local_affine_diagonal_direction OK 1: test_dp_formula_trace_local_affine_horizontal_direction OK 1: test_dp_formula_trace_local_affine_vertical_direction OK 1: test_dp_formula_trace_local_affine_upper_band_direction OK 1: test_dp_formula_trace_local_affine_lower_band_direction OK 1: test_dp_formula_trace_local_affine_all_direction OK 1: test_dp_formula_notrace_diagonal_direction OK 1: test_dp_formula_notrace_horizontal_direction OK 1: test_dp_formula_notrace_vertical_direction OK 1: test_dp_formula_notrace_upper_band_direction OK 1: test_dp_formula_notrace_lower_band_direction OK 1: test_dp_formula_notrace_all_direction OK 1: test_alignment_traceback_tracesegment_constructor OK 1: test_alignment_traceback_tracesegment_assignment OK 1: test_alignment_traceback_tracesegment_position OK 1: test_alignment_traceback_tracesegment_size OK 1: test_alignment_traceback_tracesegment_get_begin_horizontal OK 1: test_alignment_traceback_tracesegment_get_begin_vertical OK 1: test_alignment_traceback_tracesegment_get_end_horizontal OK 1: test_alignment_traceback_tracesegment_get_end_vertical OK 1: test_alignment_traceback_tracesegment_translate_trace_value OK 1: test_alignment_traceback_tracesegment_operator_stream OK 1: test_alignment_traceback_tracesegment_operator_equal OK 1: test_alignment_traceback_tracesegment_operator_unequal OK 1: test_alignment_traceback_tracesegment_record_segment OK 1: test_align2_trace_adaptor_trace_segment OK 1: test_align2_trace_adaptor_record_trace_segment OK 1: test_align2_trace_adaptor_adapt_file OK 1: test_align2_trace_adaptor_adapt_align OK 1: test_align2_trace_adaptor_adapt_fragments OK 1: test_align2_trace_adaptor_adapt_alignment_graph OK 8: TEST SUITE tests 8: SEQAN_ENABLE_DEBUG == 1 8: SEQAN_ENABLE_TESTING == 1 8: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 8: SEQAN_ASYNC_IO == 1 9: TEST SUITE test_align_parallel_algorithm 9: SEQAN_ENABLE_DEBUG == 1 9: SEQAN_ENABLE_TESTING == 1 9: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 9: SEQAN_ASYNC_IO == 1 9: test_align_parallel_wavefront_single_global_alignment OK 6/397 Test #2: test_test_align_simd_global_equal_length .......................................... Passed 0.41 sec test 11 Start 11: test_test_align_split 11: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_align_split 11: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/align_split 11: Test timeout computed to be: 10000000 1: test_align2_traceback_linear_unbanded_alignment OK 1: test_align2_traceback_linear_normal_banded_alignment OK 1: test_align2_traceback_linear_small_banded_alignment OK 1: test_align2_traceback_linear_wide_banded_alignment OK 1: test_align2_traceback_affine OK 1: test_align2_traceback_gaps_left_linear_gaps OK 1: test_align2_traceback_gaps_right_linear_gaps OK 1: test_align2_traceback_gaps_left_affine_gaps OK 1: test_align2_traceback_gaps_right_affine_gaps OK 1: test_alignment_algorithms_band_position_case1 OK 1: test_alignment_algorithms_band_position_case2 OK 1: test_alignment_algorithms_band_position_case3 OK 1: test_alignment_algorithms_band_position_case4 OK 1: test_alignment_algorithms_band_position_case5 OK 1: test_alignment_algorithms_band_position_case6 OK 1: test_alignment_algorithms_band_position_case7 OK 1: test_alignment_algorithms_band_position_case8 OK 1: test_alignment_algorithms_band_position_case9 OK 1: test_alignment_algorithms_band_position_case10 OK 1: test_alignment_algorithms_band_position_case11 OK 1: test_alignment_algorithms_band_position_case12 OK 1: test_alignment_algorithms_band_position_case13 OK 1: test_alignment_algorithms_band_position_case14 OK 1: test_alignment_algorithms_band_position_case15 OK 1: test_alignment_algorithms_band_position_case16 OK 1: test_alignment_algorithms_band_position_case17 OK 1: test_alignment_algorithms_band_position_case18 OK 1: test_alignment_algorithms_band_position_case19 OK 1: test_alignment_algorithms_band_position_case20 OK 1: test_alignment_algorithms_band_position_case21 OK 1: test_alignment_algorithms_band_position_case22 OK 1: test_alignment_algorithms_band_position_case23 OK 1: test_alignment_algorithms_band_position_case24 OK 1: test_alignment_algorithms_band_position_case25 OK 1: test_alignment_algorithms_band_position_case26 OK 1: test_alignment_algorithms_band_position_case27 OK 1: test_alignment_algorithms_band_position_case28 OK 1: test_alignment_algorithms_band_position_case29 OK 1: test_alignment_algorithms_band_position_case30 OK 1: test_alignment_algorithms_band_position_case31 OK 1: test_alignment_algorithms_align_gaps_global_linear OK 1: test_alignment_algorithms_gaps_gaps_global_linear OK 8: ParallelAlignInterfaceTestCommon_Global_Score type parameter std::tuple, seqan::Tag > > OK 10: TEST SUITE test_align_profile 10: SEQAN_ENABLE_DEBUG == 1 10: SEQAN_ENABLE_TESTING == 1 10: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 10: SEQAN_ASYNC_IO == 1 10: test_align_profile_profile_test OK 10: test_align_profile_align_profile_sequence OK 10: test_align_profile_align_profile_sequence_frac OK 10: test_align_profile_add_to_profile OK 10: test_align_profile_add_to_profile_multiple OK 10: test_align_profile_add_to_profile_banded OK 10: test_align_profile_add_to_profile_multiple_banded OK 10: ************************************** 10: Total Tests: 7 10: Skipped: 0 10: Errors: 0 10: ************************************** 7/397 Test #10: test_test_align_profile ........................................................... Passed 0.10 sec test 12 Start 12: test_test_alignment_free 12: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_alignment_free 12: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/alignment_free 12: Test timeout computed to be: 10000000 1: test_alignment_algorithms_graph_gaps_global_linear OK 1: test_alignment_algorithms_fragments_gaps_global_linear OK 1: test_align_global_alignment_shorter_interfaces_linear OK 1: test_alignment_algorithms_score_global_linear OK 1: test_alignment_algorithms_align_gaps_global_affine OK 1: test_alignment_algorithms_gaps_gaps_global_affine OK 1: test_alignment_algorithms_graph_gaps_global_affine OK 1: test_alignment_algorithms_fragments_gaps_global_affine OK 1: test_align_global_alignment_shorter_interfaces_affine OK 1: test_alignment_algorithms_score_global_affine OK 1: test_alignment_algorithms_align_gaps_overlap_linear OK 1: test_alignment_algorithms_gaps_gaps_overlap_linear OK 1: test_alignment_algorithms_graph_gaps_overlap_linear OK 1: test_alignment_algorithms_fragments_gaps_overlap_linear OK 1: test_alignment_algorithms_score_overlap_linear OK 1: test_alignment_algorithms_align_gaps_overlap_affine OK 8: ParallelAlignInterfaceTestCommon_Global_Score type parameter std::tuple, seqan::Tag > > OK 8: ParallelAlignInterfaceTestCommon_Global_Score type parameter std::tuple, seqan::Tag > > OK 11: TEST SUITE test_align_split 11: SEQAN_ENABLE_DEBUG == 1 11: SEQAN_ENABLE_TESTING == 1 11: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 11: SEQAN_ASYNC_IO == 1 1: test_alignment_algorithms_gaps_gaps_overlap_affine OK 1: test_alignment_algorithms_graph_gaps_overlap_affine OK 1: test_alignment_algorithms_fragments_gaps_overlap_affine OK 1: test_alignment_algorithms_score_overlap_affine OK 1: test_alignment_algorithms_align_gaps_semi_global_linear OK 1: test_alignment_algorithms_gaps_gaps_semi_global_linear OK 1: test_alignment_algorithms_graph_gaps_semi_global_linear OK 1: test_alignment_algorithms_fragments_gaps_semi_global_linear OK 1: test_alignment_algorithms_score_semi_global_linear OK 1: test_alignment_algorithms_align_gaps_semi_global_affine OK 1: test_alignment_algorithms_gaps_gaps_semi_global_affine OK 1: test_alignment_algorithms_graph_gaps_semi_global_affine OK 1: test_alignment_algorithms_fragments_gaps_semi_global_affine OK 1: test_alignment_algorithms_score_semi_global_affine OK 11: test_align_split_overlapping_reads_in_reference_align_unbanded OK 11: test_align_split_overlapping_contigs_in_reference_align_unbanded OK 11: test_align_split_insertion_in_reference_align_unbanded OK 11: test_align_split_overlapping_reads_in_reference_gaps_unbanded OK 11: test_align_split_overlapping_contigs_in_reference_gaps_unbanded OK 11: test_align_split_insertion_in_reference_gaps_unbanded OK 11: test_align_split_overlapping_reads_in_reference_align_banded OK 11: test_align_split_overlapping_contigs_in_reference_align_banded OK 11: test_align_split_insertion_in_reference_align_banded OK 11: test_align_split_overlapping_reads_in_reference_gaps_banded OK 11: test_align_split_overlapping_contigs_in_reference_gaps_banded OK 11: test_align_split_insertion_in_reference_gaps_banded OK 12: TEST SUITE test_alignment_free 12: SEQAN_ENABLE_DEBUG == 1 12: SEQAN_ENABLE_TESTING == 1 12: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 12: SEQAN_ASYNC_IO == 1 8: ParallelAlignInterfaceTestCommon_Global_Score type parameter std::tuple >, seqan::Tag > > OK 8: ParallelAlignInterfaceTestCommon_Semi_Global_Score type parameter std::tuple, seqan::Tag > > OK 11: test_align_split_issue_1679 OK 11: ************************************** 11: Total Tests: 13 11: Skipped: 0 11: Errors: 0 11: ************************************** 8/397 Test #11: test_test_align_split ............................................................. Passed 0.07 sec test 13 Start 13: test_test_arg_parse 13: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_arg_parse 13: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse 13: Test timeout computed to be: 10000000 1: test_alignment_algorithms_global_different_container OK 1: test_alignment_algorithms_align_local_linear OK 1: test_alignment_algorithms_gaps_local_linear OK 1: test_alignment_algorithms_graph_local_linear OK 1: test_alignment_algorithms_fragments_local_linear OK 1: test_alignment_algorithms_align_local_affine OK 1: test_alignment_algorithms_gaps_local_affine OK 1: test_alignment_algorithms_graph_local_affine OK 1: test_alignment_algorithms_fragments_local_affine OK 1: test_alignment_algorithms_global_dynamic_cost OK 1: test_alignment_algorithms_local_dynamic_cost OK 1: test_align_local_alignment_enumeration_align OK 1: test_align_local_alignment_enumeration_gaps OK 1: test_align_local_alignment_enumeration_fragment OK 1: test_alignment_algorithms_align_global_linear_banded OK 1: test_alignment_algorithms_gaps_global_linear_banded OK 1: test_alignment_algorithms_graph_global_linear_banded OK 1: test_alignment_algorithms_fragments_global_linear_banded OK 1: test_alignment_algorithms_align_global_affine_banded OK 1: test_alignment_algorithms_gaps_global_affine_banded OK 1: test_alignment_algorithms_graph_global_affine_banded OK 1: test_alignment_algorithms_fragments_global_affine_banded OK 1: test_alignment_algorithms_align_overlap_linear_banded OK 1: test_alignment_algorithms_gaps_overlap_linear_banded OK 1: test_alignment_algorithms_graph_overlap_linear_banded OK 1: test_alignment_algorithms_fragments_overlap_linear_banded OK 1: test_alignment_algorithms_align_overlap_affine_banded OK 1: test_alignment_algorithms_gaps_overlap_affine_banded OK 1: test_alignment_algorithms_graph_overlap_affine_banded OK 1: test_alignment_algorithms_fragments_overlap_affine_banded OK 1: test_alignment_algorithms_align_semi_global_linear_banded OK 1: test_alignment_algorithms_gaps_semi_global_linear_banded OK 1: test_alignment_algorithms_graph_semi_global_linear_banded OK 1: test_alignment_algorithms_fragments_semi_global_linear_banded OK 1: test_alignment_algorithms_align_semi_global_affine_banded OK 1: test_alignment_algorithms_gaps_semi_global_affine_banded OK 1: test_alignment_algorithms_graph_semi_global_affine_banded OK 1: test_alignment_algorithms_fragments_semi_global_affine_banded OK 1: test_align_global_alignment_banded_shorter_interfaces_linear OK 1: test_align_global_alignment_banded_shorter_interfaces_affine OK 1: test_alignment_algorithms_global_banded_different_container OK 1: test_alignment_algorithms_align_local_linear_banded OK 1: test_alignment_algorithms_gaps_local_linear_banded OK 1: test_alignment_algorithms_graph_local_linear_banded OK 1: test_alignment_algorithms_fragments_local_linear_banded OK 1: test_alignment_algorithms_align_local_affine_banded OK 1: test_alignment_algorithms_gaps_local_affine_banded OK 1: test_alignment_algorithms_graph_local_affine_banded OK 1: test_alignment_algorithms_fragments_local_affine_banded OK 1: test_alignment_algorithms_global_dynamic_cost_banded OK 1: test_alignment_algorithms_local_dynamic_cost_banded OK 1: test_align_local_alignment_enumeration_banded_align OK 1: test_align_local_alignment_enumeration_banded_gaps OK 1: test_align_local_alignment_enumeration_banded_fragment OK 1: test_align_global_alignment_hirschberg_align OK 1: test_align_global_alignment_hirschberg_gaps OK 1: test_align_global_alignment_hirschberg_fragments OK 1: test_align_global_alignment_hirschberg_graph OK 1: test_align_global_alignment_myers_hirschberg_align OK 1: test_align_global_alignment_myers_hirschberg_gaps OK 1: test_align_global_alignment_myers_hirschberg_fragments OK 1: test_align_global_alignment_myers_hirschberg_graph OK 1: test_align_global_alignment_score_hirschberg OK 1: test_align_global_alignment_score_myers OK 1: test_align_global_alignment_score_myers_hirschberg OK 1: test_align_global_alignment_hirschberg_single_character OK 1: test_align_integrate_align OK 1: test_align_integrate_align_infix_of_infix OK 1: test_align_stream_gaps_write OK 1: test_align_stream_gaps_stream OK 1: test_align_stream_align_write OK 1: test_align_stream_align_stream OK 1: test_align_compute_alignment_stats OK 1: ************************************** 1: Total Tests: 387 1: Skipped: 0 1: Errors: 0 1: ************************************** 12: test_alignment_free_d2_dna OK 12: test_alignment_free_d2_dna5 OK 12: test_alignment_free_d2star_dna5 OK 12: test_alignment_free_d2z_dna5 OK 8: ParallelAlignInterfaceTestCommon_Semi_Global_Score type parameter std::tuple, seqan::Tag > > OK 8: ParallelAlignInterfaceTestCommon_Semi_Global_Score type parameter std::tuple, seqan::Tag > > OK 9/397 Test #1: test_test_align ................................................................... Passed 0.52 sec test 14 Start 14: test_test_arg_parse_version_check 14: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_arg_parse_version_check 14: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/arg_parse 14: Test timeout computed to be: 10000000 8: ParallelAlignInterfaceTestCommon_Semi_Global_Score type parameter std::tuple >, seqan::Tag > > OK 8: ParallelAlignInterfaceTestCommon_Local_Score type parameter std::tuple, seqan::Tag > > OK 8: ParallelAlignInterfaceTestCommon_Local_Score type parameter std::tuple, seqan::Tag > > OK 13: TEST SUITE test_arg_parse 13: SEQAN_ENABLE_DEBUG == 1 13: SEQAN_ENABLE_TESTING == 1 13: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 13: SEQAN_ASYNC_IO == 1 8: ParallelAlignInterfaceTestCommon_Local_Score type parameter std::tuple, seqan::Tag > > OK 8: ParallelAlignInterfaceTestCommon_Local_Score type parameter std::tuple >, seqan::Tag > > OK 8: ************************************** 8: Total Tests: 12 8: Skipped: 0 8: Errors: 0 8: ************************************** 10/397 Test #8: test_test_align_parallel_interface ................................................ Passed 0.25 sec test 15 Start 15: test_test_bam_io 15: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_bam_io 15: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bam_io 15: Test timeout computed to be: 10000000 9: test_align_parallel_wavefront_multiple_global_alignment OK 9: ************************************** 9: Total Tests: 2 9: Skipped: 0 9: Errors: 0 9: ************************************** 11/397 Test #9: test_test_align_parallel_algorithm ................................................ Passed 0.23 sec test 16 Start 16: test_test_basic_exception 16: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_exception 16: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 16: Test timeout computed to be: 10000000 13: test_unset_value OK 13: test_unset_values OK 13: test_int_short_argument OK 13: test_int_long_argument OK 13: test_non_int_argument OK 13: test_int64_short_argument OK 13: test_int64_long_argument OK 13: test_non_int64_argument OK 13: test_double_short_argument OK 13: test_double_long_argument OK 13: test_non_double_argument OK 13: test_double_scientific_notation OK 13: test_string_short_argument OK 13: test_string_long_argument OK 13: test_string_missing_argument OK 13: test_string_list OK 13: test_min_max_double_values_in_range OK 13: test_min_max_double_values_to_small OK 13: test_min_max_double_values_to_big OK 13: test_min_max_int_values_in_range OK 13: test_min_max_int_values_to_small OK 13: test_min_max_int_values_to_big OK 13: test_allowed_values_contained OK 13: test_allowed_values_not_contained OK 13: test_input_file_short OK 13: test_input_file_long OK 13: test_input_file_missing OK 13: test_input_file_invalid_type OK 13: test_input_file_valid_type OK 13: test_input_file_extension OK 13: test_input_file_auto_file_ext_option OK 13: test_output_file_short OK 13: test_output_file_long OK 13: test_output_file_missing OK 13: test_output_file_invalid_type OK 13: test_output_file_valid_type OK 13: test_output_file_extension OK 13: test_output_file_extension_targz OK 13: test_output_file_explicit_extension_valid OK 13: test_output_file_explicit_extension_invalid OK 13: test_argument_string OK 13: test_argument_not_all_set OK 13: test_argument_double OK 13: test_argument_not_a_double OK 13: test_argument_auto_file_ext_option OK 13: test_int_list_option OK 13: test_double_list_option OK 13: test_double_list_option_not_enough_arguments OK 13: test_boolean_argument_on OK 13: test_boolean_argument_off OK 13: test_boolean_flags OK 13: test_combined_boolean_flags OK 13: test_long_short_flag_name OK 13: test_argument_string_type OK 13: test_argument_int_type OK 13: test_argument_int64_type OK 13: test_argument_double_type OK 13: test_argument_inputfile_type OK 13: test_argument_outputfile_type OK 13: test_argument_inputprefix_type OK 13: test_argument_outputprefix_type OK 13: test_argument_label OK 13: test_argument_invalid_cast OK 13: test_argument_min_max_boundaries OK 13: test_argument_valid_values OK 13: test_argument_valid_values_directories OK 13: test_argument_parser OK 13: test_parse_non_const_cstring OK 13: test_default_value OK 13: test_isDouble OK 13: test_isInt OK 12: test_alignment_free_n2_dna5 OK 12: test_alignment_free_calculate_probability OK 12: test_alignment_free_calculate_variance OK 12: test_alignment_free_calculate_covariance OK 16: TEST SUITE test_basic_exception 16: SEQAN_ENABLE_DEBUG == 1 16: SEQAN_ENABLE_TESTING == 1 16: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 16: SEQAN_ASYNC_IO == 1 16: test_basic_exception_try_catch OK 16: test_basic_exception_bad_alloc OK 16: test_basic_exception_runtime_error OK 16: ************************************** 16: Total Tests: 3 16: Skipped: 0 16: Errors: 0 16: ************************************** 12/397 Test #16: test_test_basic_exception ......................................................... Passed 0.03 sec test 17 Start 17: test_test_basic_metaprogramming 17: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_metaprogramming 17: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 17: Test timeout computed to be: 10000000 13: test_arg_parse_ctd_support OK 13: ************************************** 13: Total Tests: 72 13: Skipped: 0 13: Errors: 0 13: ************************************** 13/397 Test #13: test_test_arg_parse ............................................................... Passed 0.13 sec test 18 Start 18: test_test_basic_fundamental 18: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_fundamental 18: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 18: Test timeout computed to be: 10000000 17: TEST SUITE test_basic_metaprogramming 17: SEQAN_ENABLE_DEBUG == 1 17: SEQAN_ENABLE_TESTING == 1 17: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 17: SEQAN_ASYNC_IO == 1 17: test_basic_metaprogramming_logic_bool_type OK 17: test_basic_metaprogramming_logic_eval OK 17: test_basic_metaprogramming_logic_or OK 17: test_basic_metaprogramming_logic_or_c OK 17: test_basic_metaprogramming_logic_and OK 17: test_basic_metaprogramming_logic_and_c OK 17: test_basic_metaprogramming_logic_if OK 17: test_basic_metaprogramming_logic_if_c OK 17: test_basic_metaprogramming_control_loop_reverse OK 17: test_basic_metaprogramming_control_loop OK 17: test_basic_metaprogramming_control_switch OK 17: test_basic_metaprogramming_control_if OK 17: test_basic_metaprogramming_math_log2 OK 17: test_basic_metaprogramming_math_log2_floor OK 17: test_basic_metaprogramming_math_log2_power OK 17: test_basic_metaprogramming_type_same_type OK 17: test_basic_metaprogramming_type_make_signed OK 17: test_basic_metaprogramming_type_make_unsigned OK 17: test_basic_metaprogramming_type_remove_reference OK 17: test_basic_metaprogramming_type_remove_const OK 17: test_basic_metaprogramming_type_is_const OK 17: test_basic_metaprogramming_type_class_identifier OK 17: test_basic_metaprogramming_enable_if_disable_if OK 17: test_basic_metaprogramming_enable_if2_disable_if2 OK 17: ************************************** 17: Total Tests: 24 17: Skipped: 0 17: Errors: 0 17: ************************************** 14/397 Test #17: test_test_basic_metaprogramming ................................................... Passed 0.02 sec test 19 Start 19: test_test_basic_concept 19: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_concept 19: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 19: Test timeout computed to be: 10000000 18: TEST SUITE test_basic_metaprogramming 18: SEQAN_ENABLE_DEBUG == 1 18: SEQAN_ENABLE_TESTING == 1 18: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 18: SEQAN_ASYNC_IO == 1 18: test_basic_fundamental_tags_tag OK 18: test_basic_fundamental_tags_tags OK 18: test_basic_fundamental_tags_tag_list OK 18: test_basic_fundamental_tags_tag_selector OK 18: test_basic_fundamental_tags_length_tag_list OK 18: test_basic_fundamental_metafunctions_value OK 18: test_basic_fundamental_metafunctions_get_value OK 18: test_basic_fundamental_metafunctions_reference OK 18: test_basic_fundamental_metafunctions_size OK 18: test_basic_fundamental_metafunctions_difference OK 18: test_basic_fundamental_metafunctions_position OK 18: test_basic_fundamental_metafunctions_spec OK 18: test_basic_fundamental_metafunctions_deepest_spec OK 18: test_basic_fundamental_transport_assign OK 18: test_basic_fundamental_transport_move OK 18: test_basic_fundamental_transport_set OK 18: test_basic_fundamental_comparison_compare_type OK 18: test_basic_fundamental_convert_metafunction OK 18: test_basic_fundamental_convert_function OK 18: test_basic_array_construct_destruct_metafunction_is_simple OK 18: test_basic_array_construct_destruct_construct_value_pointer OK 18: test_basic_array_construct_destruct_destruct_value_pointer OK 18: test_basic_array_construct_destruct_array_construct_pointer OK 18: test_basic_array_construct_destruct_array_construct_copy_pointer OK 18: test_basic_array_construct_destruct_array_construct_move_pointer OK 18: test_basic_array_construct_destruct_array_destruct_pointer OK 18: test_basic_array_construct_destruct_array_fill_pointer OK 18: test_basic_array_construct_destruct_array_copy_forward_pointer OK 18: test_basic_array_construct_destruct_array_copy_backward_pointer OK 18: test_basic_array_construct_destruct_array_copy_pointer OK 18: test_basic_array_construct_destruct_array_move_forward_pointer OK 18: test_basic_array_construct_destruct_array_move_backward_pointer OK 18: test_basic_array_construct_destruct_array_move_pointer OK 18: test_basic_array_construct_destruct_array_clear_space_pointer OK 18: ************************************** 18: Total Tests: 34 18: Skipped: 0 18: Errors: 0 18: ************************************** 15/397 Test #18: test_test_basic_fundamental ....................................................... Passed 0.03 sec test 20 Start 20: test_test_basic_alphabet 20: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_alphabet 20: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 20: Test timeout computed to be: 10000000 15: TEST SUITE test_bam_io 15: SEQAN_ENABLE_DEBUG == 1 15: SEQAN_ENABLE_TESTING == 1 15: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 15: SEQAN_ASYNC_IO == 1 15: test_bam_io_bam_alignment_record_class OK 15: test_bam_io_bam_alignment_record_has_flag_multiple OK 15: test_bam_io_bam_alignment_record_has_flag_unmapped OK 15: test_bam_io_bam_alignment_record_has_flag_next_unmapped OK 15: test_bam_io_bam_alignment_record_has_flag_rc OK 15: test_bam_io_bam_alignment_record_has_flag_next_rc OK 15: test_bam_io_bam_alignment_record_has_flag_first OK 15: test_bam_io_bam_alignment_record_has_flag_last OK 15: test_bam_io_bam_alignment_record_has_flag_secondary OK 15: test_bam_io_bam_alignment_record_has_flag_qc_no_pass OK 15: test_bam_io_bam_alignment_record_has_flag_duplicate OK 15: test_bam_io_bam_alignment_record_has_flag_supplementary OK 15: test_bam_io_bam_header_class OK 15: test_bam_io_bam_header_typedefs OK 15: test_bam_io_bam_header_record_class OK 15: test_bam_io_bam_header_record_typedefs OK 19: TEST SUITE test_basic_concept 19: SEQAN_ENABLE_DEBUG == 1 19: SEQAN_ENABLE_TESTING == 1 19: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 19: SEQAN_ASYNC_IO == 1 19: test_basic_concepts_concept_impl OK 19: test_basic_concepts_concept_refine OK 19: test_basic_concepts_move_construtible_concept OK 19: ************************************** 19: Total Tests: 3 19: Skipped: 0 19: Errors: 0 19: ************************************** 16/397 Test #19: test_test_basic_concept ........................................................... Passed 0.03 sec test 21 Start 21: test_test_basic_aggregate 21: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_aggregate 21: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 21: Test timeout computed to be: 10000000 20: TEST SUITE test_basic_alphabet 20: SEQAN_ENABLE_DEBUG == 1 20: SEQAN_ENABLE_TESTING == 1 20: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 20: SEQAN_ASYNC_IO == 1 20: test_basic_alphabet_adapt_builtins_metafunction_is_char_type OK 20: test_basic_alphabet_adapt_builtins_concepts_bool OK 20: test_basic_alphabet_adapt_builtins_concepts_char OK 20: test_basic_alphabet_adapt_builtins_concepts_short OK 20: test_basic_alphabet_adapt_builtins_concepts_int OK 20: test_basic_alphabet_adapt_builtins_concepts_long OK 20: test_basic_alphabet_adapt_builtins_concepts_int8 OK 20: test_basic_alphabet_adapt_builtins_concepts_uint8 OK 20: test_basic_alphabet_adapt_builtins_concepts_int16 OK 20: test_basic_alphabet_adapt_builtins_concepts_uint16 OK 20: test_basic_alphabet_adapt_builtins_concepts_int32 OK 20: test_basic_alphabet_adapt_builtins_concepts_uint32 OK 20: test_basic_alphabet_adapt_builtins_concepts_int64 OK 20: test_basic_alphabet_adapt_builtins_concepts_uint64 OK 20: test_basic_alphabet_adapt_builtins_concepts_float OK 20: test_basic_alphabet_adapt_builtins_concepts_double OK 20: test_basic_alphabet_qualities_quality_value_size_metafunction OK 20: test_basic_alphabet_qualities_quality_has_qualities_metafunction OK 20: test_basic_alphabet_qualities_convert_quality OK 20: test_basic_alphabet_bio_gap_value_function OK 20: test_basic_alphabet_bio_unknown_value_function OK 20: test_basic_alphabet_storage_bits_per_value_metafunction OK 20: test_basic_alphabet_storage_value_size_metafunction OK 20: test_basic_alphabet_storage_value_size_function OK 20: test_basic_alphabet_storage_integral_for_value_metafunction OK 20: test_basic_alphabet_storage_bytes_per_value_metafunction OK 20: test_basic_alphabet_residue_metafunctions_dna OK 20: test_basic_alphabet_residue_metafunctions_dna5 OK 20: test_basic_alphabet_residue_metafunctions_dna_q OK 20: test_basic_alphabet_residue_metafunctions_dna5_q OK 20: test_basic_alphabet_residue_metafunctions_rna OK 20: test_basic_alphabet_residue_metafunctions_rna5 OK 20: test_basic_alphabet_residue_metafunctions_iupac OK 20: test_basic_alphabet_residue_metafunctions_amino_acid OK 20: test_basic_alphabet_residue_usage_dna OK 20: test_basic_alphabet_residue_usage_dna5 OK 20: test_basic_alphabet_residue_usage_dna_q OK 20: test_basic_alphabet_residue_usage_dna5_q OK 20: test_basic_alphabet_residue_usage_rna OK 20: test_basic_alphabet_residue_usage_rna5 OK 20: test_basic_alphabet_residue_usage_iupac OK 20: test_basic_alphabet_residue_usage_amino_acid OK 20: test_basic_alphabet_profile_metafunctions OK 20: test_basic_alphabet_profile_constructors OK 20: test_basic_alphabet_profile_relations OK 20: test_basic_alphabet_profile_empty OK 20: ************************************** 20: Total Tests: 46 20: Skipped: 0 20: Errors: 0 20: ************************************** 15: test_bam_io_bam_header_record_find_tag_key OK 17/397 Test #20: test_test_basic_alphabet .......................................................... Passed 0.03 sec test 22 Start 22: test_test_basic_allocator 22: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_allocator 22: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 22: Test timeout computed to be: 10000000 21: TEST SUITE test_basic_aggregate 21: SEQAN_ENABLE_DEBUG == 1 21: SEQAN_ENABLE_TESTING == 1 21: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 21: SEQAN_ASYNC_IO == 1 15: test_bam_io_bam_header_record_get_tag_value OK 15: test_bam_io_bam_io_context_standalone OK 15: test_bam_io_bam_io_context_fragment_store OK 15: test_assign_tags_bam_to_sam_two_tags OK 15: test_assign_tags_bam_to_sam_type_A OK 15: test_assign_tags_bam_to_sam_type_c OK 15: test_assign_tags_bam_to_sam_type_C OK 15: test_assign_tags_bam_to_sam_type_s OK 15: test_assign_tags_bam_to_sam_type_S OK 15: test_assign_tags_bam_to_sam_type_i OK 15: test_assign_tags_bam_to_sam_type_I OK 15: test_assign_tags_bam_to_sam_type_f OK 15: test_assign_tags_bam_to_sam_type_Z OK 15: test_assign_tags_bam_to_sam_type_H OK 15: test_assign_tags_bam_to_sam_type_Bc OK 15: test_assign_tags_bam_to_sam_type_BC OK 15: test_assign_tags_bam_to_sam_type_Bs OK 15: test_assign_tags_bam_to_sam_type_BS OK 15: test_assign_tags_bam_to_sam_type_Bi OK 15: test_assign_tags_bam_to_sam_type_BI OK 15: test_assign_tags_bam_to_sam_type_Bf OK 15: test_assign_tags_sam_to_bam_two_tags OK 15: test_assign_tags_sam_to_bam_type_A OK 15: test_assign_tags_sam_to_bam_type_i OK 15: test_assign_tags_sam_to_bam_type_f OK 15: test_assign_tags_sam_to_bam_type_Z OK 15: test_assign_tags_sam_to_bam_type_H OK 15: test_assign_tags_sam_to_bam_type_Bc OK 15: test_assign_tags_sam_to_bam_type_BC OK 15: test_assign_tags_sam_to_bam_type_Bs OK 15: test_assign_tags_sam_to_bam_type_BS OK 15: test_assign_tags_sam_to_bam_type_Bi OK 15: test_assign_tags_sam_to_bam_type_BI OK 15: test_assign_tags_sam_to_bam_type_Bf OK 15: test_bam_tags_dict_get_type_size OK 15: test_bam_tags_dict_get_type OK 15: test_bam_tags_dict_length OK 15: test_bam_tags_dict_extract_value_type_A OK 15: test_bam_tags_dict_extract_value_type_c OK 15: test_bam_tags_dict_extract_value_type_C OK 15: test_bam_tags_dict_extract_value_type_s OK 15: test_bam_tags_dict_extract_value_type_S OK 15: test_bam_tags_dict_extract_value_type_i OK 15: test_bam_tags_dict_extract_value_type_I OK 15: test_bam_tags_dict_get_value_type_A OK 15: test_bam_tags_dict_get_value_type_c OK 15: test_bam_tags_dict_get_value_type_C OK 15: test_bam_tags_dict_get_value_type_s OK 15: test_bam_tags_dict_get_value_type_S OK 15: test_bam_tags_dict_get_value_type_i OK 15: test_bam_tags_dict_get_value_type_I OK 15: test_bam_tags_dict_get_value_type_f OK 15: test_bam_tags_dict_get_value_type_Z OK 15: test_bam_tags_dict_get_value_type_H OK 15: test_bam_tags_dict_get_value_type_Bc OK 15: test_bam_tags_dict_get_value_type_BC OK 15: test_bam_tags_dict_get_value_type_Bs OK 15: test_bam_tags_dict_get_value_type_BS OK 15: test_bam_tags_dict_get_value_type_Bi OK 15: test_bam_tags_dict_get_value_type_BI OK 15: test_bam_tags_dict_get_value_type_Bf OK 15: test_bam_tags_dict_erase_tag OK 15: test_bam_tags_dict_set_tag_value OK 15: test_bam_tags_dict_append_tag_value OK 15: test_bam_tags_dict_const_bam_tags_sequence OK 15: test_bam_io_sam_read_header OK 15: test_bam_io_sam_read_alignment OK 15: test_bam_io_sam_write_header OK 15: test_bam_io_sam_write_alignment OK 22: TEST SUITE test_basic_allocator 22: SEQAN_ENABLE_DEBUG == 1 22: SEQAN_ENABLE_TESTING == 1 22: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 22: SEQAN_ASYNC_IO == 1 22: test_basic_allocator_simple OK 22: test_basic_allocator_pool OK 22: test_basic_allocator_multi_pool OK 22: test_basic_allocator_chunk_pool OK 22: ************************************** 22: Total Tests: 4 22: Skipped: 0 22: Errors: 0 22: ************************************** 18/397 Test #22: test_test_basic_allocator ......................................................... Passed 0.03 sec test 23 Start 23: test_test_basic_parallelism 23: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_parallelism 23: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 23: Test timeout computed to be: 10000000 21: test_basic_aggregates_pair_base_metafunctions OK 21: test_basic_aggregates_pair_base_constructors OK 21: test_basic_aggregates_pair_base_assign OK 21: test_basic_aggregates_pair_base_set OK 21: test_basic_aggregates_pair_base_move OK 21: test_basic_aggregates_pair_base_get_value OK 21: test_basic_aggregates_pair_base_assign_value OK 21: test_basic_aggregates_pair_base_set_value OK 21: test_basic_aggregates_pair_base_move_value OK 21: test_basic_aggregates_pair_base_comparison_same_spec OK 21: test_basic_aggregates_pair_base_comparison_different_spec OK 21: test_basic_aggregates_pair_base_stream_output OK 21: test_basic_aggregates_pair_packed_metafunctions OK 21: test_basic_aggregates_pair_packed_constructors OK 21: test_basic_aggregates_pair_packed_assign OK 21: test_basic_aggregates_pair_packed_set OK 21: test_basic_aggregates_pair_packed_move OK 21: test_basic_aggregates_pair_packed_get_value OK 21: test_basic_aggregates_pair_packed_assign_value OK 21: test_basic_aggregates_pair_packed_set_value OK 21: test_basic_aggregates_pair_packed_move_value OK 21: test_basic_aggregates_pair_packed_comparison_same_spec OK 21: test_basic_aggregates_pair_packed_comparison_different_spec OK 21: test_basic_aggregates_pair_packed_stream_output OK 21: test_basic_aggregates_pair_bit_packed_metafunctions OK 21: test_basic_aggregates_pair_bit_packed_constructors OK 21: test_basic_aggregates_pair_bit_packed_assign OK 21: test_basic_aggregates_pair_bit_packed_set OK 21: test_basic_aggregates_pair_bit_packed_move OK 21: test_basic_aggregates_pair_bit_packed_get_value OK 21: test_basic_aggregates_pair_bit_packed_assign_value OK 21: test_basic_aggregates_pair_bit_packed_set_value OK 21: test_basic_aggregates_pair_bit_packed_move_value OK 21: test_basic_aggregates_pair_bit_packed_comparison_same_spec OK 21: test_basic_aggregates_pair_bit_packed_comparison_different_spec OK 21: test_basic_aggregates_pair_bit_packed_stream_output OK 21: test_basic_aggregates_triple_base_metafunctions OK 21: test_basic_aggregates_triple_base_constructors OK 21: test_basic_aggregates_triple_base_assign OK 21: test_basic_aggregates_triple_base_set OK 21: test_basic_aggregates_triple_base_move OK 21: test_basic_aggregates_triple_base_get_value OK 21: test_basic_aggregates_triple_base_assign_value OK 21: test_basic_aggregates_triple_base_set_value OK 21: test_basic_aggregates_triple_base_move_value OK 21: test_basic_aggregates_triple_base_comparison_same_spec OK 21: test_basic_aggregates_triple_base_comparison_different_spec OK 21: test_basic_aggregates_triple_base_stream_output OK 21: test_basic_aggregates_triple_packed_metafunctions OK 21: test_basic_aggregates_triple_packed_constructors OK 21: test_basic_aggregates_triple_packed_assign OK 21: test_basic_aggregates_triple_packed_set OK 21: test_basic_aggregates_triple_packed_move OK 21: test_basic_aggregates_triple_packed_get_value OK 21: test_basic_aggregates_triple_packed_assign_value OK 21: test_basic_aggregates_triple_packed_set_value OK 21: test_basic_aggregates_triple_packed_move_value OK 21: test_basic_aggregates_triple_packed_comparison_same_spec OK 21: test_basic_aggregates_triple_packed_comparison_different_spec OK 21: test_basic_aggregates_triple_packed_stream_output OK 21: test_basic_aggregates_tuple_base_metafunctions OK 21: test_basic_aggregates_tuple_base_constructors OK 21: test_basic_aggregates_tuple_base_assign OK 21: test_basic_aggregates_tuple_base_set OK 21: test_basic_aggregates_tuple_base_move OK 21: test_basic_aggregates_tuple_base_get_value OK 21: test_basic_aggregates_tuple_base_assign_value OK 21: test_basic_aggregates_tuple_base_set_value OK 21: test_basic_aggregates_tuple_base_move_value OK 21: test_basic_aggregates_tuple_base_shift_left OK 21: test_basic_aggregates_tuple_base_shift_right OK 21: test_basic_aggregates_tuple_base_clear OK 21: test_basic_aggregates_tuple_base_length OK 21: test_basic_aggregates_tuple_base_comparison_same_spec OK 21: test_basic_aggregates_tuple_base_stream_output OK 21: test_basic_aggregates_tuple_bit_packed_metafunctions OK 21: test_basic_aggregates_tuple_bit_packed_constructors OK 21: test_basic_aggregates_tuple_bit_packed_assign OK 21: test_basic_aggregates_tuple_bit_packed_set OK 21: test_basic_aggregates_tuple_bit_packed_move OK 21: test_basic_aggregates_tuple_bit_packed_get_value OK 21: test_basic_aggregates_tuple_bit_packed_assign_value OK 21: test_basic_aggregates_tuple_bit_packed_set_value OK 21: test_basic_aggregates_tuple_bit_packed_move_value OK 21: test_basic_aggregates_tuple_bit_packed_shift_left OK 21: test_basic_aggregates_tuple_bit_packed_shift_right OK 21: test_basic_aggregates_tuple_bit_packed_clear OK 21: test_basic_aggregates_tuple_bit_packed_length OK 21: test_basic_aggregates_tuple_bit_packed_comparison_same_spec OK 21: test_basic_aggregates_tuple_bit_packed_stream_output OK 21: ************************************** 21: Total Tests: 90 21: Skipped: 0 21: Errors: 0 21: ************************************** 19/397 Test #21: test_test_basic_aggregate ......................................................... Passed 0.06 sec test 24 Start 24: test_test_basic_math 24: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_math 24: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 24: Test timeout computed to be: 10000000 15: test_bam_io_bam_read_header OK 15: test_bam_io_bam_read_alignment OK 23: TEST SUITE test_basic_parallelism 23: SEQAN_ENABLE_DEBUG == 1 23: SEQAN_ENABLE_TESTING == 1 23: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 23: SEQAN_ASYNC_IO == 1 23: test_basic_parallelism_enable_parallelism_macro OK 23: ************************************** 23: Total Tests: 1 23: Skipped: 0 23: Errors: 0 23: ************************************** 20/397 Test #23: test_test_basic_parallelism ....................................................... Passed 0.02 sec test 25 Start 25: test_test_basic_smart_pointer 25: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_smart_pointer 25: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 25: Test timeout computed to be: 10000000 24: TEST SUITE test_basic_math 24: SEQAN_ENABLE_DEBUG == 1 24: SEQAN_ENABLE_TESTING == 1 24: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 24: SEQAN_ASYNC_IO == 1 24: test_basic_math_int_pow OK 24: test_basic_math_log2 OK 24: test_basic_math_min OK 24: test_basic_math_max OK 24: test_basic_math_abs OK 24: ************************************** 24: Total Tests: 5 24: Skipped: 0 24: Errors: 0 24: ************************************** 21/397 Test #24: test_test_basic_math .............................................................. Passed 0.04 sec test 26 Start 26: test_test_basic_container 26: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_container 26: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 26: Test timeout computed to be: 10000000 25: TEST SUITE test_basic_smart_pointer 25: SEQAN_ENABLE_DEBUG == 1 25: SEQAN_ENABLE_TESTING == 1 25: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 25: SEQAN_ASYNC_IO == 1 25: test_basic_smart_pointer_holder_simple_metafunctions OK 25: test_basic_smart_pointer_holder_simple_constructors OK 25: test_basic_smart_pointer_holder_simple_transport OK 25: test_basic_smart_pointer_holder_simple_transport_value OK 25: test_basic_smart_pointer_holder_simple_dependencies OK 25: test_basic_smart_pointer_holder_simple_accessor OK 25: test_basic_smart_pointer_holder_tristate_metafunctions OK 25: test_basic_smart_pointer_holder_tristate_constructors OK 25: test_basic_smart_pointer_holder_tristate_transport OK 25: test_basic_smart_pointer_holder_tristate_transport_value OK 25: test_basic_smart_pointer_holder_tristate_dependencies OK 25: test_basic_smart_pointer_holder_tristate_accessor OK 25: ************************************** 25: Total Tests: 12 25: Skipped: 0 25: Errors: 0 25: ************************************** 22/397 Test #25: test_test_basic_smart_pointer ..................................................... Passed 0.04 sec test 27 Start 27: test_test_basic_proxy 27: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_proxy 27: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 27: Test timeout computed to be: 10000000 14: TEST SUITE test_arg_parse 14: SEQAN_ENABLE_DEBUG == 1 14: SEQAN_ENABLE_TESTING == 1 14: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 14: SEQAN_ASYNC_IO == 1 14: test_path_availability OK 14: test_delete_version_files OK 14: test_create_files OK 15: test_bam_io_bam_write_header OK 15: test_bam_io_bam_write_alignment OK 15: test_bam_io_bam_file_isOpen_fileIn OK 15: test_bam_io_bam_file_isOpen_fileOut OK 26: TEST SUITE test_basic_container 26: SEQAN_ENABLE_DEBUG == 1 26: SEQAN_ENABLE_TESTING == 1 26: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 26: SEQAN_ASYNC_IO == 1 26: ************************************** 26: Total Tests: 0 26: Skipped: 0 26: Errors: 0 26: ************************************** 23/397 Test #26: test_test_basic_container ......................................................... Passed 0.03 sec test 28 Start 28: test_test_basic_iterator 28: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_basic_iterator 28: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/basic 28: Test timeout computed to be: 10000000 14: test_option_on OK 14: test_delete_version_files OK 14: test_option_off OK 14: test_delete_version_files OK 15: test_bam_io_bam_file_sam_file_size OK 15: test_bam_io_bam_file_sam_read_header OK 15: test_bam_io_bam_file_sam_read_records OK 15: test_bam_io_bam_file_sam_write_header OK 15: test_bam_io_bam_file_sam_write_records OK 27: TEST SUITE test_basic_proxy 27: SEQAN_ENABLE_DEBUG == 1 27: SEQAN_ENABLE_TESTING == 1 27: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 27: SEQAN_ASYNC_IO == 1 27: test_basic_proxy_iterator_constructors OK 27: test_basic_proxy_iterator_assign OK 27: test_basic_proxy_iterator_getValue OK 27: test_basic_proxy_iterator_comparators OK 27: test_basic_proxy_iterator_stream_read OK 27: test_basic_proxy_iterator_stream_write OK 27: ************************************** 27: Total Tests: 6 27: Skipped: 0 27: Errors: 0 27: ************************************** 24/397 Test #27: test_test_basic_proxy ............................................................. Passed 0.04 sec test 29 Start 29: test_test_bed_io 29: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_bed_io 29: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/bed_io 29: Test timeout computed to be: 10000000 14: test_smaller_seqan_version OK 14: test_delete_version_files OK 14: test_delete_version_files OK 28: TEST SUITE test_basic_iterator 28: SEQAN_ENABLE_DEBUG == 1 28: SEQAN_ENABLE_TESTING == 1 28: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 28: SEQAN_ASYNC_IO == 1 28: test_basic_iterator_adapt_pointer_metafunctions OK 28: test_basic_iterator_adapt_pointer_transport OK 28: test_basic_iterator_adapt_pointer_transport_value OK 28: test_basic_iterator_adapt_pointer_movement OK 28: test_basic_iterator_adapt_pointer_arithmetics OK 28: test_basic_iterator_adapt_std_iterator_metafunctions OK 28: test_basic_iterator_adapt_std_iterator_constructors OK 28: test_basic_iterator_adapt_std_iterator_transport OK 28: test_basic_iterator_adapt_std_iterator_transport_value OK 28: test_basic_iterator_adapt_std_iterator_movement OK 28: test_basic_iterator_adapt_std_iterator_arithmetics OK 28: test_basic_iterator_adaptor_metafunctions OK 28: test_basic_iterator_adaptor_constructors OK 28: test_basic_iterator_adaptor_transport OK 28: test_basic_iterator_adaptor_transport_value OK 14: test_smaller_app_version OK 14: test_delete_version_files OK 14: test_greater_app_version OK 14: test_delete_version_files OK 28: test_basic_iterator_adaptor_movement OK 28: test_basic_iterator_adaptor_arithmetics OK 28: test_basic_iterator_adaptor_rooted_functions OK 28: test_basic_iterator_position_metafunctions OK 28: test_basic_iterator_position_constructors OK 28: test_basic_iterator_position_transport OK 28: test_basic_iterator_position_transport_value OK 28: test_basic_iterator_position_movement OK 28: test_basic_iterator_position_arithmetics OK 28: test_basic_iterator_position_rooted_functions OK 28: test_basic_iterator_zip_metafunctions OK 28: test_basic_iterator_zip_constructors OK 28: test_basic_iterator_zip_make_zip_iterator OK 28: test_basic_iterator_zip_transport OK 28: test_basic_iterator_zip_transport_value OK 28: test_basic_iterator_zip_movement OK 28: test_basic_iterator_zip_arithmetics OK 28: ************************************** 28: Total Tests: 32 28: Skipped: 0 28: Errors: 0 28: ************************************** 25/397 Test #28: test_test_basic_iterator .......................................................... Passed 0.04 sec test 30 Start 30: test_blast 30: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_blast 30: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/blast 30: Test timeout computed to be: 10000000 14: test_time_out OK 14: ************************************** 14: Total Tests: 15 14: Skipped: 0 14: Errors: 0 14: ************************************** 15: test_bam_io_bam_file_bam_file_size OK 15: test_bam_io_bam_file_bam_read_header OK 15: test_bam_io_bam_file_bam_read_records OK 29: TEST SUITE test_bed_io 29: SEQAN_ENABLE_DEBUG == 1 29: SEQAN_ENABLE_TESTING == 1 29: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 29: SEQAN_ASYNC_IO == 1 29: test_bed_read_bed3_record OK 29: test_bed_read_bed4_record OK 29: test_bed_read_bed5_record OK 29: test_bed_read_bed6_record OK 29: test_bed_read_bed12_record OK 29: test_bed_write_bed3_record OK 29: test_bed_write_bed4_record OK 29: test_bed_write_bed5_record OK 29: test_bed_write_bed6_record OK 29: test_bed_write_bed12_record OK 26/397 Test #14: test_test_arg_parse_version_check ................................................. Passed 0.36 sec test 31 Start 31: test_test_consensus 31: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_consensus 31: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus 31: Test timeout computed to be: 10000000 29: test_bed_bed_file_read OK 29: test_bed_bed_file_write OK 29: test_bed_io_isOpen_fileIn OK 29: test_bed_io_isOpen_fileOut OK 29: ************************************** 29: Total Tests: 14 29: Skipped: 0 29: Errors: 0 29: ************************************** 27/397 Test #29: test_test_bed_io .................................................................. Passed 0.07 sec test 32 Start 32: test_test_consensus_v2 32: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_consensus_v2 32: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/consensus_v2 32: Test timeout computed to be: 10000000 15: test_bam_io_bam_file_bam_read_ex1 OK 31: TEST SUITE test_consensus 31: SEQAN_ENABLE_DEBUG == 1 31: SEQAN_ENABLE_TESTING == 1 31: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 31: SEQAN_ASYNC_IO == 1 15: test_bam_io_bam_file_bam_write_header OK 15: test_bam_io_bam_file_bam_write_records OK 32: TEST SUITE test_consensus 32: SEQAN_ENABLE_DEBUG == 1 32: SEQAN_ENABLE_TESTING == 1 32: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 32: SEQAN_ASYNC_IO == 1 30: TEST SUITE test_blast 30: SEQAN_ENABLE_DEBUG == 1 30: SEQAN_ENABLE_TESTING == 1 30: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 30: SEQAN_ASYNC_IO == 1 30: test_blast_program OK 30: test_blast_context_targs OK 30: test_blast_scoring_scheme_conversion OK 30: test_blast_scoring_scheme OK 30: test_blast_blastmatch_stats_and_score OK 30: test_blast_blastmatch_bit_score_e_value OK 30: test_blast_write_lowlevel OK 30: test_blast_write_tabular_without_comments OK 30: test_blast_write_tabular_without_comments_customfields OK 30: test_blast_write_tabular_without_comments_legacy OK 30: test_blast_write_tabular_without_comments_constexpr OK 30: test_blast_write_tabular_without_comments_customfields_constexpr OK 30: test_blast_write_tabular_without_comments_legacy_constexpr OK 30: test_blast_write_tabular_with_comments OK 30: test_blast_write_tabular_with_comments_customfields OK 30: test_blast_write_tabular_with_comments_legacy OK 30: test_blast_write_tabular_with_comments_constexpr OK 30: test_blast_write_tabular_with_comments_customfields_constexpr OK 30: test_blast_write_tabular_with_comments_legacy_constexpr OK 30: test_blast_write_report OK 30: test_blast_write_report_constexpr OK 31: test_consensus_realign_one_contig_small OK 31: test_consensus_consensus_score_sequence_entry_consensus_score OK 31: test_consensus_consensus_score_sequence_entry_fractional_score OK 31: test_consensus_consensus_score_sequence_entry_weightedconsensus_score OK 31: test_consensus_sequence_entry_for_score_metafunction_consensus_score OK 31: test_consensus_sequence_entry_for_score_metafunction_fractional_score OK 31: test_consensus_sequence_entry_for_score_metafunction_weightedconsensus_score OK 31: test_consensus_sequence_entry_for_score_consensus_score OK 31: test_consensus_sequence_entry_for_score_fractional_score OK 31: test_consensus_sequence_entry_for_score_weightedconsensus_score OK 31: test_consensus_host_consensus_score OK 31: test_consensus_host_fractional_score OK 31: test_consensus_host_weightedconsensus_score OK 31: test_consensus_position_consensus_score OK 31: test_consensus_position_fractional_score OK 31: test_consensus_position_weightedconsensus_score OK 31: test_consensus_value_consensus_score OK 31: test_consensus_value_fractional_score OK 31: test_consensus_value_weightedconsensus_score OK 31: ************************************** 31: Total Tests: 19 31: Skipped: 0 31: Errors: 0 31: ************************************** 28/397 Test #31: test_test_consensus ............................................................... Passed 0.23 sec test 33 Start 33: test_test_find 33: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_find 33: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/find 33: Test timeout computed to be: 10000000 30: test_blast_write_report_constexpr_dynmatrix OK 12: test_alignment_free_alignment_free_comparison OK 12: test_alignment_free_count_kmers OK 12: test_alignment_free_calculate_periodicity OK 12: test_alignment_free_calculate_overlap_indicator OK 12: test_alignment_free_string_to_string_set OK 12: test_alignment_free_cut_ns OK 12: ************************************** 12: Total Tests: 14 12: Skipped: 0 12: Errors: 0 12: ************************************** 29/397 Test #12: test_test_alignment_free .......................................................... Passed 0.70 sec test 34 Start 34: test_test_gff_io 34: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_gff_io 34: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/gff_io 34: Test timeout computed to be: 10000000 33: TEST SUITE test_find 33: SEQAN_ENABLE_DEBUG == 1 33: SEQAN_ENABLE_TESTING == 1 33: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 33: SEQAN_ASYNC_IO == 1 33: test_myers_find_begin OK 30: test_blast_read_lowlevel OK 30: test_blast_read_tabular_without_comments OK 30: test_blast_read_tabular_without_comments_customfields OK 30: test_blast_read_tabular_without_comments_legacy OK 30: test_blast_read_tabular_without_comments_constexpr OK 30: test_blast_read_tabular_without_comments_customfields_constexpr OK 30: test_blast_read_tabular_without_comments_legacy_constexpr OK 30: test_blast_read_tabular_with_comments OK 34: TEST SUITE test_gff_io 34: SEQAN_ENABLE_DEBUG == 1 34: SEQAN_ENABLE_TESTING == 1 34: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 34: SEQAN_ASYNC_IO == 1 30: test_blast_read_tabular_with_comments_customfields OK 34: test_store_io_read_record_context_gff OK 30: test_blast_read_tabular_with_comments_legacy OK 30: test_blast_read_tabular_with_comments_constexpr OK 30: test_blast_read_tabular_with_comments_customfields_constexpr OK 32: test_consensus_consensus_alignment_coordinates OK 34: test_store_io_write_record_context_gff OK 34: test_store_io_comment_processing_context_gff OK 34: test_store_io_read_record_context_gtf OK 34: test_store_io_read_record_gtf_pseudogenes OK 30: test_blast_read_tabular_with_comments_legacy_constexpr OK 34: test_store_io_write_record_context_gtf OK 34: test_store_io_gff_stream_read_record_gff OK 34: test_store_io_gff_stream_read_record_gtf OK 34: test_store_io_gff_stream_write_record_gff OK 34: test_store_io_gff_stream_write_record_gtf OK 34: test_gff_io_isOpen_fileIn OK 34: test_gff_io_isOpen_fileOut OK 34: ************************************** 34: Total Tests: 12 34: Skipped: 0 34: Errors: 0 34: ************************************** 30: ************************************** 30: Total Tests: 35 30: Skipped: 0 30: Errors: 0 30: ************************************** 30/397 Test #30: test_blast ........................................................................ Passed 0.35 sec 31/397 Test #34: test_test_gff_io .................................................................. Passed 0.03 sec test 35 Start 35: test_test_graph_algorithms 35: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_algorithms 35: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_algorithms 35: Test timeout computed to be: 10000000 test 36 Start 36: test_test_graph_align 36: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_align 36: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_align 36: Test timeout computed to be: 10000000 32: test_consensus_consensus_alignment_contig_ids OK 35: TEST SUITE test_graph_algorithms 35: SEQAN_ENABLE_DEBUG == 1 35: SEQAN_ENABLE_TESTING == 1 35: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 35: SEQAN_ASYNC_IO == 1 35: test_heap_tree OK 35: test_breadth_first_search OK 35: test_depth_first_search OK 35: test_topological_sort OK 35: test_strongly_connected_components OK 35: test_connected_components OK 35: test_prims_algorithm OK 35: test_union_find OK 35: test_kruskals_algorithm OK 35: test_mst_all OK 35: test_dag_shortest_path OK 35: test_bellmann_ford OK 35: test_dijkstra OK 35: test_all_pairs_shortest_path OK 35: test_floyd_warshall OK 35: test_transitive_closure OK 35: test_ford_fulkerson OK 35: test_path_growing_algorithm OK 35: test_longest_increasing_subsequence OK 35: test_longest_common_subsequence OK 35: test_heaviest_increasing_subsequence OK 35: test_hmm_algorithm OK 35: ************************************** 35: Total Tests: 22 35: Skipped: 0 35: Errors: 0 35: ************************************** 32/397 Test #35: test_test_graph_algorithms ........................................................ Passed 0.06 sec test 37 Start 37: test_test_graph_msa 37: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_msa 37: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_msa 37: Test timeout computed to be: 10000000 32: test_consensus_consensus_alignment_no_contig_ids OK 32: test_consensus_consensus_alignment_global_alignment OK 32: ************************************** 32: Total Tests: 4 32: Skipped: 0 32: Errors: 0 32: ************************************** 36: TEST SUITE test_graph_align 36: SEQAN_ENABLE_DEBUG == 1 36: SEQAN_ENABLE_TESTING == 1 36: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 36: SEQAN_ASYNC_IO == 1 33/397 Test #32: test_test_consensus_v2 ............................................................ Passed 0.39 sec test 38 Start 38: test_test_graph_types_property_map 38: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_types_property_map 38: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types 38: Test timeout computed to be: 10000000 36: Test_Refinement_AlignmentGraphNoEdgeWeights OK 36: Test_Refinement_AlignmentGraphEdgeWeights OK 36: Test_Refinement_AlignmentGraphIterators OK 36: Test_Refinement_AlignmentGraphOutput OK 36: Test_Refinement_HeaviestCommonSubsequence OK 36: Test_Refinement_OutEdgeIteratorAlignment OK 36: RefineMatchesSelfEdges OK 36: RefineAlign SKIPPED 36: RefineInexactFragment OK 36: ************************************** 36: Total Tests: 9 36: Skipped: 1 36: Errors: 0 36: ************************************** 34/397 Test #36: test_test_graph_align ............................................................. Passed 0.10 sec test 39 Start 39: test_test_graph_types_derived 39: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_types_derived 39: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types 39: Test timeout computed to be: 10000000 37: TEST SUITE test_graph_msa 37: SEQAN_ENABLE_DEBUG == 1 37: SEQAN_ENABLE_TESTING == 1 37: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 37: SEQAN_ASYNC_IO == 1 38: TEST SUITE test_graph_types_property_map 38: SEQAN_ENABLE_DEBUG == 1 38: SEQAN_ENABLE_TESTING == 1 38: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 38: SEQAN_ASYNC_IO == 1 38: test_graph_types_property_map_external OK 38: test_graph_types_property_map_external_assign_vertex_map OK 38: test_graph_types_property_map_external_assign_edge_map OK 38: test_graph_types_property_internal_pointer_map OK 38: test_graph_types_property_internal_pointer_map_assign_edge_map_member OK 38: test_graph_types_property_internal_map OK 38: test_graph_types_property_internal_map_assign_edge_map OK 38: ************************************** 38: Total Tests: 7 38: Skipped: 0 38: Errors: 0 38: ************************************** 39: TEST SUITE test_graph_types_derived 39: SEQAN_ENABLE_DEBUG == 1 39: SEQAN_ENABLE_TESTING == 1 39: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 39: SEQAN_ASYNC_IO == 1 35/397 Test #38: test_test_graph_types_property_map ................................................ Passed 0.06 sec test 40 Start 40: test_test_graph_types_iterators 40: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_types_iterators 40: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types 40: Test timeout computed to be: 10000000 39: test_graph_types_derived_set_oracle OK 39: test_graph_types_derived_trie OK 39: test_graph_types_derived_oracle OK 39: ************************************** 39: Total Tests: 3 39: Skipped: 0 39: Errors: 0 39: ************************************** 36/397 Test #39: test_test_graph_types_derived ..................................................... Passed 0.04 sec test 41 Start 41: test_test_graph_types_types 41: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_types_types 41: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types 41: Test timeout computed to be: 10000000 37: test_graph_msa_guide_tree_neighbour_joining OK 40: TEST SUITE test_graph_types_iterators 40: SEQAN_ENABLE_DEBUG == 1 40: SEQAN_ENABLE_TESTING == 1 40: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 40: SEQAN_ASYNC_IO == 1 41: TEST SUITE test_graph_types_property_map 41: SEQAN_ENABLE_DEBUG == 1 41: SEQAN_ENABLE_TESTING == 1 41: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 41: SEQAN_ASYNC_IO == 1 40: test_graph_types_iterators_vertex_iterator OK 40: test_graph_types_iterators_out_edge_iterator OK 40: test_graph_types_iterators_edge_iterator OK 40: test_graph_types_iterators_ajacency_iterator OK 40: test_graph_types_bfs_iter OK 40: test_graph_types_dfs_preorder_iter OK 40: ************************************** 40: Total Tests: 6 40: Skipped: 0 40: Errors: 0 40: ************************************** 37/397 Test #40: test_test_graph_types_iterators ................................................... Passed 0.06 sec test 42 Start 42: test_test_graph_types_utils 42: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_graph_types_utils 42: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/graph_types 42: Test timeout computed to be: 10000000 33: test_myers_find_banded OK 33: test_myers_find_banded_csp OK 41: test_graph_types_types_directed OK 41: test_graph_types_types_undirected OK 41: test_graph_types_types_automaton OK 42: TEST SUITE test_graph_types_utils 42: SEQAN_ENABLE_DEBUG == 1 42: SEQAN_ENABLE_TESTING == 1 42: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 42: SEQAN_ASYNC_IO == 1 42: test_graph_types_utils_graph_drawing OK 42: ************************************** 42: Total Tests: 1 42: Skipped: 0 42: Errors: 0 42: ************************************** 33: test_myers_find_infix_find_begin_at_start OK 33: test_myers_find_infix_find_begin_within OK 33: test_find_on_segments OK 38/397 Test #42: test_test_graph_types_utils ....................................................... Passed 0.02 sec test 43 Start 43: test_test_index_creation 43: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_creation 43: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 43: Test timeout computed to be: 10000000 33: test_find_hamming_simple OK 33: test_find_hamming_simple_regression_rmbench OK 33: test_regression_rmbench OK 41: test_graph_types_types_word_graph OK 41: test_graph_types_types_word_tree OK 41: test_graph_types_types_hmm OK 41: ************************************** 41: Total Tests: 6 41: Skipped: 0 41: Errors: 0 41: ************************************** 39/397 Test #41: test_test_graph_types_types ....................................................... Passed 0.09 sec test 44 Start 44: test_test_index_crosscompare_char 44: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_crosscompare_char 44: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 44: Test timeout computed to be: 10000000 33: test_find_online_Simple OK 33: test_find_online_Horspool OK 33: test_find_online_ShiftAnd OK 33: test_find_online_ShiftOr OK 33: test_find_online_BndmAlgo OK 33: test_find_online_BFAM_Oracle OK 33: test_find_online_BFAM_Trie OK 37: test_graph_msa_guide_tree_upgma_weight_avg OK 33: test_find_online_wildcards OK 37: test_graph_msa_guide_tree_upgma_avg OK 33: test_find_online_multi_AhoCorasick OK 33: test_find_online_multi_MultipleShiftAnd OK 33: test_find_online_multi_SetHorspool OK 43: TEST SUITE test_index 43: SEQAN_ENABLE_DEBUG == 1 43: SEQAN_ENABLE_TESTING == 1 43: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 43: SEQAN_ASYNC_IO == 1 37: test_graph_msa_guide_tree_upgma_min OK 44: TEST SUITE test_index 44: SEQAN_ENABLE_DEBUG == 1 44: SEQAN_ENABLE_TESTING == 1 44: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 44: SEQAN_ASYNC_IO == 1 33: test_find_online_multi_WuManber OK 33: test_find_online_multi_MultiBFAM_Oracle OK 33: test_find_online_multi_MultiBFAM_Trie OK 33: test_find_approx_prefix_edit_dist_dpsearch OK 33: test_approx_prefix_edit_dist_myers OK 33: test_approx_edit_dist_dp_search_simple_score OK 33: test_approx_edit_dist_myers OK 33: test_approx_edit_dp_search_simple_score_legacy_case OK 33: test_approx_edit_dist_abndm_algo OK 33: test_approx_edit_dist_pex_non_hierarchical OK 33: test_approx_edit_dist_pex_hierarchical OK 33: test_approx_edit_dist_pex_non_hierarchical_aho_corasick OK 33: test_approx_edit_dist_pex_non_hierarchical_multi_bfam OK 33: test_find_hamming_simple OK 33: test_pattern_copycon OK 33: test_pattern_assign OK 33: test_pattern_movecon OK 33: test_pattern_moveassign OK 33: test_pattern_set_host OK 33: ************************************** 33: Total Tests: 39 33: Skipped: 0 33: Errors: 0 33: ************************************** 40/397 Test #33: test_test_find .................................................................... Passed 0.45 sec test 45 Start 45: test_test_index_crosscompare_char_dfi 45: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_crosscompare_char_dfi 45: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 45: Test timeout computed to be: 10000000 44: testIndexCrossCompareChar OK 44: ************************************** 44: Total Tests: 1 44: Skipped: 0 44: Errors: 0 44: ************************************** 41/397 Test #44: test_test_index_crosscompare_char ................................................. Passed 0.14 sec test 46 Start 46: test_test_index_crosscompare_dna 46: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_crosscompare_dna 46: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 46: Test timeout computed to be: 10000000 37: test_graph_msa_guide_tree_upgma_max OK 37: test_distances OK 43: testIndexModifiedStringReverseEsa OK 37: test_libraries OK 45: TEST SUITE test_index 45: SEQAN_ENABLE_DEBUG == 1 45: SEQAN_ENABLE_TESTING == 1 45: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 45: SEQAN_ASYNC_IO == 1 45: testIndexCrossCompareCharDfi OK 45: ************************************** 45: Total Tests: 1 45: Skipped: 0 45: Errors: 0 45: ************************************** 42/397 Test #45: test_test_index_crosscompare_char_dfi ............................................. Passed 0.02 sec test 47 Start 47: test_test_index_crosscompare_dna_dfi 47: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_crosscompare_dna_dfi 47: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 47: Test timeout computed to be: 10000000 37: test_external_libraries OK 37: test_triplet_extension OK 37: test_sop OK 37: test_progressive OK 37: test_reversable_fragments OK 37: ************************************** 37: Total Tests: 12 37: Skipped: 0 37: Errors: 0 37: ************************************** 43/397 Test #37: test_test_graph_msa ............................................................... Passed 0.33 sec test 48 Start 48: test_test_index_qgram 48: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_qgram 48: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 48: Test timeout computed to be: 10000000 47: TEST SUITE test_index 47: SEQAN_ENABLE_DEBUG == 1 47: SEQAN_ENABLE_TESTING == 1 47: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 47: SEQAN_ASYNC_IO == 1 47: testIndexCrossCompareDnaDfi OK 47: ************************************** 47: Total Tests: 1 47: Skipped: 0 47: Errors: 0 47: ************************************** 44/397 Test #47: test_test_index_crosscompare_dna_dfi .............................................. Passed 0.03 sec test 49 Start 49: test_test_index_sa_bwtwalk 49: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_sa_bwtwalk 49: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 49: Test timeout computed to be: 10000000 48: TEST SUITE test_index 48: SEQAN_ENABLE_DEBUG == 1 48: SEQAN_ENABLE_TESTING == 1 48: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 48: SEQAN_ASYNC_IO == 1 48: testStepSize OK 48: testGappedShapes OK 48: testUngappedShapes OK 48: testUngappedQGramIndex OK 48: start 48: scan took 2.603e-06 seconds. 48: start write 48: writing took 4.777e-06 seconds. 48: reading took 3.195e-06 seconds. 48: start 48: scan took 1.943e-06 seconds. 48: start write 48: writing took 2.013e-06 seconds. 48: reading took 2.61001e-07 seconds. 48: testUngappedQGramIndexMulti OK 48: testQGramFind OK 48: ************************************** 48: Total Tests: 6 48: Skipped: 0 48: Errors: 0 48: ************************************** 45/397 Test #48: test_test_index_qgram ............................................................. Passed 0.07 sec test 50 Start 50: test_test_index_shapes 50: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_shapes 50: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 50: Test timeout computed to be: 10000000 43: testIndexModifiedStringReverseFM OK 43: testIndexModifiedStringViewEsa OK 43: testIndexModifiedStringViewFM OK 46: TEST SUITE test_index 46: SEQAN_ENABLE_DEBUG == 1 46: SEQAN_ENABLE_TESTING == 1 46: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 46: SEQAN_ASYNC_IO == 1 49: TEST SUITE test_index 49: SEQAN_ENABLE_DEBUG == 1 49: SEQAN_ENABLE_TESTING == 1 49: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 49: SEQAN_ASYNC_IO == 1 50: TEST SUITE test_index 50: SEQAN_ENABLE_DEBUG == 1 50: SEQAN_ENABLE_TESTING == 1 50: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 50: SEQAN_ASYNC_IO == 1 50: testShapes OK 50: ************************************** 50: Total Tests: 1 50: Skipped: 0 50: Errors: 0 50: ************************************** 46/397 Test #50: test_test_index_shapes ............................................................ Passed 0.05 sec test 51 Start 51: test_test_index_drawing 51: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_drawing 51: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 51: Test timeout computed to be: 10000000 43: testIssue519 OK 51: TEST SUITE test_index_drawing 51: SEQAN_ENABLE_DEBUG == 1 51: SEQAN_ENABLE_TESTING == 1 51: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 51: SEQAN_ASYNC_IO == 1 51: test_index_drawing_esa_dot OK 51: ************************************** 51: Total Tests: 1 51: Skipped: 0 51: Errors: 0 51: ************************************** 47/397 Test #51: test_test_index_drawing ........................................................... Passed 0.04 sec test 52 Start 52: test_test_index_fm_rank_dictionary 52: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_fm_rank_dictionary 52: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 52: Test timeout computed to be: 10000000 52: TEST SUITE tests 52: SEQAN_ENABLE_DEBUG == 1 52: SEQAN_ENABLE_TESTING == 1 52: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 52: SEQAN_ASYNC_IO == 1 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 2u, 2u> > > OK 46: testIndexCrossCompareDna OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 46: testIndexCrossCompareDnaStrings OK 46: ************************************** 46: Total Tests: 2 46: Skipped: 0 46: Errors: 0 46: ************************************** 48/397 Test #46: test_test_index_crosscompare_dna .................................................. Passed 0.40 sec test 53 Start 53: test_test_index_fm_sparse_string 53: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_fm_sparse_string 53: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 53: Test timeout computed to be: 10000000 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 53: TEST SUITE test_fm_index_sparse_string 53: SEQAN_ENABLE_DEBUG == 1 53: SEQAN_ENABLE_TESTING == 1 53: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 53: SEQAN_ASYNC_IO == 1 53: sparse_string_get_value OK 53: sparse_string_clear_length_resize OK 53: sparse_string_empty OK 53: sparse_string_get_fibre OK 53: ************************************** 53: Total Tests: 4 53: Skipped: 0 53: Errors: 0 53: ************************************** 49/397 Test #53: test_test_index_fm_sparse_string .................................................. Passed 0.02 sec test 54 Start 54: test_test_index_base 54: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_base 54: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 54: Test timeout computed to be: 10000000 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, 1u, 0u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary > >, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_Constructor type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, 1u, 0u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary > >, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_CreateRankDictionary type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, 1u, 0u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary > >, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_ClearEmpty type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, 1u, 0u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary > >, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetValue type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 54: TEST SUITE tests 54: SEQAN_ENABLE_DEBUG == 1 54: SEQAN_ENABLE_TESTING == 1 54: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 54: SEQAN_ASYNC_IO == 1 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 54: IndexTest_IndexCreate type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 54: IndexTest_IndexCreate type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 54: IndexTest_IndexCreate type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_IndexCreate type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, 1u, 0u> > > OK 54: IndexTest_IndexCreate type parameter seqan::Index >, seqan::FMIndex > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 49: testBWTWalk OK 49: ************************************** 49: Total Tests: 1 49: Skipped: 0 49: Errors: 0 49: ************************************** 50/397 Test #49: test_test_index_sa_bwtwalk ........................................................ Passed 0.64 sec test 55 Start 55: test_test_index_fm 55: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_fm 55: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 55: Test timeout computed to be: 10000000 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary > >, seqan::WaveletTree, 1u, 0u> > > OK 55: TEST SUITE tests 55: SEQAN_ENABLE_DEBUG == 1 55: SEQAN_ENABLE_TESTING == 1 55: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 55: SEQAN_ASYNC_IO == 1 52: RankDictionaryTest_GetRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 55: LFTest_IsSentinel type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index >, seqan::FMIndex > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, 1u, 1u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary > >, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 1u, 1u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, 2u, 2u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 43: testIndexCreation OK 43: ************************************** 43: Total Tests: 6 43: Skipped: 0 43: Errors: 0 43: ************************************** 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary > >, seqan::Levels, 2u, 2u> > > OK 51/397 Test #43: test_test_index_creation .......................................................... Passed 1.14 sec test 56 Start 56: test_test_index_bifm 56: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_bifm 56: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 56: Test timeout computed to be: 10000000 56: TEST SUITE tests 56: SEQAN_ENABLE_DEBUG == 1 56: SEQAN_ENABLE_TESTING == 1 56: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 56: SEQAN_ASYNC_IO == 1 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 2u, 2u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, 3u, 3u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary > >, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::Levels, 3u, 3u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, 1u, 0u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary > >, seqan::WaveletTree, 1u, 0u> > > OK 52: RankDictionaryPrefixTest_GetPrefixRank type parameter seqan::RankDictionary, seqan::WaveletTree, 1u, 0u> > > OK 52: ************************************** 52: Total Tests: 239 52: Skipped: 0 52: Errors: 0 52: ************************************** 52/397 Test #52: test_test_index_fm_rank_dictionary ................................................ Passed 1.02 sec test 57 Start 57: test_test_index_vstree 57: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_vstree 57: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 57: Test timeout computed to be: 10000000 57: TEST SUITE tests 57: SEQAN_ENABLE_DEBUG == 1 57: SEQAN_ENABLE_TESTING == 1 57: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 57: SEQAN_ASYNC_IO == 1 54: IndexTest_IndexCreate type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 56: BidirectionalFMIndexTest_SearchInString type parameter seqan::Index >, seqan::BidirectionalIndex > > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_IndexCreate type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_Length type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 54: IndexTest_Length type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 54: IndexTest_Length type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_Length type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_Length type parameter seqan::Index >, seqan::FMIndex > > OK 54: IndexTest_Length type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_Length type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 56: BidirectionalFMIndexTest_SearchInString type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 56: BidirectionalFMIndexTest_SearchInString type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 56: BidirectionalFMIndexTest_SearchInString type parameter seqan::Index >, seqan::BidirectionalIndex > > > OK 55: LFTest_IsSentinel type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_Constructor type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index >, seqan::FMIndex > > OK 56: BidirectionalFMIndexTest_SearchInString type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 56: BidirectionalFMIndexTest_SearchInString type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 54: IndexTest_ClearEmpty type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_OpenSave type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 54: IndexTest_OpenSave type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 54: IndexTest_OpenSave type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_OpenSave type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 54: IndexTest_OpenSave type parameter seqan::Index >, seqan::FMIndex > > OK 55: LFTest_IsSentinel type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_OpenSave type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 57: TopDownIndexIteratorTest_GoDown type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 57: ************************************** 57: Total Tests: 14 57: Skipped: 0 57: Errors: 0 57: ************************************** 53/397 Test #57: test_test_index_vstree ............................................................ Passed 2.22 sec test 58 Start 58: test_test_index_view 58: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_view 58: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 58: Test timeout computed to be: 10000000 58: TEST SUITE test_index_view 58: SEQAN_ENABLE_DEBUG == 1 58: SEQAN_ENABLE_TESTING == 1 58: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 58: SEQAN_ASYNC_IO == 1 58: test_index_view_basic OK 58: ************************************** 58: Total Tests: 1 58: Skipped: 0 58: Errors: 0 58: ************************************** 54/397 Test #58: test_test_index_view .............................................................. Passed 0.04 sec test 59 Start 59: test_test_index_finder 59: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_finder 59: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 59: Test timeout computed to be: 10000000 55: CSATest_IndexSA type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 54: IndexTest_OpenSave type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 54: ************************************** 54: Total Tests: 28 54: Skipped: 0 54: Errors: 0 54: ************************************** 55/397 Test #54: test_test_index_base .............................................................. Passed 3.19 sec test 60 Start 60: test_test_find_backtracking 60: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_find_backtracking 60: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 60: Test timeout computed to be: 10000000 55: CSATest_IndexSA type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index >, seqan::FMIndex > > OK 55: CSATest_IndexSA type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: CSATest_BeginEnd type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 55: CSATest_BeginEnd type parameter seqan::Index >, seqan::FMIndex > > OK 60: TEST SUITE test_find_backtracking_exp 60: SEQAN_ENABLE_DEBUG == 1 60: SEQAN_ENABLE_TESTING == 1 60: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 60: SEQAN_ASYNC_IO == 1 60: test_find_backtracking_multiple_hamming_banana_vs_ada_ana OK 60: test_find_backtracking_multiple_edit_banana_vs_ada_ana OK 60: ************************************** 60: Total Tests: 2 60: Skipped: 0 60: Errors: 0 60: ************************************** 56/397 Test #60: test_test_find_backtracking ....................................................... Passed 0.50 sec test 61 Start 61: test_test_index_repeats 61: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_index_repeats 61: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/index 61: Test timeout computed to be: 10000000 55: CSATest_BeginEnd type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 59: TEST SUITE tests 59: SEQAN_ENABLE_DEBUG == 1 59: SEQAN_ENABLE_TESTING == 1 59: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 59: SEQAN_ASYNC_IO == 1 59: IndexFinderTest_FindFirstChar type parameter seqan::Index >, seqan::IndexSa > OK 59: IndexFinderTest_FindFirstChar type parameter seqan::Index >, seqan::IndexEsa > OK 61: TEST SUITE test_index_repeats 61: SEQAN_ENABLE_DEBUG == 1 61: SEQAN_ENABLE_TESTING == 1 61: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 61: SEQAN_ASYNC_IO == 1 61: test_index_repeats_period_1_ignore_minlen_for_ns OK 55: CSATest_BeginEnd type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 61: test_index_repeats_period_1_no_ns OK 61: test_index_repeats_period_1_many_ns OK 61: ************************************** 61: Total Tests: 3 61: Skipped: 0 61: Errors: 0 61: ************************************** 57/397 Test #61: test_test_index_repeats ........................................................... Passed 0.36 sec test 62 Start 62: test_test_journaled_set 62: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_journaled_set 62: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_set 62: Test timeout computed to be: 10000000 62: TEST SUITE test_journaled_set 62: SEQAN_ENABLE_DEBUG == 1 62: SEQAN_ENABLE_TESTING == 1 62: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 62: SEQAN_ASYNC_IO == 1 62: test_journaled_set_constructor OK 62: test_journaled_set_assign OK 62: test_journaled_set_set_host OK 62: test_journaled_set_host OK 62: test_journaled_set_assign_value OK 62: test_journaled_set_append_value OK 62: test_journaled_set_value OK 62: test_journaled_set_clear OK 62: test_journaled_set_resize OK 62: test_journaled_set_empty OK 62: test_journaled_set_iterator OK 62: ************************************** 62: Total Tests: 11 62: Skipped: 0 62: Errors: 0 62: ************************************** 58/397 Test #62: test_test_journaled_set ........................................................... Passed 0.03 sec test 63 Start 63: test_test_journaled_string_tree 63: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_journaled_string_tree 63: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree 63: Test timeout computed to be: 10000000 55: CSATest_BeginEnd type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: CSATest_BeginEnd type parameter seqan::Index >, seqan::FMIndex > > OK 55: CSATest_BeginEnd type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 55: CSATest_BeginEnd type parameter seqan::Index >, seqan::FMIndex > > OK 59: IndexFinderTest_FindFirstChar type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 59: IndexFinderTest_FindFirstChar type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_FindFirstChar type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 63: TEST SUITE test_journaled_string_tree 63: SEQAN_ENABLE_DEBUG == 1 63: SEQAN_ENABLE_TESTING == 1 63: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 63: SEQAN_ASYNC_IO == 1 63: test_journaled_string_tree_constructor OK 63: test_journaled_string_tree_length OK 63: test_journaled_string_tree_set_host OK 63: test_journaled_string_tree_host OK 63: test_journaled_string_tree_insert OK 63: test_journaled_string_tree_erase OK 63: test_journaled_string_tree_clear OK 63: test_journaled_string_tree_empty OK 63: test_journaled_string_tree_resize OK 63: test_journaled_string_tree_max_size OK 63: test_journaled_string_tree_size OK 63: ************************************** 63: Total Tests: 11 63: Skipped: 0 63: Errors: 0 63: ************************************** 59/397 Test #63: test_test_journaled_string_tree ................................................... Passed 0.20 sec test 64 Start 64: test_test_delta_map 64: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_delta_map 64: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree 64: Test timeout computed to be: 10000000 55: CSATest_BeginEnd type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 55: ************************************** 55: Total Tests: 27 55: Skipped: 0 55: Errors: 0 55: ************************************** 56: BidirectionalFMIndexTest_SearchInStringSet type parameter seqan::Index >, seqan::BidirectionalIndex > > > OK 59: IndexFinderTest_FindFirstChar type parameter seqan::Index >, seqan::FMIndex > > OK 60/397 Test #55: test_test_index_fm ................................................................ Passed 4.20 sec test 65 Start 65: test_journaled_string_tree_traverser 65: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_journaled_string_tree_traverser 65: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree 65: Test timeout computed to be: 10000000 64: TEST SUITE test_delta_map 64: SEQAN_ENABLE_DEBUG == 1 64: SEQAN_ENABLE_TESTING == 1 64: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 64: SEQAN_ASYNC_IO == 1 64: test_delta_map_delta_store_is_delta_type OK 64: test_delta_map_delta_store_select_delta_type OK 64: test_delta_map_delta_store_get_delta_store OK 64: test_delta_map_delta_store_add_delta_value OK 64: test_delta_map_delta_store_erase_delta_value OK 64: test_delta_map_delta_store_delta_value OK 64: test_delta_map_delta_store_clear OK 64: test_delta_map_delta_store_deletion_size OK 65: TEST SUITE test_journaled_string_tree_traverser 65: SEQAN_ENABLE_DEBUG == 1 65: SEQAN_ENABLE_TESTING == 1 65: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 65: SEQAN_ASYNC_IO == 1 64: test_delta_map_delta_store_insertion_size OK 64: test_delta_map_delta_store_net_size OK 64: test_delta_map_insert OK 64: test_delta_map_erase OK 64: test_delta_map_lower_bound OK 64: test_delta_map_upper_bound OK 64: test_delta_map_count OK 64: test_delta_map_equal_range OK 64: test_delta_map_find OK 64: test_delta_map_size OK 64: test_delta_map_empty OK 64: test_delta_map_iterator OK 64: test_delta_map_iterator_copy_constructor OK 64: test_delta_map_iterator_assign OK 64: test_delta_map_iterator_value OK 64: test_delta_map_iterator_delta_value OK 64: test_delta_map_entry_delta_coverage OK 64: test_delta_map_entry_delta_type OK 64: test_delta_map_entry_delta_position OK 64: ************************************** 64: Total Tests: 27 64: Skipped: 0 64: Errors: 0 64: ************************************** 65: test_journaled_string_tree_traverser_constructor OK 65: test_journaled_string_tree_traverser_traverser OK 61/397 Test #64: test_test_delta_map ............................................................... Passed 0.38 sec test 66 Start 66: test_journaled_string_tree_find 66: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_journaled_string_tree_find 66: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/journaled_string_tree 66: Test timeout computed to be: 10000000 65: test_journaled_string_tree_traverser_init OK 65: test_journaled_string_tree_traverser_context_size OK 65: test_journaled_string_tree_traverser_branch_size OK 65: test_journaled_string_tree_traverser_at_end OK 65: test_journaled_string_tree_traverser_is_base OK 65: test_journaled_string_tree_traverser_advance OK 65: test_journaled_string_tree_traverser_context_iterator OK 65: test_journaled_string_tree_traverser_container OK 65: test_journaled_string_tree_traverser_basic_traversal OK 65: ************************************** 65: Total Tests: 11 65: Skipped: 0 65: Errors: 0 65: ************************************** 62/397 Test #65: test_journaled_string_tree_traverser .............................................. Passed 0.33 sec test 67 Start 67: test_test_map 67: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_map 67: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/map 67: Test timeout computed to be: 10000000 67: TEST SUITE test_map 67: SEQAN_ENABLE_DEBUG == 1 67: SEQAN_ENABLE_TESTING == 1 67: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 67: SEQAN_ASYNC_IO == 1 59: IndexFinderTest_FindFirstChar type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 66: TEST SUITE test_journaled_string_tree_find 66: SEQAN_ENABLE_DEBUG == 1 66: SEQAN_ENABLE_TESTING == 1 66: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 66: SEQAN_ASYNC_IO == 1 59: IndexFinderTest_FindFirstChar type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index >, seqan::IndexSa > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index >, seqan::IndexEsa > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index >, seqan::FMIndex > > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 59: IndexFinderTest_DefaultFinder type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdString type parameter seqan::Index >, seqan::IndexSa > OK 59: IndexFinderTest_StdString type parameter seqan::Index >, seqan::IndexEsa > OK 59: IndexFinderTest_StdString type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 59: IndexFinderTest_StdString type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdString type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdString type parameter seqan::Index >, seqan::FMIndex > > OK 59: IndexFinderTest_StdString type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdString type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdVector type parameter seqan::Index >, seqan::IndexSa > OK 59: IndexFinderTest_StdVector type parameter seqan::Index >, seqan::IndexEsa > OK 59: IndexFinderTest_StdVector type parameter seqan::Index, seqan::Alloc >, seqan::FMIndex > > OK 59: IndexFinderTest_StdVector type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdVector type parameter seqan::Index, seqan::Packed > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdVector type parameter seqan::Index >, seqan::FMIndex > > OK 59: IndexFinderTest_StdVector type parameter seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > OK 59: IndexFinderTest_StdVector type parameter seqan::Index >, seqan::Owner > >, seqan::FMIndex > > OK 59: ************************************** 59: Total Tests: 32 59: Skipped: 0 59: Errors: 0 59: ************************************** 63/397 Test #59: test_test_index_finder ............................................................ Passed 2.17 sec test 68 Start 68: test_test_misc 68: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_misc 68: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/misc 68: Test timeout computed to be: 10000000 68: TEST SUITE test_misc 68: SEQAN_ENABLE_DEBUG == 1 68: SEQAN_ENABLE_TESTING == 1 68: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 68: SEQAN_ASYNC_IO == 1 68: test_misc_terminal_get_terminal_size OK 68: test_misc_bit_twiddling_pop_count_char OK 68: test_misc_bit_twiddling_pop_count_signed_char OK 68: test_misc_bit_twiddling_pop_count_unsigned_char OK 68: test_misc_bit_twiddling_pop_count_short OK 68: test_misc_bit_twiddling_pop_count_signed_short OK 68: test_misc_bit_twiddling_pop_count_unsigned_short OK 68: test_misc_bit_twiddling_pop_count_int OK 68: test_misc_bit_twiddling_pop_count_signed_int OK 68: test_misc_bit_twiddling_pop_count_unsigned_int OK 68: test_misc_bit_twiddling_pop_count_long OK 68: test_misc_bit_twiddling_pop_count_signed_long OK 68: test_misc_bit_twiddling_pop_count_unsigned_long OK 68: test_misc_bit_twiddling_pop_count_long_long OK 68: test_misc_bit_twiddling_pop_count_signed_long_long OK 68: test_misc_bit_twiddling_pop_count_unsigned_long_long OK 68: test_misc_bit_twiddling_pop_count_int8 OK 68: test_misc_bit_twiddling_pop_count_uint8 OK 68: test_misc_bit_twiddling_pop_count_int16 OK 68: test_misc_bit_twiddling_pop_count_uint16 OK 68: test_misc_bit_twiddling_pop_count_int32 OK 68: test_misc_bit_twiddling_pop_count_uint32 OK 68: test_misc_bit_twiddling_pop_count_int64 OK 68: test_misc_bit_twiddling_pop_count_uint64 OK 68: Interval_Tree__IntervalTreeTest_QueryAtBoundary OK 68: Interval_Tree__IntervalTreeTest_IntervalTree__int OK 68: Interval_Tree__IntervalTreeTest_IntervalTreeFromIterator__int OK 68: Interval_Tree__IntervalTreeTest_NonFullLength__int OK 68: Interval_Tree__IntervalTreeTest_AddInterval__int OK 68: Interval_Tree__IntervalTreeTest_TreeStructure__int OK 68: Interval_Tree__IntervalTreeTest_FindIntervalExcludeTouching__int OK 68: Interval_Tree__IntervalTreeTest_FindNoInterval__int OK 68: Interval_Tree__IntervalTreeTest_GraphMap__int_ComputeCenter_StoreIntervals OK 68: Interval_Tree__IntervalTreeTest_FindIntervalsIntervals__int_ComputeCenter OK 68: test_misc_accumulators_average_accumulator_int_average OK 68: test_misc_accumulators_average_accumulator_int_count OK 68: test_misc_accumulators_average_accumulator_int_sum OK 68: test_misc_accumulators_average_accumulator_int_clear OK 68: test_misc_accumulators_average_accumulator_double_average OK 68: test_misc_accumulators_average_accumulator_double_count OK 68: test_misc_accumulators_average_accumulator_double_sum OK 68: test_misc_accumulators_average_accumulator_double_clear OK 68: test_misc_edit_environment_string_enumerator_hamming OK 68: test_misc_edit_environment_string_enumerator_iterator_hamming OK 68: test_misc_edit_environment_string_enumerator_edit OK 68: test_misc_edit_environment_string_enumerator_iterator_edit OK 68: ************************************** 68: Total Tests: 46 68: Skipped: 0 68: Errors: 0 68: ************************************** 64/397 Test #68: test_test_misc .................................................................... Passed 0.07 sec test 69 Start 69: test_test_modifier 69: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_modifier 69: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier 69: Test timeout computed to be: 10000000 69: TEST SUITE test_modifier 69: SEQAN_ENABLE_DEBUG == 1 69: SEQAN_ENABLE_TESTING == 1 69: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 69: SEQAN_ASYNC_IO == 1 69: test_modifer_shortcuts_dna_string_reverse OK 69: test_modifer_shortcuts_dna5_string_reverse OK 69: test_modifer_shortcuts_rna_string_reverse OK 69: test_modifer_shortcuts_rna5_string_reverse OK 69: test_modifer_shortcuts_dna_string_complement OK 69: test_modifer_shortcuts_dna5_string_complement OK 69: test_modifer_shortcuts_rna_string_complement OK 69: test_modifer_shortcuts_rna5_string_complement OK 69: test_modifer_shortcuts_dna_string_reverse_complement OK 69: test_modifer_shortcuts_dna5_string_reverse_complement OK 69: test_modifer_shortcuts_rna_string_reverse_complement OK 69: test_modifer_shortcuts_rna5_string_reverse_complement OK 69: test_modifer_shortcuts_complement_in_place_string OK 69: test_modifer_shortcuts_complement_in_place_string_set OK 69: test_modifer_shortcuts_reverse_complement_in_place_string OK 69: test_modifer_shortcuts_reverse_complement_in_place_string_set OK 69: test_modifer_shortcuts_reverse_in_place_string OK 69: test_modifer_shortcuts_reverse_in_place_string_set OK 69: test_modifier_reverse_iterator_metafunctions OK 69: test_modifer_shortcuts_to_lower_in_place_string OK 69: test_modifer_shortcuts_to_lower_in_place_string_set OK 69: test_modifer_shortcuts_to_upper_in_place_string OK 69: test_modifer_shortcuts_to_upper_in_place_string_set OK 69: test_modifier_functors_functor_upcase OK 69: test_modifier_functors_functor_lowcase OK 69: test_modifier_functors_dna_complement OK 69: test_modifier_alphabet_size_metafunctions OK 69: test_modifier_DnaQ OK 69: test_modifier_alphabet_enumerate OK 69: test_modifier_alphabet_convert OK 69: test_modifier_alphabet_ord_value OK 69: test_modifier_view_iterator_metafunctions OK 69: test_modifier_view_iterator OK 69: test_modifier_view_string_caesar_chiffre OK 69: test_modifier_view_string_upper_case OK 69: test_modifier_view_string_low_case OK 69: test_modifier_view_string_alphabet_conversion OK 69: test_modifier_view_string_nested_modifier OK 69: test_modifier_convert_in_place OK 69: test_modifier_modified_string_metafunctions OK 69: test_modifier_modified_string_construct OK 69: test_modifier_modified_string_assignment OK 69: test_modifier_modified_string_length OK 69: test_modifier_modified_string_cascade OK 69: test_modifier_modified_iterator_construct OK 69: test_modifier_modified_string_mod_view OK 69: test_modifier_modified_string_mod_view_segment OK 69: test_modifier_modified_string_mod_pos OK 69: test_modifier_modified_string_const_literal OK 69: test_modifier_modified_string_reverse_segment OK 69: test_modifier_minimal OK 69: test_modifier_reverse_back_front OK 69: test_modified_string_padding_construction OK 69: test_modified_string_padding_expand OK 69: test_modified_string_padding_length OK 69: test_modified_string_padding_begin OK 69: test_modified_string_padding_end OK 69: test_modified_string_padding_difference OK 69: test_modified_string_padding_iterator OK 69: test_modified_string_padding_defect_2190 OK 69: ************************************** 69: Total Tests: 60 69: Skipped: 0 69: Errors: 0 69: ************************************** 65/397 Test #69: test_test_modifier ................................................................ Passed 0.58 sec test 70 Start 70: test_test_modifier_cyclic_shape 70: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_modifier_cyclic_shape 70: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/modifier_cyclic_shape 70: Test timeout computed to be: 10000000 67: .................................................................................................... 67: test_map_map OK 67: ************************************** 67: Total Tests: 1 67: Skipped: 0 67: Errors: 0 67: ************************************** 66/397 Test #67: test_test_map ..................................................................... Passed 1.14 sec test 71 Start 71: test_test_multiple_translation_units 71: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_multiple_translation_units 71: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/multiple_translation_units 71: Test timeout computed to be: 10000000 70: TEST SUITE test_modifier_cyclic_shape 70: SEQAN_ENABLE_DEBUG == 1 70: SEQAN_ENABLE_TESTING == 1 70: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 70: SEQAN_ASYNC_IO == 1 70: test_modifier_cyclic_shape_cyclic_shape OK 70: test_modifier_cyclic_shape_iterator_generic_alloc_charstring OK 70: test_modifier_cyclic_shape_iterator_generic_mod_charstring OK 70: test_modifier_cyclic_shape_iterator_generic_infix_charstring OK 70: test_modifier_cyclic_shape_iterator_fixed_alloc_charstring OK 70: test_modifier_cyclic_shape_iterator_fixed_mod_charstring OK 70: test_modifier_cyclic_shape_iterator_fixed_infix_charstring OK 70: test_modifier_cyclic_shape_modified_string_construct OK 70: test_modifier_cyclic_shape_modified_string_functions OK 70: test_modifier_cyclic_shape_modified_iterator OK 70: ************************************** 70: Total Tests: 10 70: Skipped: 0 70: Errors: 0 70: ************************************** 67/397 Test #70: test_test_modifier_cyclic_shape ................................................... Passed 0.07 sec test 72 Start 72: test_test_parallel 72: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_parallel 72: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parallel 72: Test timeout computed to be: 10000000 72: TEST SUITE test_parallel 72: SEQAN_ENABLE_DEBUG == 1 72: SEQAN_ENABLE_TESTING == 1 72: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 72: SEQAN_ASYNC_IO == 1 72: PARALLELISM ENABLED (CTEST_FULL_OUTPUT) 71: TEST SUITE test_multiple_translation_units 71: SEQAN_ENABLE_DEBUG == 1 71: SEQAN_ENABLE_TESTING == 1 71: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 71: SEQAN_ASYNC_IO == 1 71: ************************************** 71: Total Tests: 0 71: Skipped: 0 71: Errors: 0 71: ************************************** 68/397 Test #71: test_test_multiple_translation_units .............................................. Passed 0.02 sec test 73 Start 73: test_test_parse_lm 73: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_parse_lm 73: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/parse_lm 73: Test timeout computed to be: 10000000 72: test_parallel_atomic_inc OK 73: TEST SUITE test_parse_lm 73: SEQAN_ENABLE_DEBUG == 1 73: SEQAN_ENABLE_TESTING == 1 73: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 73: SEQAN_ASYNC_IO == 1 73: test_parse_lm_local_match_constructor OK 73: test_parse_lm_local_match_store_constructor OK 73: test_parse_lm_local_match_store_append_local_match OK 73: test_parse_lm_parse_lastz_general OK 73: test_parse_lm_parse_blastn_tabular OK 73: test_parse_lm_parse_stellar_gff OK 73: ************************************** 73: Total Tests: 6 73: Skipped: 0 73: Errors: 0 73: ************************************** 69/397 Test #73: test_test_parse_lm ................................................................ Passed 0.22 sec test 74 Start 74: test_test_pipe 74: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_pipe 74: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/pipe 74: Test timeout computed to be: 10000000 72: test_parallel_atomic_dec OK 72: test_parallel_atomic_add OK 74: TEST SUITE test_pipe 74: SEQAN_ENABLE_DEBUG == 1 74: SEQAN_ENABLE_TESTING == 1 74: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 74: SEQAN_ASYNC_IO == 1 56: BidirectionalFMIndexTest_SearchInStringSet type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 72: test_parallel_atomic_or OK 72: test_parallel_atomic_xor OK 72: test_parallel_atomic_cas OK 74: test_pipe_test_external_string OK 74: test_pipe_test_simple_pool OK 74: test_pipe_test_mapper OK 74: test_pipe_test_mapper_partially_filled OK 72: test_parallel_atomic_min OK 72: test_parallel_atomic_max OK 72: test_parallel_splitter_equidistant OK 72: test_parallel_splitting_compute_splitters OK 72: test_parallel_sum OK 72: test_parallel_partial_sum OK 72: test_parallel_queue_simple OK 72: test_parallel_queue_resize OK 72: test_parallel_queue_non_pod OK 72: threads: 2 72: writers: 1 74: test_pipe_test_sorter OK 74: test_pipe_sampler OK 74: test_pipe_tupler OK 74: test_pipe_tupler_multi OK 74: ************************************** 74: Total Tests: 8 74: Skipped: 0 74: Errors: 0 74: ************************************** 70/397 Test #74: test_test_pipe .................................................................... Passed 1.31 sec test 75 Start 75: test_test_platform 75: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_platform 75: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/platform 75: Test timeout computed to be: 10000000 75: TEST SUITE test_platform 75: SEQAN_ENABLE_DEBUG == 1 75: SEQAN_ENABLE_TESTING == 1 75: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 75: SEQAN_ASYNC_IO == 1 75: test_platform_range_based_for_loops1 OK 75: test_platform_range_based_for_loops2 OK 75: ************************************** 75: Total Tests: 2 75: Skipped: 0 75: Errors: 0 75: ************************************** 71/397 Test #75: test_test_platform ................................................................ Passed 0.01 sec test 76 Start 76: test_test_random 76: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_random 76: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/random 76: Test timeout computed to be: 10000000 76: TEST SUITE test_random 76: SEQAN_ENABLE_DEBUG == 1 76: SEQAN_ENABLE_TESTING == 1 76: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 76: SEQAN_ASYNC_IO == 1 76: test_default_rng OK 76: test_random_beta_constructors OK 76: test_random_beta_alpha OK 76: test_random_beta_beta OK 76: test_random_beta_min OK 76: test_random_beta_max OK 76: test_random_beta_param OK 76: test_random_beta_set_param OK 76: test_random_beta_write OK 76: test_random_beta_read OK 76: test_random_beta_functor OK 76: test_random_shuffle OK 76: test_random_cvt_beta_param OK 76: test_random_cvt_lognormal_param OK 76: ************************************** 76: Total Tests: 14 76: Skipped: 0 76: Errors: 0 76: ************************************** 72/397 Test #76: test_test_random .................................................................. Passed 0.04 sec test 77 Start 77: test_test_realign 77: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_realign 77: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/realign 77: Test timeout computed to be: 10000000 77: TEST SUITE test_realign 77: SEQAN_ENABLE_DEBUG == 1 77: SEQAN_ENABLE_TESTING == 1 77: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 77: SEQAN_ASYNC_IO == 1 77: test_realign_one_read_no_gaps OK 77: test_realign_one_read_with_gaps OK 77: test_realign_two_reads_stacked_at_beginning OK 77: test_realign_simple_case OK 72: stop reader #1 100000 72: throughput: 201554 values/s 72: cap: 30 72: test_parallel_queue_spsc_fixedsize OK 72: threads: 2 72: writers: 1 77: test_realign_simple_gaps OK 72: stop reader #1 100000 72: throughput: 4742057 values/s 72: cap: 76331 72: test_parallel_queue_spsc_dynamicsize OK 72: threads: 4 72: writers: 1 77: test_realign_simple_insert OK 77: test_realign_simple_insert_window OK 77: test_realign_simple_insert_window_tight_left OK 77: test_realign_simple_insert_window_tight_right OK 77: test_realign_tricky_insert_window_cuts OK 77: ************************************** 77: Total Tests: 10 77: Skipped: 0 77: Errors: 0 77: ************************************** 73/397 Test #77: test_test_realign ................................................................. Passed 0.38 sec test 78 Start 78: test_reduced_aminoacid 78: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_reduced_aminoacid 78: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/reduced_aminoacid 78: Test timeout computed to be: 10000000 72: stop reader #1 30243 72: stop reader #3 27070 72: stop reader #2 42687 72: throughput: 1166886 values/s 72: cap: 30 72: test_parallel_queue_spmc_fixedsize OK 72: threads: 4 72: writers: 1 72: stop reader #2 10362 72: stop reader #3 0 72: stop reader #1 89638 72: throughput: 6319116 values/s 72: cap: 76331 72: test_parallel_queue_spmc_dynamicsize OK 72: threads: 3 72: writers: 2 78: TEST SUITE test_reduced_aminoacid 78: SEQAN_ENABLE_DEBUG == 1 78: SEQAN_ENABLE_TESTING == 1 78: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 78: SEQAN_ASYNC_IO == 1 78: test_reduced_aminoacid_buchfink11 OK 78: test_reduced_aminoacid_cannata10 OK 78: test_reduced_aminoacid_li10 OK 78: test_reduced_aminoacid_solis10 OK 78: test_reduced_aminoacid_murphy5 OK 78: test_reduced_aminoacid_murphy10 OK 78: test_reduced_aminoacid_murphy10_moditerators OK 72: stop reader #2 100000 72: throughput: 589001 values/s 72: cap: 30 72: test_parallel_queue_mpsc_fixedsize OK 72: test_parallel_thread_pool_construct OK 72: test_parallel_thread_pool_spawn OK 78: test_reduced_aminoacid_murphy10_modview_fmindex OK 78: ************************************** 78: Total Tests: 8 78: Skipped: 0 78: Errors: 0 78: ************************************** 74/397 Test #78: test_reduced_aminoacid ............................................................ Passed 0.39 sec test 79 Start 79: test_test_rna_io 79: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_rna_io 79: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/rna_io 79: Test timeout computed to be: 10000000 79: TEST SUITE test_rna_io 79: SEQAN_ENABLE_DEBUG == 1 79: SEQAN_ENABLE_TESTING == 1 79: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 79: SEQAN_ASYNC_IO == 1 79: test_rna_io_read_connect OK 79: test_rna_io_read_dot_bracket OK 79: test_rna_io_read_vienna OK 79: test_rna_io_read_stockholm OK 79: test_rna_io_read_bpseq OK 79: test_rna_io_read_ebpseq OK 79: test_rna_io_write_connect OK 79: test_rna_io_write_dot_bracket OK 79: test_rna_io_write_vienna OK 79: test_rna_io_write_stockholm OK 79: test_rna_io_write_bpseq OK 79: test_rna_io_write_ebpseq OK 79: test_rna_io_convert OK 79: ************************************** 79: Total Tests: 13 79: Skipped: 0 79: Errors: 0 79: ************************************** 75/397 Test #79: test_test_rna_io .................................................................. Passed 0.34 sec test 80 Start 80: test_test_roi_io 80: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_roi_io 80: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/roi_io 80: Test timeout computed to be: 10000000 80: TEST SUITE test_roi_io 80: SEQAN_ENABLE_DEBUG == 1 80: SEQAN_ENABLE_TESTING == 1 80: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 80: SEQAN_ASYNC_IO == 1 80: test_roi_read_roi_record OK 80: test_roi_write_roi_record OK 80: test_roi_roi_file_read OK 80: test_roi_roi_file_write OK 80: test_roi_io_isOpen_fileIn OK 80: test_roi_io_isOpen_fileOut OK 80: ************************************** 80: Total Tests: 6 80: Skipped: 0 80: Errors: 0 80: ************************************** 76/397 Test #80: test_test_roi_io .................................................................. Passed 0.07 sec test 81 Start 81: test_test_score 81: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_score 81: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/score 81: Test timeout computed to be: 10000000 81: TEST SUITE test_score 81: SEQAN_ENABLE_DEBUG == 1 81: SEQAN_ENABLE_TESTING == 1 81: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 81: SEQAN_ASYNC_IO == 1 81: test_score_gap_open OK 81: test_score_simple OK 81: test_score_edit OK 81: test_score_matrix OK 81: test_score_matrix_file OK 81: test_score_matrix_data OK 81: test_score_sequence_entry_for_score OK 81: test_score_dynamic_score_matrix OK 81: ************************************** 81: Total Tests: 8 81: Skipped: 0 81: Errors: 0 81: ************************************** 77/397 Test #81: test_test_score ................................................................... Passed 0.33 sec test 82 Start 82: test_test_seeds_combination 82: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_combination 82: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 82: Test timeout computed to be: 10000000 82: TEST SUITE test_seeds_combination 82: SEQAN_ENABLE_DEBUG == 1 82: SEQAN_ENABLE_TESTING == 1 82: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 82: SEQAN_ASYNC_IO == 1 82: test_seeds_combination_seeds_combineable_merge_chained OK 82: test_seeds_combination_seeds_combineable_simple_chaining_chained OK 82: test_seeds_combination_seeds_combineable_simple_chaos_chaining_chained OK 82: test_seeds_combination_combine_seeds_merge_chained OK 82: test_seeds_combination_combine_seeds_simple_chaining_chained OK 82: test_seeds_combination_combine_seeds_simple_chaos_chaining_chained OK 82: ************************************** 82: Total Tests: 6 82: Skipped: 0 82: Errors: 0 82: ************************************** 78/397 Test #82: test_test_seeds_combination ....................................................... Passed 0.01 sec test 83 Start 83: test_test_seeds_extension 83: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_extension 83: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 83: Test timeout computed to be: 10000000 72: test_parallel_thread_pool_join OK 56: BidirectionalFMIndexTest_SearchInStringSet type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 83: TEST SUITE test_seeds_extension 83: SEQAN_ENABLE_DEBUG == 1 83: SEQAN_ENABLE_TESTING == 1 83: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 83: SEQAN_ASYNC_IO == 1 83: test_seeds_extension_match_extension_simple OK 83: test_seeds_extension_ungapped_xdrop_extension_simple OK 83: test_seeds_extension_gapped_xdrop_extension_simple OK 83: test_seeds_extension_match_extension_chained OK 83: test_seeds_extension_ungapped_xdrop_extension_chained OK 83: ************************************** 83: Total Tests: 5 83: Skipped: 0 83: Errors: 0 83: ************************************** 79/397 Test #83: test_test_seeds_extension ......................................................... Passed 0.15 sec test 84 Start 84: test_test_seeds_global_chaining 84: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_global_chaining 84: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 84: Test timeout computed to be: 10000000 84: TEST SUITE test_seeds_global_chaining 84: SEQAN_ENABLE_DEBUG == 1 84: SEQAN_ENABLE_TESTING == 1 84: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 84: SEQAN_ASYNC_IO == 1 84: test_seeds_global_chaining_sparse_length OK 84: ************************************** 84: Total Tests: 1 84: Skipped: 0 84: Errors: 0 84: ************************************** 80/397 Test #84: test_test_seeds_global_chaining ................................................... Passed 0.10 sec test 85 Start 85: test_test_seeds_seed_base 85: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_seed_base 85: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 85: Test timeout computed to be: 10000000 85: TEST SUITE test_seeds_seed_base 85: SEQAN_ENABLE_DEBUG == 1 85: SEQAN_ENABLE_TESTING == 1 85: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 85: SEQAN_ASYNC_IO == 1 85: test_seeds_seed_base_constructors_simple OK 85: test_seeds_seed_base_metafunctions_simple OK 85: test_seeds_seed_base_getters_setters_simple OK 85: test_seeds_seed_base_basic_functions_simple OK 85: test_seeds_seed_base_assign_simple OK 85: test_seeds_seed_base_constructors_chained OK 85: test_seeds_seed_base_metafunctions_chained OK 85: test_seeds_seed_base_getters_setters_chained OK 85: test_seeds_seed_base_basic_functions_chained OK 85: test_seeds_seed_base_assign_chained OK 85: ************************************** 85: Total Tests: 10 85: Skipped: 0 85: Errors: 0 85: ************************************** 81/397 Test #85: test_test_seeds_seed_base ......................................................... Passed 0.07 sec test 86 Start 86: test_test_seeds_seed_chained 86: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_seed_chained 86: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 86: Test timeout computed to be: 10000000 86: TEST SUITE test_seeds_seed_chained 86: SEQAN_ENABLE_DEBUG == 1 86: SEQAN_ENABLE_TESTING == 1 86: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 86: SEQAN_ASYNC_IO == 1 86: test_seeds_seed_chained_assign OK 86: test_seeds_seed_chained_metafunctions OK 86: test_seeds_seed_chained_append_diagonal OK 86: test_seeds_seed_chained_truncate_diagonals OK 86: test_seeds_seed_chained_iterators OK 86: test_seeds_seed_chained_front_back OK 86: ************************************** 86: Total Tests: 6 86: Skipped: 0 86: Errors: 0 86: ************************************** 82/397 Test #86: test_test_seeds_seed_chained ...................................................... Passed 0.07 sec test 87 Start 87: test_test_seeds_seed_diagonal 87: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_seed_diagonal 87: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 87: Test timeout computed to be: 10000000 87: TEST SUITE test_seeds_seed_diagonal 87: SEQAN_ENABLE_DEBUG == 1 87: SEQAN_ENABLE_TESTING == 1 87: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 87: SEQAN_ASYNC_IO == 1 87: test_seeds_seed_diagonal_constructors OK 87: test_seeds_seed_diagonal_metafunctions OK 87: ************************************** 87: Total Tests: 2 87: Skipped: 0 87: Errors: 0 87: ************************************** 83/397 Test #87: test_test_seeds_seed_diagonal ..................................................... Passed 0.09 sec test 88 Start 88: test_test_seeds_seed_set_base 88: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_seed_set_base 88: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 88: Test timeout computed to be: 10000000 88: TEST SUITE test_seeds_seed_set_base 88: SEQAN_ENABLE_DEBUG == 1 88: SEQAN_ENABLE_TESTING == 1 88: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 88: SEQAN_ASYNC_IO == 1 88: test_seeds_seed_set_base_container_functions_simple_unordered OK 88: test_seeds_seed_set_base_clear_simple OK 88: test_seeds_seed_set_base_clear_chained OK 88: test_seeds_seed_set_base_add_seed_single_threshold_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_not_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_reached_score_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_not_reached_score_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_right_merging_possible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_impossible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_not_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_not_reached_scored_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_reached_scored_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_left_chaining_possible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_right_chaining_possible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_left_chaining_impossible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_left_chaining_possible_threshold_not_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_left_chaining_possible_threshold_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_left_chaining_possible_threshold_not_reached_scored_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_simple_chain_left_chaining_possible_threshold_reached_scored_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_right_chaining_possible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_impossible_no_threshold_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_not_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_reached_length_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_not_reached_scored_simple_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_reached_scored_simple_unordered OK 88: test_seeds_seed_set_base_container_functions_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_not_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_reached_score_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_single_threshold_not_reached_score_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_right_merging_possible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_impossible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_not_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_not_reached_scored_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_merge_left_merging_possible_threshold_reached_scored_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_left_chaining_possible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_right_chaining_possible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_left_chaining_impossible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_left_chaining_possible_threshold_not_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_left_chaining_possible_threshold_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_left_chaining_possible_threshold_not_reached_scored_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chained_chain_left_chaining_possible_threshold_reached_scored_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_right_chaining_possible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_impossible_no_threshold_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_not_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_reached_length_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_not_reached_scored_chained_unordered OK 88: test_seeds_seed_set_base_add_seed_chaos_left_chaining_possible_threshold_reached_scored_chained_unordered OK 88: ************************************** 88: Total Tests: 54 88: Skipped: 0 88: Errors: 0 88: ************************************** 84/397 Test #88: test_test_seeds_seed_set_base ..................................................... Passed 0.12 sec test 89 Start 89: test_test_seeds_seed_set_unordered 89: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_seed_set_unordered 89: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 89: Test timeout computed to be: 10000000 89: TEST SUITE test_seeds_seed_set 89: SEQAN_ENABLE_DEBUG == 1 89: SEQAN_ENABLE_TESTING == 1 89: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 89: SEQAN_ASYNC_IO == 1 89: test_seeds_seed_set_container_functions_unordered OK 89: ************************************** 89: Total Tests: 1 89: Skipped: 0 89: Errors: 0 89: ************************************** 85/397 Test #89: test_test_seeds_seed_set_unordered ................................................ Passed 0.10 sec test 90 Start 90: test_test_seeds_align_banded_chain_impl 90: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_align_banded_chain_impl 90: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 90: Test timeout computed to be: 10000000 90: TEST SUITE test_banded_chain_impl 90: SEQAN_ENABLE_DEBUG == 1 90: SEQAN_ENABLE_TESTING == 1 90: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 90: SEQAN_ASYNC_IO == 1 90: test_banded_chain_alignment_empty_set_linear OK 90: test_banded_chain_alignment_empty_set_affine OK 15: test_bam_io_bam_file_bam_file_seek OK 15: test_bam_io_sam_file_issue_489 OK 15: test_bam_io_bam_index_save OK 15: test_bam_io_bam_index_open OK 15: ************************************** 15: Total Tests: 107 15: Skipped: 0 15: Errors: 0 15: ************************************** 86/397 Test #15: test_test_bam_io .................................................................. Passed 11.82 sec test 91 Start 91: test_test_seeds_banded_chain_alignment_interface 91: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seeds_banded_chain_alignment_interface 91: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seeds 91: Test timeout computed to be: 10000000 90: test_banded_chain_alignment_one_seed_linear OK 90: test_banded_chain_alignment_one_seed_affine OK 90: test_banded_chain_alignment_two_seeds_linear OK 90: test_banded_chain_alignment_two_seeds_affine OK 90: test_banded_chain_alignment_three_seeds_linear OK 90: test_banded_chain_alignment_three_seeds_affine OK 90: test_banded_chain_alignment_special_seeds_linear OK 90: test_banded_chain_alignment_special_seeds_affine OK 91: TEST SUITE test_banded_chain_alignment_interface 91: SEQAN_ENABLE_DEBUG == 1 91: SEQAN_ENABLE_TESTING == 1 91: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 91: SEQAN_ASYNC_IO == 1 90: test_banded_chain_alignment_band_extensions_linear OK 90: test_banded_chain_alignment_band_extensions_affine OK 90: test_banded_chain_alignment_issue_1020 OK 90: test_banded_chain_score_overflow_detection OK 90: ************************************** 90: Total Tests: 14 90: Skipped: 0 90: Errors: 0 90: ************************************** 87/397 Test #90: test_test_seeds_align_banded_chain_impl ........................................... Passed 0.95 sec test 92 Start 92: test_test_seq_io 92: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_seq_io 92: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/seq_io 92: Test timeout computed to be: 10000000 92: TEST SUITE test_seq_io 92: SEQAN_ENABLE_DEBUG == 1 92: SEQAN_ENABLE_TESTING == 1 92: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 92: SEQAN_ASYNC_IO == 1 92: test_seq_io_sequence_file_recognize_file_type_gz_fasta OK 92: test_seq_io_sequence_file_recognize_file_type_bz2_fasta OK 92: test_seq_io_sequence_file_recognize_file_format_text_fasta OK 92: test_seq_io_sequence_file_recognize_file_format_text_fastq OK 92: test_tag_select_intersect OK 92: test_seq_io_sequence_file_read_record_text_fasta OK 92: test_seq_io_sequence_file_read_all_text_fasta OK 92: test_seq_io_sequence_file_write_record_text_fasta OK 92: test_seq_io_sequence_file_write_all_text_fasta OK 92: test_seq_io_sequence_file_write_record_text_fastq_no_qual OK 92: test_seq_io_sequence_file_write_record_text_fastq_with_qual OK 92: test_seq_io_sequence_file_write_all_text_fastq_no_qual OK 92: test_seq_io_sequence_file_write_all_text_fastq_with_qual OK 92: test_seq_io_sequence_file_isOpen_fileIn OK 92: test_seq_io_sequence_file_isOpen_fileOut OK 92: test_seq_io_genomic_region_default_constructed OK 92: test_seq_io_genomic_region_from_string OK 92: test_seq_io_genomic_region_clear OK 92: test_seq_io_genomic_region_parse_chrom OK 92: test_seq_io_genomic_region_parse_chrom_begin OK 92: test_seq_io_genomic_region_parse_chrom_begin_end OK 92: test_seq_io_genomic_region_to_string_interval OK 92: test_seq_io_genomic_region_to_string_point OK 91: test_banded_chain_alignment_align_linear_global_one_score OK 91: test_banded_chain_alignment_align_linear_global_two_scores OK 92: test_seq_io_genomic_fai_index_build OK 91: test_banded_chain_alignment_align_linear_semi_one_score OK 91: test_banded_chain_alignment_align_linear_semi_two_scores OK 92: test_seq_io_genomic_fai_index_write OK 92: test_seq_io_genomic_fai_index_read OK 92: test_seq_io_genomic_fai_index_read_sequence OK 92: test_seq_io_genomic_fai_index_read_region OK 92: test_stream_read_embl_single_char_array_stream OK 92: test_stream_read_embl_record_char_array_stream OK 92: test_stream_read_embl_single_mmap OK 91: test_banded_chain_alignment_align_linear_overlap_one_score OK 91: test_banded_chain_alignment_align_linear_overlap_two_scores OK 92: test_stream_read_embl_single_batch_mmap OK 92: test_stream_read_genbank_single_char_array_stream OK 92: test_stream_read_genbank_record_char_array_stream OK 72: test_parallel_thread_pool_destruct OK 72: test_parallel_enumerable_thread_local_construct OK 72: test_parallel_enumerable_thread_local_local OK 92: test_stream_read_genbank_single_mmap OK 72: test_parallel_enumerable_thread_local_enumerate OK 72: test_parallel_enumerable_thread_local_combine_unary OK 72: test_parallel_enumerable_thread_local_combine_binary OK 72: ************************************** 72: Total Tests: 29 72: Skipped: 0 72: Errors: 0 72: ************************************** 88/397 Test #72: test_test_parallel ................................................................ Passed 5.26 sec test 93 Start 93: test_test_sequence 93: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_sequence 93: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence 93: Test timeout computed to be: 10000000 92: test_stream_read_genbank_single_batch_mmap OK 92: test_seq_io_bam_file_sam_read_sequences OK 92: test_seq_io_bam_file_sam_read_sequences_and_qualities OK 92: test_seq_io_bam_file_sam_write_sequences OK 92: test_seq_io_bam_file_sam_write_sequences_and_qualities OK 91: test_banded_chain_alignment_align_affine_global_one_score OK 91: test_banded_chain_alignment_align_affine_global_two_scores OK 92: test_seq_io_bam_file_bam_read_sequences OK 92: test_seq_io_bam_file_bam_read_sequences_and_qualities OK 92: test_seq_io_bam_file_bam_write_sequences OK 92: test_seq_io_bam_file_bam_write_sequences_and_qualities OK 92: ************************************** 92: Total Tests: 44 92: Skipped: 0 92: Errors: 0 92: ************************************** 89/397 Test #92: test_test_seq_io .................................................................. Passed 0.61 sec test 94 Start 94: test_test_sequence_v2 94: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_sequence_v2 94: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence 94: Test timeout computed to be: 10000000 93: TEST SUITE Sequence tests 93: SEQAN_ENABLE_DEBUG == 1 93: SEQAN_ENABLE_TESTING == 1 93: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 93: SEQAN_ASYNC_IO == 1 93: test_sequence_adaptions_metafunctions_std_string OK 93: test_sequence_adaptions_iterators_std_string OK 93: test_sequence_adaptions_sequence_interface_std_string OK 93: test_sequence_adaptions_sequence_memory_std_string OK 93: test_sequence_adaptions_metafunctions_std_vector OK 93: test_sequence_adaptions_iterators_std_vector OK 93: test_sequence_adaptions_sequence_interface_std_vector OK 93: test_sequence_adaptions_sequence_memory_std_vector OK 93: test_sequence_adaptions_metafunctions_std_array OK 93: test_sequence_adaptions_iterators_std_array OK 93: test_sequence_adaptions_sequence_interface_std_array OK 93: test_sequence_adaptions_metafunctions_std_list OK 93: test_sequence_adaptions_iterators_std_list OK 93: test_sequence_adaptions_sequence_interface_std_list OK 93: Sequence_Interface OK 91: test_banded_chain_alignment_align_affine_semi_one_score OK 91: test_banded_chain_alignment_align_affine_semi_two_scores OK 91: test_banded_chain_alignment_align_affine_overlap_one_score OK 91: test_banded_chain_alignment_align_affine_overlap_two_scores OK 91: test_banded_chain_alignment_gaps_linear_global_one_score OK 91: test_banded_chain_alignment_gaps_linear_global_two_score OK 93: String_Base OK 93: String_Alloc OK 93: String_Array OK 93: String_Stack OK 93: String_Pointer OK 93: String_CStyle OK 91: test_banded_chain_alignment_gaps_linear_semi_one_score OK 91: test_banded_chain_alignment_gaps_linear_semi_two_score OK 93: String_Packed OK 93: Std_String OK 93: Lexical OK 93: Combinatoric OK 93: Segment OK 93: StringSet_Owner_Default OK 93: StringSet_Concat_Owner_Default OK 93: StringSet_Concat_Owner_ConcatDirect OK 93: StringSet_Id_Dependent_Tight OK 93: StringSet_Id_Dependent_Generous OK 93: StringSetIdHolder_Char_Dependent_Tight OK 93: StringSetIdHolder_Char_Dependent_Generous OK 93: Infix OK 93: Suffix OK 93: ticket317 OK 93: ticket848 OK 93: DEFAULT CONSTRUCTING TestContainer 0xffe17624 93: string.data_begin 0x572de630 93: COPY CONSTRUCTING TestContainer 0xffe17630 93: other 0xffe17624 93: string.data_begin 0x572deb60 93: COPY CONSTRUCTING TestContainer 0x572de280 93: other 0xffe17630 93: string.data_begin 0x572ddac0 93: DECONSTRUCTING TestContainer 0xffe17630 93: string.data_begin 0x572deb60 93: DECONSTRUCTING TestContainer 0xffe17624 93: string.data_begin 0x572de630 93: DECONSTRUCTING TestContainer 0x572de280 93: string.data_begin 0x572ddac0 93: test_find_motif_memory_leak_ticket_364 OK 93: ticket901 OK 91: test_banded_chain_alignment_gaps_linear_overlap_one_score OK 91: test_banded_chain_alignment_gaps_linear_overlap_two_score OK 91: test_banded_chain_alignment_gaps_affine_global_one_score OK 91: test_banded_chain_alignment_gaps_affine_global_two_scores OK 56: BidirectionalFMIndexTest_SearchInStringSet type parameter seqan::Index >, seqan::BidirectionalIndex > > > OK 93: ticket1108 OK 93: String_Packed_Extension OK 93: ************************************** 93: Total Tests: 41 93: Skipped: 0 93: Errors: 0 93: ************************************** 94: TEST SUITE tests 94: SEQAN_ENABLE_DEBUG == 1 94: SEQAN_ENABLE_TESTING == 1 94: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 94: SEQAN_ASYNC_IO == 1 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter seqan::String > OK 94: StringTestCommon_DefaultConstructible type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_DefaultConstructible type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_DefaultConstructible type parameter std::vector, std::allocator > > OK 94: StringTestCommon_DefaultConstructible type parameter std::vector > OK 94: StringTestCommon_DefaultConstructible type parameter std::vector > OK 94: StringTestCommon_DefaultConstructible type parameter std::vector > OK 94: StringTestCommon_DefaultConstructible type parameter std::deque, std::allocator > > OK 94: StringTestCommon_DefaultConstructible type parameter std::deque > OK 94: StringTestCommon_DefaultConstructible type parameter std::deque > OK 94: StringTestCommon_DefaultConstructible type parameter std::deque > OK 94: StringTestCommon_DefaultConstructible type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_DefaultConstructible type parameter std::forward_list > OK 94: StringTestCommon_DefaultConstructible type parameter std::forward_list > OK 94: StringTestCommon_DefaultConstructible type parameter std::forward_list > OK 94: StringTestCommon_DefaultConstructible type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_DefaultConstructible type parameter std::__cxx11::list > OK 94: StringTestCommon_DefaultConstructible type parameter std::__cxx11::list > OK 94: StringTestCommon_DefaultConstructible type parameter std::__cxx11::list > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String >, 4194304u, 2u> > > OK 91: test_banded_chain_alignment_gaps_affine_semi_one_score OK 91: test_banded_chain_alignment_gaps_affine_semi_two_scores OK 91: test_banded_chain_alignment_gaps_affine_overlap_one_score OK 91: test_banded_chain_alignment_gaps_affine_overlap_two_scores OK 91: test_banded_chain_alignment_alignmentgraph_linear_global_one_score OK 91: test_banded_chain_alignment_alignmentgraph_linear_global_two_scores OK 91: test_banded_chain_alignment_alignmentgraph_linear_semi_one_score OK 91: test_banded_chain_alignment_alignmentgraph_linear_semi_two_scores OK 91: test_banded_chain_alignment_alignmentgraph_linear_overlap_one_score OK 91: test_banded_chain_alignment_alignmentgraph_linear_overlap_two_scores OK 91: test_banded_chain_alignment_alignmentgraph_affine_global_one_score OK 91: test_banded_chain_alignment_alignmentgraph_affine_global_two_scores OK 91: test_banded_chain_alignment_alignmentgraph_affine_semi_one_score OK 91: test_banded_chain_alignment_alignmentgraph_affine_semi_two_scores OK 91: test_banded_chain_alignment_alignmentgraph_affine_overlap_one_score OK 91: test_banded_chain_alignment_alignmentgraph_affine_overlap_two_scores OK 90/397 Test #93: test_test_sequence ................................................................ Passed 0.62 sec test 95 Start 95: test_test_stringset_v2 95: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_stringset_v2 95: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence 95: Test timeout computed to be: 10000000 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String >, unsigned int> > > OK 91: test_banded_chain_alignment_fragments_linear_global_one_score OK 91: test_banded_chain_alignment_fragments_linear_global_two_scores OK 94: StringTestCommon_CopyConstructible type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter seqan::String > OK 94: StringTestCommon_CopyConstructible type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_CopyConstructible type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_CopyConstructible type parameter std::vector, std::allocator > > OK 94: StringTestCommon_CopyConstructible type parameter std::vector > OK 94: StringTestCommon_CopyConstructible type parameter std::vector > OK 94: StringTestCommon_CopyConstructible type parameter std::vector > OK 94: StringTestCommon_CopyConstructible type parameter std::deque, std::allocator > > OK 94: StringTestCommon_CopyConstructible type parameter std::deque > OK 94: StringTestCommon_CopyConstructible type parameter std::deque > OK 94: StringTestCommon_CopyConstructible type parameter std::deque > OK 94: StringTestCommon_CopyConstructible type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_CopyConstructible type parameter std::forward_list > OK 94: StringTestCommon_CopyConstructible type parameter std::forward_list > OK 94: StringTestCommon_CopyConstructible type parameter std::forward_list > OK 94: StringTestCommon_CopyConstructible type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_CopyConstructible type parameter std::__cxx11::list > OK 94: StringTestCommon_CopyConstructible type parameter std::__cxx11::list > OK 94: StringTestCommon_CopyConstructible type parameter std::__cxx11::list > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_LessOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_LessOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_LessOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 91: test_banded_chain_alignment_fragments_linear_semi_one_score OK 91: test_banded_chain_alignment_fragments_linear_semi_two_scores OK 94: StringTestCommon_LessOperator type parameter seqan::String >, unsigned int> > > OK 91: test_banded_chain_alignment_fragments_linear_overlap_one_score OK 91: test_banded_chain_alignment_fragments_linear_overlap_two_scores OK 91: test_banded_chain_alignment_fragments_affine_global_one_score OK 91: test_banded_chain_alignment_fragments_affine_global_two_scores OK 91: test_banded_chain_alignment_fragments_affine_semi_one_score OK 91: test_banded_chain_alignment_fragments_affine_semi_two_scores OK 91: test_banded_chain_alignment_fragments_affine_overlap_one_score OK 91: test_banded_chain_alignment_fragments_affine_overlap_two_scores OK 91: test_banded_chain_alignment_stl_vector_adaption OK 91: ************************************** 91: Total Tests: 49 91: Skipped: 0 91: Errors: 0 91: ************************************** 95: TEST SUITE tests 95: SEQAN_ENABLE_DEBUG == 1 95: SEQAN_ENABLE_TESTING == 1 95: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 95: SEQAN_ASYNC_IO == 1 91/397 Test #91: test_test_seeds_banded_chain_alignment_interface .................................. Passed 1.58 sec test 96 Start 96: test_test_sequence_journaled 96: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_sequence_journaled 96: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/sequence_journaled 96: Test timeout computed to be: 10000000 94: StringTestCommon_LessOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_LessOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_LessOperator type parameter seqan::String > > OK 94: StringTestCommon_LessOperator type parameter seqan::String > > OK 94: StringTestCommon_LessOperator type parameter seqan::String > > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter seqan::String > OK 94: StringTestCommon_LessOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_LessOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_LessOperator type parameter std::vector, std::allocator > > OK 94: StringTestCommon_LessOperator type parameter std::vector > OK 94: StringTestCommon_LessOperator type parameter std::vector > OK 94: StringTestCommon_LessOperator type parameter std::vector > OK 94: StringTestCommon_LessOperator type parameter std::deque, std::allocator > > OK 94: StringTestCommon_LessOperator type parameter std::deque > OK 94: StringTestCommon_LessOperator type parameter std::deque > OK 94: StringTestCommon_LessOperator type parameter std::deque > OK 94: StringTestCommon_LessOperator type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_LessOperator type parameter std::forward_list > OK 94: StringTestCommon_LessOperator type parameter std::forward_list > OK 94: StringTestCommon_LessOperator type parameter std::forward_list > OK 94: StringTestCommon_LessOperator type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_LessOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_LessOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_LessOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String >, unsigned int> > > OK 96: TEST SUITE test_sequence_journaled 96: SEQAN_ENABLE_DEBUG == 1 96: SEQAN_ENABLE_TESTING == 1 96: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 96: SEQAN_ASYNC_IO == 1 96: test_sequence_journaled_sorted_array_assign OK 96: test_sequence_journaled_sorted_array_set OK 96: test_sequence_journaled_sorted_array_host OK 96: test_sequence_journaled_sorted_array_clear OK 96: test_sequence_journaled_sorted_array_empty OK 96: test_sequence_journaled_sorted_array_erase_position OK 96: test_sequence_journaled_sorted_array_erase_begin_end OK 96: test_sequence_journaled_sorted_array_insert OK 96: test_sequence_journaled_sorted_array_insert_value OK 96: test_sequence_journaled_sorted_array_assign_value OK 96: test_sequence_journaled_sorted_array_subscript_operator OK 96: test_sequence_journaled_sorted_array_assign_infix OK 96: test_sequence_journaled_sorted_array_length OK 96: test_sequence_journaled_sorted_array_virtual_to_host_position OK 96: test_sequence_journaled_sorted_array_host_to_virtual_position OK 96: test_sequence_journaled_sorted_array_copy_constructor OK 96: test_sequence_journaled_sorted_array_begin_end_iterator OK 96: test_sequence_journaled_sorted_array_begin_end_const_iterator OK 96: test_sequence_journaled_sorted_array_subscript_operator_randomized OK 96: test_sequence_journaled_sorted_array_fuzzying OK 96: test_sequence_journaled_sorted_array_segments_read_only OK 96: test_sequence_journaled_sorted_array_segments_read_write OK 96: test_sequence_journaled_sorted_array_flatten OK 96: test_sequence_journaled_sorted_array_reset OK 96: test_sequence_journaled_sorted_array_iterator_sum OK 96: test_sequence_journaled_sorted_array_iterator_difference OK 96: test_sequence_journaled_sorted_array_iterator_relations OK 96: test_sequence_journaled_sorted_array_iterator_decrement OK 96: test_sequence_journaled_sorted_array_iterator_set_position OK 96: test_sequence_journaled_sorted_array_iterator_position OK 96: test_sequence_journaled_sorted_array_iterator_rooted_at_begin OK 96: test_sequence_journaled_sorted_array_iterator_rooted_at_end OK 96: test_sequence_journaled_sorted_array_iterator_rooted_go_begin OK 96: test_sequence_journaled_sorted_array_iterator_rooted_go_end OK 96: test_sequence_journaled_sorted_array_iterator_rooted_container OK 96: ************************************** 96: Total Tests: 35 96: Skipped: 0 96: Errors: 0 96: ************************************** 92/397 Test #96: test_test_sequence_journaled ...................................................... Passed 0.09 sec test 97 Start 97: test_test_simd_vector 97: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_simd_vector 97: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simd 97: Test timeout computed to be: 10000000 94: StringTestCommon_LessEqualOperator type parameter seqan::String >, unsigned int> > > OK 97: TEST SUITE test_simd_vector 97: SEQAN_ENABLE_DEBUG == 1 97: SEQAN_ENABLE_TESTING == 1 97: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 97: SEQAN_ASYNC_IO == 1 97: ************************************** 97: Total Tests: 0 97: Skipped: 0 97: Errors: 0 97: ************************************** 93/397 Test #97: test_test_simd_vector ............................................................. Passed 0.02 sec test 98 Start 98: test_test_simple_intervals_io 98: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_simple_intervals_io 98: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/simple_intervals_io 98: Test timeout computed to be: 10000000 94: StringTestCommon_LessEqualOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter seqan::String > OK 94: StringTestCommon_LessEqualOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_LessEqualOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_LessEqualOperator type parameter std::vector, std::allocator > > OK 94: StringTestCommon_LessEqualOperator type parameter std::vector > OK 94: StringTestCommon_LessEqualOperator type parameter std::vector > OK 94: StringTestCommon_LessEqualOperator type parameter std::vector > OK 94: StringTestCommon_LessEqualOperator type parameter std::deque, std::allocator > > OK 94: StringTestCommon_LessEqualOperator type parameter std::deque > OK 94: StringTestCommon_LessEqualOperator type parameter std::deque > OK 94: StringTestCommon_LessEqualOperator type parameter std::deque > OK 94: StringTestCommon_LessEqualOperator type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_LessEqualOperator type parameter std::forward_list > OK 94: StringTestCommon_LessEqualOperator type parameter std::forward_list > OK 94: StringTestCommon_LessEqualOperator type parameter std::forward_list > OK 94: StringTestCommon_LessEqualOperator type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_LessEqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_LessEqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_LessEqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String >, unsigned int> > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_CopyConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_DefaultConstructible type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Comparison type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Append type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String >, unsigned int> > > OK 98: TEST SUITE test_simple_intervals_io 98: SEQAN_ENABLE_DEBUG == 1 98: SEQAN_ENABLE_TESTING == 1 98: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 98: SEQAN_ASYNC_IO == 1 98: test_simple_intervals_io_read_records OK 98: test_simple_intervals_io_write_records OK 94: StringTestCommon_GreaterOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::Packed > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AppendValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Assign type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_AssignValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Back type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Begin type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_BeginPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Clear type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Concat type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_End type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EndPosition type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Erase type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_EraseBack type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Front type parameter seqan::StringSet >, seqan::Owner > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_GreaterOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_GreaterOperator type parameter std::vector, std::allocator > > OK 94: StringTestCommon_GreaterOperator type parameter std::vector > OK 94: StringTestCommon_GreaterOperator type parameter std::vector > OK 94: StringTestCommon_GreaterOperator type parameter std::vector > OK 94: StringTestCommon_GreaterOperator type parameter std::deque, std::allocator > > OK 94: StringTestCommon_GreaterOperator type parameter std::deque > OK 94: StringTestCommon_GreaterOperator type parameter std::deque > OK 94: StringTestCommon_GreaterOperator type parameter std::deque > OK 94: StringTestCommon_GreaterOperator type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_GreaterOperator type parameter std::forward_list > OK 94: StringTestCommon_GreaterOperator type parameter std::forward_list > OK 94: StringTestCommon_GreaterOperator type parameter std::forward_list > OK 94: StringTestCommon_GreaterOperator type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_GreaterOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_GreaterOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_GreaterOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 98: test_simple_intervals_io_smart_file_read OK 98: test_simple_intervals_io_smart_file_write OK 98: ************************************** 98: Total Tests: 4 98: Skipped: 0 98: Errors: 0 98: ************************************** 94/397 Test #98: test_test_simple_intervals_io ..................................................... Passed 0.07 sec test 99 Start 99: test_test_statistics 99: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_statistics 99: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/statistics 99: Test timeout computed to be: 10000000 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 95: StringSetTestCommon_GetValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet > >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet > >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet > >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet > >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValue type parameter seqan::StringSet >, seqan::Owner > > SKIPPED 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_GetValueById type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Insert type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InsertValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Iter type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Length type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Resize type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Value type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Infix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Prefix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_Suffix type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_InfixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_PrefixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet, seqan::Packed > >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet > >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet, seqan::Array<100u> >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet, seqan::Array<1000u> >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet, seqan::Alloc >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: StringSetTestCommon_SuffixOnValue type parameter seqan::StringSet >, seqan::Owner > > OK 95: ************************************** 95: Total Tests: 576 95: Skipped: 18 95: Errors: 0 95: ************************************** 95/397 Test #95: test_test_stringset_v2 ............................................................ Passed 0.34 sec test 100 Start 100: test_test_store 100: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_store 100: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/store 100: Test timeout computed to be: 10000000 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter seqan::String > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::vector, std::allocator > > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::vector > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::vector > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::vector > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::deque, std::allocator > > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::deque > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::deque > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::deque > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::forward_list > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::forward_list > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::forward_list > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_GreaterEqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String >, 4194304u, 2u> > > OK 99: TEST SUITE test_statistics 99: SEQAN_ENABLE_DEBUG == 1 99: SEQAN_ENABLE_TESTING == 1 99: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 99: SEQAN_ASYNC_IO == 1 99: test_statistics_markov_model OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String >, unsigned int> > > OK 100: TEST SUITE test_store 100: SEQAN_ENABLE_DEBUG == 1 100: SEQAN_ENABLE_TESTING == 1 100: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 100: SEQAN_ASYNC_IO == 1 99: test_statistics_statistics OK 99: ************************************** 99: Total Tests: 2 99: Skipped: 0 99: Errors: 0 99: ************************************** 96/397 Test #99: test_test_statistics .............................................................. Passed 0.14 sec test 101 Start 101: test_test_stream 101: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_stream 101: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/stream 101: Test timeout computed to be: 10000000 94: StringTestCommon_EqualOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > > OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter seqan::String > OK 94: StringTestCommon_EqualOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_EqualOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_EqualOperator type parameter std::vector, std::allocator > > OK 94: StringTestCommon_EqualOperator type parameter std::vector > OK 94: StringTestCommon_EqualOperator type parameter std::vector > OK 94: StringTestCommon_EqualOperator type parameter std::vector > OK 94: StringTestCommon_EqualOperator type parameter std::deque, std::allocator > > OK 94: StringTestCommon_EqualOperator type parameter std::deque > OK 94: StringTestCommon_EqualOperator type parameter std::deque > OK 94: StringTestCommon_EqualOperator type parameter std::deque > OK 94: StringTestCommon_EqualOperator type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_EqualOperator type parameter std::forward_list > OK 94: StringTestCommon_EqualOperator type parameter std::forward_list > OK 94: StringTestCommon_EqualOperator type parameter std::forward_list > OK 94: StringTestCommon_EqualOperator type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_EqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_EqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_EqualOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String >, unsigned int> > > OK 100: test_store_io_read_ucsc_known_genes OK 94: StringTestCommon_UnequalOperator type parameter seqan::String >, unsigned int> > > OK 100: test_store_io_read_ucsc_known_genes_and_isoforms OK 100: test_store_io_write_ucsc_known_genes OK 101: TEST SUITE tests 101: SEQAN_ENABLE_DEBUG == 1 101: SEQAN_ENABLE_TESTING == 1 101: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 101: SEQAN_ASYNC_IO == 1 100: test_store_io_read_gff OK 100: test_store_io_write_gff OK 94: StringTestCommon_UnequalOperator type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter seqan::String > OK 94: StringTestCommon_UnequalOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_UnequalOperator type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_UnequalOperator type parameter std::vector, std::allocator > > OK 94: StringTestCommon_UnequalOperator type parameter std::vector > OK 94: StringTestCommon_UnequalOperator type parameter std::vector > OK 94: StringTestCommon_UnequalOperator type parameter std::vector > OK 94: StringTestCommon_UnequalOperator type parameter std::deque, std::allocator > > OK 94: StringTestCommon_UnequalOperator type parameter std::deque > OK 94: StringTestCommon_UnequalOperator type parameter std::deque > OK 94: StringTestCommon_UnequalOperator type parameter std::deque > OK 94: StringTestCommon_UnequalOperator type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_UnequalOperator type parameter std::forward_list > OK 94: StringTestCommon_UnequalOperator type parameter std::forward_list > OK 94: StringTestCommon_UnequalOperator type parameter std::forward_list > OK 94: StringTestCommon_UnequalOperator type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_UnequalOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_UnequalOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_UnequalOperator type parameter std::__cxx11::list > OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Assign type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Assign type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Assign type parameter seqan::String >, 4194304u, 2u> > > OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_UnsignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_SignedSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_FloatingPointSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongPrefixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair >, void> OK 101: LexicalCastTest_WrongSuffixSource type parameter seqan::Pair, std::allocator >, void> OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 100: test_store_io_read_gtf OK 100: test_store_io_write_gtf OK 94: StringTestCommon_Assign type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Assign type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Assign type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Assign type parameter seqan::String > > OK 94: StringTestCommon_Assign type parameter seqan::String > > OK 94: StringTestCommon_Assign type parameter seqan::String > > OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter seqan::String > OK 94: StringTestCommon_Assign type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Assign type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Assign type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Assign type parameter std::vector > OK 94: StringTestCommon_Assign type parameter std::vector > OK 94: StringTestCommon_Assign type parameter std::vector > OK 94: StringTestCommon_Assign type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Assign type parameter std::deque > OK 94: StringTestCommon_Assign type parameter std::deque > OK 94: StringTestCommon_Assign type parameter std::deque > OK 94: StringTestCommon_Assign type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Assign type parameter std::forward_list > OK 94: StringTestCommon_Assign type parameter std::forward_list > OK 94: StringTestCommon_Assign type parameter std::forward_list > OK 94: StringTestCommon_Assign type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Assign type parameter std::__cxx11::list > OK 94: StringTestCommon_Assign type parameter std::__cxx11::list > OK 94: StringTestCommon_Assign type parameter std::__cxx11::list > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String >, unsigned int> > > OK 100: test_store_io_readwrite_amos OK 94: StringTestCommon_OperatorAssign type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter seqan::String > OK 94: StringTestCommon_OperatorAssign type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_OperatorAssign type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_OperatorAssign type parameter std::vector, std::allocator > > OK 94: StringTestCommon_OperatorAssign type parameter std::vector > OK 94: StringTestCommon_OperatorAssign type parameter std::vector > OK 94: StringTestCommon_OperatorAssign type parameter std::vector > OK 94: StringTestCommon_OperatorAssign type parameter std::deque, std::allocator > > OK 94: StringTestCommon_OperatorAssign type parameter std::deque > OK 94: StringTestCommon_OperatorAssign type parameter std::deque > OK 94: StringTestCommon_OperatorAssign type parameter std::deque > OK 94: StringTestCommon_OperatorAssign type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_OperatorAssign type parameter std::forward_list > OK 94: StringTestCommon_OperatorAssign type parameter std::forward_list > OK 94: StringTestCommon_OperatorAssign type parameter std::forward_list > OK 94: StringTestCommon_OperatorAssign type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_OperatorAssign type parameter std::__cxx11::list > OK 94: StringTestCommon_OperatorAssign type parameter std::__cxx11::list > OK 94: StringTestCommon_OperatorAssign type parameter std::__cxx11::list > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Swap type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Swap type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Swap type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Swap type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Swap type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Swap type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Swap type parameter seqan::String > > OK 94: StringTestCommon_Swap type parameter seqan::String > > OK 94: StringTestCommon_Swap type parameter seqan::String > > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter seqan::String > OK 94: StringTestCommon_Swap type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Swap type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Swap type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Swap type parameter std::vector > OK 94: StringTestCommon_Swap type parameter std::vector > OK 94: StringTestCommon_Swap type parameter std::vector > OK 94: StringTestCommon_Swap type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Swap type parameter std::deque > OK 94: StringTestCommon_Swap type parameter std::deque > OK 94: StringTestCommon_Swap type parameter std::deque > OK 94: StringTestCommon_Swap type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Swap type parameter std::forward_list > OK 94: StringTestCommon_Swap type parameter std::forward_list > OK 94: StringTestCommon_Swap type parameter std::forward_list > OK 94: StringTestCommon_Swap type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Swap type parameter std::__cxx11::list > OK 94: StringTestCommon_Swap type parameter std::__cxx11::list > OK 94: StringTestCommon_Swap type parameter std::__cxx11::list > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Reverse type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Reverse type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Reverse type parameter seqan::String >, 4194304u, 2u> > > OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair >, void> OK 101: LexicalCastTest_Exception type parameter seqan::Pair, std::allocator >, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, short, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, int, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, long, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, long long, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, unsigned short, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, unsigned int, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, unsigned long, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, unsigned long long, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, float, void> OK 101: AppendUnsignedTest_AppendNumber type parameter seqan::Pair >, double, void> OK 101: AppendSignedTest_AppendNumber type parameter seqan::Pair >, short, void> OK 101: AppendSignedTest_AppendNumber type parameter seqan::Pair >, int, void> OK 101: AppendSignedTest_AppendNumber type parameter seqan::Pair >, long, void> OK 101: AppendSignedTest_AppendNumber type parameter seqan::Pair >, long long, void> OK 101: AppendSignedTest_AppendNumber type parameter seqan::Pair >, float, void> OK 101: AppendSignedTest_AppendNumber type parameter seqan::Pair >, double, void> OK 101: AppendFloatingPointTest_AppendNumber type parameter seqan::Pair >, float, void> OK 101: AppendFloatingPointTest_AppendNumber type parameter seqan::Pair >, double, void> OK 101: TokenizationTest_read type parameter seqan::String > OK 101: TokenizationTest_read type parameter std::basic_ifstream > OK 101: TokenizationTest_read type parameter std::basic_fstream > OK 101: TokenizationTest_read type parameter seqan::Iter >, seqan::StreamIterator > > OK 101: TokenizationTest_ReadIgnoring type parameter seqan::String > OK 101: TokenizationTest_ReadIgnoring type parameter std::basic_ifstream > OK 101: TokenizationTest_ReadIgnoring type parameter std::basic_fstream > OK 101: TokenizationTest_ReadIgnoring type parameter seqan::Iter >, seqan::StreamIterator > > OK 101: TokenizationTest_ReadUntil_ReadLine type parameter seqan::String > OK 101: TokenizationTest_ReadUntil_ReadLine type parameter std::basic_ifstream > OK 101: TokenizationTest_ReadUntil_ReadLine type parameter std::basic_fstream > OK 101: TokenizationTest_ReadUntil_ReadLine type parameter seqan::Iter >, seqan::StreamIterator > > OK 101: TokenizationTest_SkipUntil type parameter seqan::String > OK 101: TokenizationTest_SkipUntil type parameter std::basic_ifstream > OK 101: TokenizationTest_SkipUntil type parameter std::basic_fstream > OK 101: TokenizationTest_SkipUntil type parameter seqan::Iter >, seqan::StreamIterator > > OK 101: TokenizationTest_SkipLine type parameter seqan::String > OK 101: TokenizationTest_SkipLine type parameter std::basic_ifstream > OK 101: TokenizationTest_SkipLine type parameter std::basic_fstream > OK 101: TokenizationTest_SkipLine type parameter seqan::Iter >, seqan::StreamIterator > > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 101: FileStreamTest_ReadSimpleUsage type parameter seqan::Async OK 101: FileStreamTest_ReadSimpleUsage type parameter seqan::MMap >, unsigned int> > OK 101: FileStreamTest_ReadComplexUsage type parameter seqan::Async OK 101: FileStreamTest_ReadComplexUsage type parameter seqan::MMap >, unsigned int> > OK 101: FileStreamTest_WriteSimpleUsage type parameter seqan::Async OK 101: FileStreamTest_WriteSimpleUsage type parameter seqan::MMap >, unsigned int> > OK 101: FileStreamTest_WriteComplexUsage type parameter seqan::Async OK 101: FileStreamTest_WriteComplexUsage type parameter seqan::MMap >, unsigned int> > OK 94: StringTestCommon_Reverse type parameter seqan::String >, unsigned int> > > OK 101: FileStreamTest_Eof type parameter seqan::Async OK 101: FileStreamTest_Eof type parameter seqan::MMap >, unsigned int> > OK 101: FileStreamTest_Seek type parameter seqan::Async OK 101: FileStreamTest_Seek type parameter seqan::MMap >, unsigned int> > OK 101: FileStreamTest_Tell type parameter seqan::Async OK 101: FileStreamTest_Tell type parameter seqan::MMap >, unsigned int> > OK 94: StringTestCommon_Reverse type parameter seqan::String >, unsigned int> > > OK 100: test_store_io_read_amos OK 94: StringTestCommon_Reverse type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Reverse type parameter seqan::String > > OK 94: StringTestCommon_Reverse type parameter seqan::String > > OK 94: StringTestCommon_Reverse type parameter seqan::String > > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter seqan::String > OK 94: StringTestCommon_Reverse type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Reverse type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Reverse type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Reverse type parameter std::vector > OK 94: StringTestCommon_Reverse type parameter std::vector > OK 94: StringTestCommon_Reverse type parameter std::vector > OK 94: StringTestCommon_Reverse type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Reverse type parameter std::deque > OK 94: StringTestCommon_Reverse type parameter std::deque > OK 94: StringTestCommon_Reverse type parameter std::deque > OK 94: StringTestCommon_Reverse type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Reverse type parameter std::forward_list > OK 94: StringTestCommon_Reverse type parameter std::forward_list > OK 94: StringTestCommon_Reverse type parameter std::forward_list > OK 94: StringTestCommon_Reverse type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Reverse type parameter std::__cxx11::list > OK 94: StringTestCommon_Reverse type parameter std::__cxx11::list > OK 94: StringTestCommon_Reverse type parameter std::__cxx11::list > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_AssignValue type parameter seqan::String > > OK 94: StringTestCommon_AssignValue type parameter seqan::String > > OK 94: StringTestCommon_AssignValue type parameter seqan::String > > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter seqan::String > OK 94: StringTestCommon_AssignValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_AssignValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_AssignValue type parameter std::vector, std::allocator > > OK 94: StringTestCommon_AssignValue type parameter std::vector > OK 94: StringTestCommon_AssignValue type parameter std::vector > OK 94: StringTestCommon_AssignValue type parameter std::vector > OK 94: StringTestCommon_AssignValue type parameter std::deque, std::allocator > > OK 94: StringTestCommon_AssignValue type parameter std::deque > OK 94: StringTestCommon_AssignValue type parameter std::deque > OK 94: StringTestCommon_AssignValue type parameter std::deque > OK 94: StringTestCommon_AssignValue type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_AssignValue type parameter std::forward_list > OK 94: StringTestCommon_AssignValue type parameter std::forward_list > OK 94: StringTestCommon_AssignValue type parameter std::forward_list > OK 94: StringTestCommon_AssignValue type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_AssignValue type parameter std::__cxx11::list > OK 94: StringTestCommon_AssignValue type parameter std::__cxx11::list > OK 94: StringTestCommon_AssignValue type parameter std::__cxx11::list > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Append type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Append type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Append type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Append type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Append type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Append type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Append type parameter seqan::String > > OK 94: StringTestCommon_Append type parameter seqan::String > > OK 94: StringTestCommon_Append type parameter seqan::String > > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter seqan::String > OK 94: StringTestCommon_Append type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Append type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Append type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Append type parameter std::vector > OK 94: StringTestCommon_Append type parameter std::vector > OK 94: StringTestCommon_Append type parameter std::vector > OK 94: StringTestCommon_Append type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Append type parameter std::deque > OK 94: StringTestCommon_Append type parameter std::deque > OK 94: StringTestCommon_Append type parameter std::deque > OK 94: StringTestCommon_Append type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Append type parameter std::forward_list > OK 94: StringTestCommon_Append type parameter std::forward_list > OK 94: StringTestCommon_Append type parameter std::forward_list > OK 94: StringTestCommon_Append type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Append type parameter std::__cxx11::list > OK 94: StringTestCommon_Append type parameter std::__cxx11::list > OK 94: StringTestCommon_Append type parameter std::__cxx11::list > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_AppendValue type parameter seqan::String > > OK 94: StringTestCommon_AppendValue type parameter seqan::String > > OK 94: StringTestCommon_AppendValue type parameter seqan::String > > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter seqan::String > OK 94: StringTestCommon_AppendValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_AppendValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_AppendValue type parameter std::vector, std::allocator > > OK 94: StringTestCommon_AppendValue type parameter std::vector > OK 94: StringTestCommon_AppendValue type parameter std::vector > OK 94: StringTestCommon_AppendValue type parameter std::vector > OK 94: StringTestCommon_AppendValue type parameter std::deque, std::allocator > > OK 94: StringTestCommon_AppendValue type parameter std::deque > OK 94: StringTestCommon_AppendValue type parameter std::deque > OK 94: StringTestCommon_AppendValue type parameter std::deque > OK 94: StringTestCommon_AppendValue type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_AppendValue type parameter std::forward_list > OK 94: StringTestCommon_AppendValue type parameter std::forward_list > OK 94: StringTestCommon_AppendValue type parameter std::forward_list > OK 94: StringTestCommon_AppendValue type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_AppendValue type parameter std::__cxx11::list > OK 94: StringTestCommon_AppendValue type parameter std::__cxx11::list > OK 94: StringTestCommon_AppendValue type parameter std::__cxx11::list > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Back type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Back type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Back type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Back type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Back type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Back type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Back type parameter seqan::String > > OK 94: StringTestCommon_Back type parameter seqan::String > > OK 94: StringTestCommon_Back type parameter seqan::String > > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter seqan::String > OK 94: StringTestCommon_Back type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Back type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Back type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Back type parameter std::vector > OK 94: StringTestCommon_Back type parameter std::vector > OK 94: StringTestCommon_Back type parameter std::vector > OK 94: StringTestCommon_Back type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Back type parameter std::deque > OK 94: StringTestCommon_Back type parameter std::deque > OK 94: StringTestCommon_Back type parameter std::deque > OK 94: StringTestCommon_Back type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Back type parameter std::forward_list > OK 94: StringTestCommon_Back type parameter std::forward_list > OK 94: StringTestCommon_Back type parameter std::forward_list > OK 94: StringTestCommon_Back type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Back type parameter std::__cxx11::list > OK 94: StringTestCommon_Back type parameter std::__cxx11::list > OK 94: StringTestCommon_Back type parameter std::__cxx11::list > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Begin type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Begin type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Begin type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Begin type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Begin type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Begin type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Begin type parameter seqan::String > > OK 94: StringTestCommon_Begin type parameter seqan::String > > OK 94: StringTestCommon_Begin type parameter seqan::String > > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter seqan::String > OK 94: StringTestCommon_Begin type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Begin type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Begin type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Begin type parameter std::vector > OK 94: StringTestCommon_Begin type parameter std::vector > OK 94: StringTestCommon_Begin type parameter std::vector > OK 94: StringTestCommon_Begin type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Begin type parameter std::deque > OK 94: StringTestCommon_Begin type parameter std::deque > OK 94: StringTestCommon_Begin type parameter std::deque > OK 94: StringTestCommon_Begin type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Begin type parameter std::forward_list > OK 94: StringTestCommon_Begin type parameter std::forward_list > OK 94: StringTestCommon_Begin type parameter std::forward_list > OK 94: StringTestCommon_Begin type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Begin type parameter std::__cxx11::list > OK 94: StringTestCommon_Begin type parameter std::__cxx11::list > OK 94: StringTestCommon_Begin type parameter std::__cxx11::list > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter seqan::String > OK 94: StringTestCommon_BeginPosition type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_BeginPosition type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_BeginPosition type parameter std::vector, std::allocator > > OK 94: StringTestCommon_BeginPosition type parameter std::vector > OK 94: StringTestCommon_BeginPosition type parameter std::vector > OK 94: StringTestCommon_BeginPosition type parameter std::vector > OK 94: StringTestCommon_BeginPosition type parameter std::deque, std::allocator > > OK 94: StringTestCommon_BeginPosition type parameter std::deque > OK 94: StringTestCommon_BeginPosition type parameter std::deque > OK 94: StringTestCommon_BeginPosition type parameter std::deque > OK 94: StringTestCommon_BeginPosition type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_BeginPosition type parameter std::forward_list > OK 94: StringTestCommon_BeginPosition type parameter std::forward_list > OK 94: StringTestCommon_BeginPosition type parameter std::forward_list > OK 94: StringTestCommon_BeginPosition type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_BeginPosition type parameter std::__cxx11::list > OK 94: StringTestCommon_BeginPosition type parameter std::__cxx11::list > OK 94: StringTestCommon_BeginPosition type parameter std::__cxx11::list > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Capacity type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Capacity type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Capacity type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Capacity type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Capacity type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Capacity type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Capacity type parameter seqan::String > > OK 94: StringTestCommon_Capacity type parameter seqan::String > > OK 94: StringTestCommon_Capacity type parameter seqan::String > > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter seqan::String > OK 94: StringTestCommon_Capacity type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Capacity type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Capacity type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Capacity type parameter std::vector > OK 94: StringTestCommon_Capacity type parameter std::vector > OK 94: StringTestCommon_Capacity type parameter std::vector > OK 94: StringTestCommon_Capacity type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Capacity type parameter std::deque > OK 94: StringTestCommon_Capacity type parameter std::deque > OK 94: StringTestCommon_Capacity type parameter std::deque > OK 94: StringTestCommon_Capacity type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Capacity type parameter std::forward_list > OK 94: StringTestCommon_Capacity type parameter std::forward_list > OK 94: StringTestCommon_Capacity type parameter std::forward_list > OK 94: StringTestCommon_Capacity type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Capacity type parameter std::__cxx11::list > OK 94: StringTestCommon_Capacity type parameter std::__cxx11::list > OK 94: StringTestCommon_Capacity type parameter std::__cxx11::list > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Clear type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Clear type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Clear type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Clear type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Clear type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Clear type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Clear type parameter seqan::String > > OK 94: StringTestCommon_Clear type parameter seqan::String > > OK 94: StringTestCommon_Clear type parameter seqan::String > > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter seqan::String > OK 94: StringTestCommon_Clear type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Clear type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Clear type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Clear type parameter std::vector > OK 94: StringTestCommon_Clear type parameter std::vector > OK 94: StringTestCommon_Clear type parameter std::vector > OK 94: StringTestCommon_Clear type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Clear type parameter std::deque > OK 94: StringTestCommon_Clear type parameter std::deque > OK 94: StringTestCommon_Clear type parameter std::deque > OK 94: StringTestCommon_Clear type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Clear type parameter std::forward_list > OK 94: StringTestCommon_Clear type parameter std::forward_list > OK 94: StringTestCommon_Clear type parameter std::forward_list > OK 94: StringTestCommon_Clear type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Clear type parameter std::__cxx11::list > OK 94: StringTestCommon_Clear type parameter std::__cxx11::list > OK 94: StringTestCommon_Clear type parameter std::__cxx11::list > OK 94: StringTestCommon_End type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_End type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_End type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_End type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_End type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_End type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_End type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_End type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_End type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_End type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_End type parameter seqan::String > > OK 94: StringTestCommon_End type parameter seqan::String > > OK 94: StringTestCommon_End type parameter seqan::String > > OK 94: StringTestCommon_End type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter seqan::String > OK 94: StringTestCommon_End type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_End type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_End type parameter std::vector, std::allocator > > OK 94: StringTestCommon_End type parameter std::vector > OK 94: StringTestCommon_End type parameter std::vector > OK 94: StringTestCommon_End type parameter std::vector > OK 94: StringTestCommon_End type parameter std::deque, std::allocator > > OK 94: StringTestCommon_End type parameter std::deque > OK 94: StringTestCommon_End type parameter std::deque > OK 94: StringTestCommon_End type parameter std::deque > OK 94: StringTestCommon_End type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_End type parameter std::forward_list > OK 94: StringTestCommon_End type parameter std::forward_list > OK 94: StringTestCommon_End type parameter std::forward_list > OK 94: StringTestCommon_End type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_End type parameter std::__cxx11::list > OK 94: StringTestCommon_End type parameter std::__cxx11::list > OK 94: StringTestCommon_End type parameter std::__cxx11::list > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_EndPosition type parameter seqan::String > > OK 94: StringTestCommon_EndPosition type parameter seqan::String > > OK 94: StringTestCommon_EndPosition type parameter seqan::String > > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter seqan::String > OK 94: StringTestCommon_EndPosition type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_EndPosition type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_EndPosition type parameter std::vector, std::allocator > > OK 94: StringTestCommon_EndPosition type parameter std::vector > OK 94: StringTestCommon_EndPosition type parameter std::vector > OK 94: StringTestCommon_EndPosition type parameter std::vector > OK 94: StringTestCommon_EndPosition type parameter std::deque, std::allocator > > OK 94: StringTestCommon_EndPosition type parameter std::deque > OK 94: StringTestCommon_EndPosition type parameter std::deque > OK 94: StringTestCommon_EndPosition type parameter std::deque > OK 94: StringTestCommon_EndPosition type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_EndPosition type parameter std::forward_list > OK 94: StringTestCommon_EndPosition type parameter std::forward_list > OK 94: StringTestCommon_EndPosition type parameter std::forward_list > OK 94: StringTestCommon_EndPosition type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_EndPosition type parameter std::__cxx11::list > OK 94: StringTestCommon_EndPosition type parameter std::__cxx11::list > OK 94: StringTestCommon_EndPosition type parameter std::__cxx11::list > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Erase type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Erase type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Erase type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Erase type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Erase type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Erase type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Erase type parameter seqan::String > > OK 94: StringTestCommon_Erase type parameter seqan::String > > OK 94: StringTestCommon_Erase type parameter seqan::String > > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter seqan::String > OK 94: StringTestCommon_Erase type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Erase type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Erase type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Erase type parameter std::vector > OK 94: StringTestCommon_Erase type parameter std::vector > OK 94: StringTestCommon_Erase type parameter std::vector > OK 94: StringTestCommon_Erase type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Erase type parameter std::deque > OK 94: StringTestCommon_Erase type parameter std::deque > OK 94: StringTestCommon_Erase type parameter std::deque > OK 94: StringTestCommon_Erase type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Erase type parameter std::forward_list > OK 94: StringTestCommon_Erase type parameter std::forward_list > OK 94: StringTestCommon_Erase type parameter std::forward_list > OK 94: StringTestCommon_Erase type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Erase type parameter std::__cxx11::list > OK 94: StringTestCommon_Erase type parameter std::__cxx11::list > OK 94: StringTestCommon_Erase type parameter std::__cxx11::list > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_EraseBack type parameter seqan::String > > OK 94: StringTestCommon_EraseBack type parameter seqan::String > > OK 94: StringTestCommon_EraseBack type parameter seqan::String > > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter seqan::String > OK 94: StringTestCommon_EraseBack type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_EraseBack type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_EraseBack type parameter std::vector, std::allocator > > OK 94: StringTestCommon_EraseBack type parameter std::vector > OK 94: StringTestCommon_EraseBack type parameter std::vector > OK 94: StringTestCommon_EraseBack type parameter std::vector > OK 94: StringTestCommon_EraseBack type parameter std::deque, std::allocator > > OK 94: StringTestCommon_EraseBack type parameter std::deque > OK 94: StringTestCommon_EraseBack type parameter std::deque > OK 94: StringTestCommon_EraseBack type parameter std::deque > OK 94: StringTestCommon_EraseBack type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_EraseBack type parameter std::forward_list > OK 94: StringTestCommon_EraseBack type parameter std::forward_list > OK 94: StringTestCommon_EraseBack type parameter std::forward_list > OK 94: StringTestCommon_EraseBack type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_EraseBack type parameter std::__cxx11::list > OK 94: StringTestCommon_EraseBack type parameter std::__cxx11::list > OK 94: StringTestCommon_EraseBack type parameter std::__cxx11::list > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String >, 4194304u, 2u> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String >, 4194304u, 2u> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String >, 4194304u, 2u> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String >, unsigned int> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String >, unsigned int> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String >, unsigned int> > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::Packed > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::Packed > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::Array<100u> > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::Block<4096u> > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String, seqan::Alloc > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter seqan::String > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::__cxx11::basic_string, std::allocator > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::__cxx11::basic_string, std::allocator > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::vector, std::allocator > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::vector > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::vector > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::vector > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::deque, std::allocator > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::deque > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::deque > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::deque > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::forward_list, std::allocator > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::forward_list > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::forward_list > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::forward_list > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::__cxx11::list, std::allocator > > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::__cxx11::list > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::__cxx11::list > OK 94: 1398 94: 1400 94: StringTestCommon_Front type parameter std::__cxx11::list > OK 100: test_store_io_write_amos OK 94: StringTestCommon_GetValue type parameter seqan::String, seqan::External >, 4194304u, 2u> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String >, 4194304u, 2u> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String >, 4194304u, 2u> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String >, 4194304u, 2u> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String, seqan::MMap >, unsigned int> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String >, unsigned int> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String >, unsigned int> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String >, unsigned int> > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String, seqan::Packed > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String, seqan::Packed > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String, seqan::Array<100u> > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String, seqan::Block<4096u> > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String, seqan::Alloc > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter seqan::String > SKIPPED 94: StringTestCommon_GetValue type parameter std::__cxx11::basic_string, std::allocator > SKIPPED 94: StringTestCommon_GetValue type parameter std::__cxx11::basic_string, std::allocator > SKIPPED 94: StringTestCommon_GetValue type parameter std::vector, std::allocator > > SKIPPED 94: StringTestCommon_GetValue type parameter std::vector > SKIPPED 94: StringTestCommon_GetValue type parameter std::vector > SKIPPED 94: StringTestCommon_GetValue type parameter std::vector > SKIPPED 94: StringTestCommon_GetValue type parameter std::deque, std::allocator > > SKIPPED 94: StringTestCommon_GetValue type parameter std::deque > SKIPPED 94: StringTestCommon_GetValue type parameter std::deque > SKIPPED 94: StringTestCommon_GetValue type parameter std::deque > SKIPPED 94: StringTestCommon_GetValue type parameter std::forward_list, std::allocator > > SKIPPED 94: StringTestCommon_GetValue type parameter std::forward_list > SKIPPED 94: StringTestCommon_GetValue type parameter std::forward_list > SKIPPED 94: StringTestCommon_GetValue type parameter std::forward_list > SKIPPED 94: StringTestCommon_GetValue type parameter std::__cxx11::list, std::allocator > > SKIPPED 94: StringTestCommon_GetValue type parameter std::__cxx11::list > SKIPPED 94: StringTestCommon_GetValue type parameter std::__cxx11::list > SKIPPED 94: StringTestCommon_GetValue type parameter std::__cxx11::list > SKIPPED 94: StringTestCommon_Insert type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Insert type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Insert type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Insert type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Insert type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Insert type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Insert type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Insert type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Insert type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Insert type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Insert type parameter seqan::String > > OK 94: StringTestCommon_Insert type parameter seqan::String > > OK 94: StringTestCommon_Insert type parameter seqan::String > > OK 94: StringTestCommon_Insert type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter seqan::String > OK 94: StringTestCommon_Insert type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Insert type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Insert type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Insert type parameter std::vector > OK 94: StringTestCommon_Insert type parameter std::vector > OK 94: StringTestCommon_Insert type parameter std::vector > OK 94: StringTestCommon_Insert type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Insert type parameter std::deque > OK 94: StringTestCommon_Insert type parameter std::deque > OK 94: StringTestCommon_Insert type parameter std::deque > OK 94: StringTestCommon_Insert type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Insert type parameter std::forward_list > OK 94: StringTestCommon_Insert type parameter std::forward_list > OK 94: StringTestCommon_Insert type parameter std::forward_list > OK 94: StringTestCommon_Insert type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Insert type parameter std::__cxx11::list > OK 94: StringTestCommon_Insert type parameter std::__cxx11::list > OK 94: StringTestCommon_Insert type parameter std::__cxx11::list > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String >, unsigned int> > > OK 101: FileStreamTest_ReadLarge type parameter seqan::Async OK 94: StringTestCommon_InsertValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_InsertValue type parameter seqan::String > > OK 94: StringTestCommon_InsertValue type parameter seqan::String > > OK 94: StringTestCommon_InsertValue type parameter seqan::String > > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter seqan::String > OK 94: StringTestCommon_InsertValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_InsertValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_InsertValue type parameter std::vector, std::allocator > > OK 94: StringTestCommon_InsertValue type parameter std::vector > OK 94: StringTestCommon_InsertValue type parameter std::vector > OK 94: StringTestCommon_InsertValue type parameter std::vector > OK 94: StringTestCommon_InsertValue type parameter std::deque, std::allocator > > OK 94: StringTestCommon_InsertValue type parameter std::deque > OK 94: StringTestCommon_InsertValue type parameter std::deque > OK 94: StringTestCommon_InsertValue type parameter std::deque > OK 94: StringTestCommon_InsertValue type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_InsertValue type parameter std::forward_list > OK 94: StringTestCommon_InsertValue type parameter std::forward_list > OK 94: StringTestCommon_InsertValue type parameter std::forward_list > OK 94: StringTestCommon_InsertValue type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_InsertValue type parameter std::__cxx11::list > OK 94: StringTestCommon_InsertValue type parameter std::__cxx11::list > OK 94: StringTestCommon_InsertValue type parameter std::__cxx11::list > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Iter type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Iter type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Iter type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Iter type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Iter type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Iter type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Iter type parameter seqan::String > > OK 94: StringTestCommon_Iter type parameter seqan::String > > OK 94: StringTestCommon_Iter type parameter seqan::String > > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter seqan::String > OK 94: StringTestCommon_Iter type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Iter type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Iter type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Iter type parameter std::vector > OK 94: StringTestCommon_Iter type parameter std::vector > OK 94: StringTestCommon_Iter type parameter std::vector > OK 94: StringTestCommon_Iter type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Iter type parameter std::deque > OK 94: StringTestCommon_Iter type parameter std::deque > OK 94: StringTestCommon_Iter type parameter std::deque > OK 94: StringTestCommon_Iter type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Iter type parameter std::forward_list > OK 94: StringTestCommon_Iter type parameter std::forward_list > OK 94: StringTestCommon_Iter type parameter std::forward_list > OK 94: StringTestCommon_Iter type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Iter type parameter std::__cxx11::list > OK 94: StringTestCommon_Iter type parameter std::__cxx11::list > OK 94: StringTestCommon_Iter type parameter std::__cxx11::list > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Length type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Length type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Length type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Length type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Length type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Length type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Length type parameter seqan::String > > OK 94: StringTestCommon_Length type parameter seqan::String > > OK 94: StringTestCommon_Length type parameter seqan::String > > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter seqan::String > OK 94: StringTestCommon_Length type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Length type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Length type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Length type parameter std::vector > OK 94: StringTestCommon_Length type parameter std::vector > OK 94: StringTestCommon_Length type parameter std::vector > OK 94: StringTestCommon_Length type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Length type parameter std::deque > OK 94: StringTestCommon_Length type parameter std::deque > OK 94: StringTestCommon_Length type parameter std::deque > OK 94: StringTestCommon_Length type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Length type parameter std::forward_list > OK 94: StringTestCommon_Length type parameter std::forward_list > OK 94: StringTestCommon_Length type parameter std::forward_list > OK 94: StringTestCommon_Length type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Length type parameter std::__cxx11::list > OK 94: StringTestCommon_Length type parameter std::__cxx11::list > OK 94: StringTestCommon_Length type parameter std::__cxx11::list > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_MoveValue type parameter seqan::String > > OK 94: StringTestCommon_MoveValue type parameter seqan::String > > OK 94: StringTestCommon_MoveValue type parameter seqan::String > > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter seqan::String > OK 94: StringTestCommon_MoveValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_MoveValue type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_MoveValue type parameter std::vector, std::allocator > > OK 94: StringTestCommon_MoveValue type parameter std::vector > OK 94: StringTestCommon_MoveValue type parameter std::vector > OK 94: StringTestCommon_MoveValue type parameter std::vector > OK 94: StringTestCommon_MoveValue type parameter std::deque, std::allocator > > OK 94: StringTestCommon_MoveValue type parameter std::deque > OK 94: StringTestCommon_MoveValue type parameter std::deque > OK 94: StringTestCommon_MoveValue type parameter std::deque > OK 94: StringTestCommon_MoveValue type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_MoveValue type parameter std::forward_list > OK 94: StringTestCommon_MoveValue type parameter std::forward_list > OK 94: StringTestCommon_MoveValue type parameter std::forward_list > OK 94: StringTestCommon_MoveValue type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_MoveValue type parameter std::__cxx11::list > OK 94: StringTestCommon_MoveValue type parameter std::__cxx11::list > OK 94: StringTestCommon_MoveValue type parameter std::__cxx11::list > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Replace type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Replace type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Replace type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Replace type parameter seqan::String >, unsigned int> > > OK 100: test_store_io_sam OK 94: StringTestCommon_Replace type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Replace type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Replace type parameter seqan::String > > OK 94: StringTestCommon_Replace type parameter seqan::String > > OK 94: StringTestCommon_Replace type parameter seqan::String > > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter seqan::String > OK 94: StringTestCommon_Replace type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Replace type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Replace type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Replace type parameter std::vector > OK 94: StringTestCommon_Replace type parameter std::vector > OK 94: StringTestCommon_Replace type parameter std::vector > OK 94: StringTestCommon_Replace type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Replace type parameter std::deque > OK 94: StringTestCommon_Replace type parameter std::deque > OK 94: StringTestCommon_Replace type parameter std::deque > OK 94: StringTestCommon_Replace type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Replace type parameter std::forward_list > OK 94: StringTestCommon_Replace type parameter std::forward_list > OK 94: StringTestCommon_Replace type parameter std::forward_list > OK 94: StringTestCommon_Replace type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Replace type parameter std::__cxx11::list > OK 94: StringTestCommon_Replace type parameter std::__cxx11::list > OK 94: StringTestCommon_Replace type parameter std::__cxx11::list > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Reserve type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Reserve type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Reserve type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Reserve type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Reserve type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Reserve type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Reserve type parameter seqan::String > > OK 94: StringTestCommon_Reserve type parameter seqan::String > > OK 94: StringTestCommon_Reserve type parameter seqan::String > > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter seqan::String > OK 94: StringTestCommon_Reserve type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Reserve type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Reserve type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Reserve type parameter std::vector > OK 94: StringTestCommon_Reserve type parameter std::vector > OK 94: StringTestCommon_Reserve type parameter std::vector > OK 94: StringTestCommon_Reserve type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Reserve type parameter std::deque > OK 94: StringTestCommon_Reserve type parameter std::deque > OK 94: StringTestCommon_Reserve type parameter std::deque > OK 94: StringTestCommon_Reserve type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Reserve type parameter std::forward_list > OK 94: StringTestCommon_Reserve type parameter std::forward_list > OK 94: StringTestCommon_Reserve type parameter std::forward_list > OK 94: StringTestCommon_Reserve type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Reserve type parameter std::__cxx11::list > OK 94: StringTestCommon_Reserve type parameter std::__cxx11::list > OK 94: StringTestCommon_Reserve type parameter std::__cxx11::list > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Resize type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Resize type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Resize type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Resize type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Resize type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Resize type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Resize type parameter seqan::String > > OK 94: StringTestCommon_Resize type parameter seqan::String > > OK 94: StringTestCommon_Resize type parameter seqan::String > > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter seqan::String > OK 94: StringTestCommon_Resize type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Resize type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Resize type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Resize type parameter std::vector > OK 94: StringTestCommon_Resize type parameter std::vector > OK 94: StringTestCommon_Resize type parameter std::vector > OK 94: StringTestCommon_Resize type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Resize type parameter std::deque > OK 94: StringTestCommon_Resize type parameter std::deque > OK 94: StringTestCommon_Resize type parameter std::deque > OK 94: StringTestCommon_Resize type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Resize type parameter std::forward_list > OK 94: StringTestCommon_Resize type parameter std::forward_list > OK 94: StringTestCommon_Resize type parameter std::forward_list > OK 94: StringTestCommon_Resize type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Resize type parameter std::__cxx11::list > OK 94: StringTestCommon_Resize type parameter std::__cxx11::list > OK 94: StringTestCommon_Resize type parameter std::__cxx11::list > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::External >, 4194304u, 2u> > > OK 94: StringTestCommon_Value type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Value type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Value type parameter seqan::String >, 4194304u, 2u> > > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::MMap >, unsigned int> > > OK 94: StringTestCommon_Value type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Value type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Value type parameter seqan::String >, unsigned int> > > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::Packed > > OK 94: StringTestCommon_Value type parameter seqan::String > > OK 94: StringTestCommon_Value type parameter seqan::String > > OK 94: StringTestCommon_Value type parameter seqan::String > > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::Array<100u> > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::Block<4096u> > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String, seqan::Alloc > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter seqan::String > OK 94: StringTestCommon_Value type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Value type parameter std::__cxx11::basic_string, std::allocator > OK 94: StringTestCommon_Value type parameter std::vector, std::allocator > > OK 94: StringTestCommon_Value type parameter std::vector > OK 94: StringTestCommon_Value type parameter std::vector > OK 94: StringTestCommon_Value type parameter std::vector > OK 94: StringTestCommon_Value type parameter std::deque, std::allocator > > OK 94: StringTestCommon_Value type parameter std::deque > OK 94: StringTestCommon_Value type parameter std::deque > OK 94: StringTestCommon_Value type parameter std::deque > OK 94: StringTestCommon_Value type parameter std::forward_list, std::allocator > > OK 94: StringTestCommon_Value type parameter std::forward_list > OK 94: StringTestCommon_Value type parameter std::forward_list > OK 94: StringTestCommon_Value type parameter std::forward_list > OK 94: StringTestCommon_Value type parameter std::__cxx11::list, std::allocator > > OK 94: StringTestCommon_Value type parameter std::__cxx11::list > OK 94: StringTestCommon_Value type parameter std::__cxx11::list > OK 94: StringTestCommon_Value type parameter std::__cxx11::list > OK 94: ************************************** 94: Total Tests: 1505 94: Skipped: 43 94: Errors: 0 94: ************************************** 97/397 Test #94: test_test_sequence_v2 ............................................................. Passed 1.48 sec test 102 Start 102: test_test_find_swift 102: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_find_swift 102: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/swift_local 102: Test timeout computed to be: 10000000 102: TEST SUITE test_find_swift 102: SEQAN_ENABLE_DEBUG == 1 102: SEQAN_ENABLE_TESTING == 1 102: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 102: SEQAN_ASYNC_IO == 1 102: test_find_swift OK 102: test_longest_epsMatch OK 102: test_split_xDrop_align OK 102: ************************************** 102: Total Tests: 3 102: Skipped: 0 102: Errors: 0 102: ************************************** 98/397 Test #102: test_test_find_swift .............................................................. Passed 0.04 sec test 103 Start 103: test_test_tabix_io 103: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_tabix_io 103: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/tabix_io 103: Test timeout computed to be: 10000000 101: FileStreamTest_ReadLarge type parameter seqan::MMap >, unsigned int> > OK 100: test_store_io_sam2 OK 103: TEST SUITE test_tabix_io 103: SEQAN_ENABLE_DEBUG == 1 103: SEQAN_ENABLE_TESTING == 1 103: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 103: SEQAN_ASYNC_IO == 1 101: FileStreamTest_WriteLarge type parameter seqan::Async OK 103: test_tabix_io_read_indexed_vcf OK 103: ************************************** 103: Total Tests: 1 103: Skipped: 0 103: Errors: 0 103: ************************************** 99/397 Test #103: test_test_tabix_io ................................................................ Passed 0.19 sec test 104 Start 104: test_translation 104: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_translation 104: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/translation 104: Test timeout computed to be: 10000000 104: TEST SUITE test_translation 104: SEQAN_ENABLE_DEBUG == 1 104: SEQAN_ENABLE_TESTING == 1 104: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 104: SEQAN_ASYNC_IO == 1 101: FileStreamTest_WriteLarge type parameter seqan::MMap >, unsigned int> > OK 104: test_translation_onestring_singleframe_allcodes OK 104: test_translation_onestring_singleframe_allcodes_runtime OK 104: test_translation_onestring_multiframe_serial OK 104: test_translation_onestring_multiframe_concatdirect_serial OK 104: test_translation_stringset_multiframe_serial OK 104: test_translation_stringset_multiframe_concatdirect_serial OK 104: test_translation_onestring_multiframe_parallel OK 100: test_store_io_split_sam OK 101: FileStreamTest_SeekLarge type parameter seqan::Async OK 101: FileStreamTest_SeekLarge type parameter seqan::MMap >, unsigned int> > OK 104: test_translation_onestring_multiframe_concatdirect_parallel OK 100: test_store_io_read_bam OK 100: ************************************** 100: Total Tests: 14 100: Skipped: 0 100: Errors: 0 100: ************************************** 100/397 Test #100: test_test_store ................................................................... Passed 1.26 sec test 105 Start 105: test_ucsc_io 105: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_ucsc_io 105: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/ucsc_io 105: Test timeout computed to be: 10000000 101: VStreamTest_Construct type parameter seqan::Tag OK 101: VStreamTest_Construct type parameter seqan::Tag OK 101: VStreamTest_Construct type parameter seqan::Tag OK 101: VStreamTest_Construct type parameter seqan::Tag OK 101: VStreamTest_OpenClose type parameter seqan::Tag OK 101: VStreamTest_OpenClose type parameter seqan::Tag OK 101: VStreamTest_OpenClose type parameter seqan::Tag OK 101: VStreamTest_OpenClose type parameter seqan::Tag OK 105: TEST SUITE test_ucsc_io 105: SEQAN_ENABLE_DEBUG == 1 105: SEQAN_ENABLE_TESTING == 1 105: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 105: SEQAN_ASYNC_IO == 1 105: test_ucsc_io_read_record_ucsc_known_genes OK 105: test_ucsc_io_read_record_ucsc_known_isoforms OK 105: test_ucsc_io_write_record_ucsc_known_genes OK 105: test_ucsc_io_write_record_ucsc_known_isoforms OK 105: test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes OK 105: test_ucsc_io_ucsc_file_in_read_record_ucsc_known_isoforms OK 105: test_ucsc_io_ucsc_file_out_write_record_ucsc_known_genes OK 105: test_ucsc_io_ucsc_file_out_write_record_ucsc_known_isoforms OK 105: ************************************** 105: Total Tests: 8 105: Skipped: 0 105: Errors: 0 105: ************************************** 101/397 Test #105: test_ucsc_io ...................................................................... Passed 0.09 sec test 106 Start 106: test_test_vcf_io 106: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_vcf_io 106: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/tests/vcf_io 106: Test timeout computed to be: 10000000 106: TEST SUITE test_vcf_io 106: SEQAN_ENABLE_DEBUG == 1 106: SEQAN_ENABLE_TESTING == 1 106: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 106: SEQAN_ASYNC_IO == 1 101: VStreamTest_Decompression type parameter seqan::Tag OK 106: test_vcf_io_read_vcf_header OK 106: test_vcf_io_read_vcf_record OK 106: test_vcf_io_vcf_file_read_record OK 101: VStreamTest_Decompression type parameter seqan::Tag OK 106: test_vcf_io_write_vcf_header OK 106: test_vcf_io_write_vcf_record OK 106: test_vcf_io_vcf_file_write_record OK 106: test_vcf_io_isOpen_fileIn OK 106: test_vcf_io_isOpen_fileOut OK 106: ************************************** 106: Total Tests: 8 106: Skipped: 0 106: Errors: 0 106: ************************************** 101: VStreamTest_Decompression type parameter seqan::Tag OK 101: VStreamTest_Decompression type parameter seqan::Tag OK 102/397 Test #106: test_test_vcf_io .................................................................. Passed 0.12 sec test 107 Start 107: test_demo_dox_align_align 107: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_align" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp.stdout" 107: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 107: Test timeout computed to be: 10000000 101: VStreamTest_Compression type parameter seqan::Tag OK 101: VStreamTest_Compression type parameter seqan::Tag OK 104: test_translation_stringset_multiframe_parallel OK 101: VStreamTest_Compression type parameter seqan::Tag OK 101: VStreamTest_Compression type parameter seqan::Tag OK 101: VStreamTest_AutoDetection type parameter seqan::Tag OK 101: VStreamTest_AutoDetection type parameter seqan::Tag OK 101: VStreamTest_AutoDetection type parameter seqan::Tag OK 101: VStreamTest_AutoDetection type parameter seqan::Tag OK 101: WriteTest_StdString type parameter seqan::String > OK 101: InputStreamTest_Open type parameter std::basic_fstream > OK 101: InputStreamTest_Open type parameter std::basic_ifstream > OK 104: test_translation_stringset_multiframe_concatdirect_parallel OK 104: ************************************** 104: Total Tests: 10 104: Skipped: 0 104: Errors: 0 104: ************************************** 107: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 107: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 103/397 Test #104: test_translation .................................................................. Passed 1.35 sec test 108 Start 108: test_demo_dox_align_compute_alignment_stats 108: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_compute_alignment_stats" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp.stdout" 108: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 108: Test timeout computed to be: 10000000 108: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 108: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 101: InputStreamTest_Get type parameter std::basic_fstream > OK 108: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_compute_alignment_stats. 107: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_align. 107: Return code was 0. 107: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp.stdout", "None". 108: Return code was 0. 108: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp.stdout", "None". 107: Standard output was as expected. 107: Standard error was as expected. 108: Standard output was as expected. 108: Standard error was as expected. 104/397 Test #107: test_demo_dox_align_align ......................................................... Passed 1.31 sec test 109 Start 109: test_demo_dox_align_gaps_example 109: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_gaps_example" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/gaps_example.cpp.stdout" 109: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 109: Test timeout computed to be: 10000000 105/397 Test #108: test_demo_dox_align_compute_alignment_stats ....................................... Passed 0.56 sec test 110 Start 110: test_demo_dox_align_global_alignment_banded 110: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_global_alignment_banded" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_banded.cpp.stdout" 110: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 110: Test timeout computed to be: 10000000 109: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 109: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 109: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_gaps_example. 110: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 110: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 109: Return code was 0. 109: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/gaps_example.cpp.stdout", "None". 109: Standard output was as expected. 109: Standard error was as expected. 106/397 Test #109: test_demo_dox_align_gaps_example .................................................. Passed 0.11 sec test 111 Start 111: test_demo_dox_align_global_alignment_unbanded 111: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_global_alignment_unbanded" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_unbanded.cpp.stdout" 111: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 111: Test timeout computed to be: 10000000 111: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 111: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 110: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_global_alignment_banded. 101: InputStreamTest_Get type parameter std::basic_ifstream > OK 101: InputStreamTest_Eof type parameter std::basic_fstream > OK 101: InputStreamTest_Eof type parameter std::basic_ifstream > OK 101: OutputStreamTest_Open type parameter std::basic_fstream > OK 110: Return code was 0. 110: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_banded.cpp.stdout", "None". 110: Standard output was as expected. 110: Standard error was as expected. 111: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_global_alignment_unbanded. 101: OutputStreamTest_Open type parameter std::basic_ofstream > OK 101: OutputStreamTest_Put type parameter std::basic_fstream > OK 101: OutputStreamTest_Put type parameter std::basic_ofstream > OK 101: InputStreamTest_Tell type parameter std::basic_fstream > OK 101: InputStreamTest_Tell type parameter std::basic_ifstream > OK 101: OutputStreamTest_Tell type parameter std::basic_fstream > OK 101: OutputStreamTest_Tell type parameter std::basic_ofstream > OK 107/397 Test #110: test_demo_dox_align_global_alignment_banded ....................................... Passed 0.18 sec test 112 Start 112: test_demo_dox_align_integrate_align 112: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_integrate_align" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp.stdout" 112: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 112: Test timeout computed to be: 10000000 111: Return code was 0. 111: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/global_alignment_unbanded.cpp.stdout", "None". 111: Standard output was as expected. 111: Standard error was as expected. 101: ************************************** 101: Total Tests: 213 101: Skipped: 0 101: Errors: 0 101: ************************************** 108/397 Test #101: test_test_stream .................................................................. Passed 2.90 sec test 113 Start 113: test_demo_dox_align_extend_extend_alignment 113: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_extend_extend_alignment" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp.stdout" 113: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 113: Test timeout computed to be: 10000000 112: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 112: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 109/397 Test #111: test_demo_dox_align_global_alignment_unbanded ..................................... Passed 0.14 sec test 114 Start 114: test_demo_dox_align_split_split_alignment 114: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_split_split_alignment" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_split/split_alignment.cpp.stdout" 114: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 114: Test timeout computed to be: 10000000 113: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 113: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 114: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 114: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 112: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_integrate_align. 113: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_extend_extend_alignment. 112: Return code was 0. 112: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp.stdout", "None". 112: Standard output was as expected. 112: Standard error was as expected. 110/397 Test #112: test_demo_dox_align_integrate_align ............................................... Passed 0.15 sec test 115 Start 115: test_demo_dox_bam_io_bam_tags_dict 115: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_bam_io_bam_tags_dict" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp.stdout" 115: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 115: Test timeout computed to be: 10000000 114: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_align_split_split_alignment. 113: Return code was 0. 113: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp.stdout", "None". 115: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 115: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 115: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_bam_io_bam_tags_dict. 115: Return code was 0. 115: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_tags_dict.cpp.stdout", "None". 114: Return code was 0. 114: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/align_split/split_alignment.cpp.stdout", "None". 115: Standard output was as expected. 115: Standard error was as expected. 113: Standard output was as expected. 113: Standard error was as expected. 114: Standard output was as expected. 114: Standard error was as expected. 111/397 Test #114: test_demo_dox_align_split_split_alignment ......................................... Passed 0.17 sec test 116 Start 116: test_demo_dox_basic_zip_iterator 116: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_basic_zip_iterator" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/zip_iterator.cpp.stdout" 116: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 116: Test timeout computed to be: 10000000 112/397 Test #115: test_demo_dox_bam_io_bam_tags_dict ................................................ Passed 0.08 sec test 117 Start 117: test_demo_dox_consensus_consensus_alignment 117: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_consensus_consensus_alignment" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp.stdout" 117: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 117: Test timeout computed to be: 10000000 116: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 116: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 113/397 Test #113: test_demo_dox_align_extend_extend_alignment ....................................... Passed 0.21 sec test 118 Start 118: test_demo_dox_find_finder_index 118: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_find_finder_index" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp.stdout" 118: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 118: Test timeout computed to be: 10000000 117: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 117: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 56: BidirectionalFMIndexTest_SearchInStringSet type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 116: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_basic_zip_iterator. 118: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 118: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 116: Return code was 0. 116: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/basic/zip_iterator.cpp.stdout", "None". 117: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_consensus_consensus_alignment. 116: Standard output was as expected. 116: Standard error was as expected. 114/397 Test #116: test_demo_dox_basic_zip_iterator .................................................. Passed 0.16 sec test 119 Start 119: test_demo_dox_find_finder_online 119: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_find_finder_online" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_online.cpp.stdout" 119: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 119: Test timeout computed to be: 10000000 118: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_find_finder_index. 119: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 119: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 119: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_find_finder_online. 118: Return code was 0. 118: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp.stdout", "None". 119: Return code was 0. 119: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/find/finder_online.cpp.stdout", "None". 118: Standard output was as expected. 118: Standard error was as expected. 117: Return code was 0. 117: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp.stdout", "None". 119: Standard output was as expected. 119: Standard error was as expected. 117: Standard output was as expected. 117: Standard error was as expected. 115/397 Test #117: test_demo_dox_consensus_consensus_alignment ....................................... Passed 0.30 sec test 120 Start 120: test_demo_dox_graph_algorithms_all_pairs_shortest_path 120: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_all_pairs_shortest_path" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp.stdout" 120: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 120: Test timeout computed to be: 10000000 116/397 Test #118: test_demo_dox_find_finder_index ................................................... Passed 0.30 sec 117/397 Test #119: test_demo_dox_find_finder_online .................................................. Passed 0.16 sec test 121 Start 121: test_demo_dox_graph_algorithms_bellman_ford_algorithm 121: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_bellman_ford_algorithm" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp.stdout" 121: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 121: Test timeout computed to be: 10000000 test 122 Start 122: test_demo_dox_graph_algorithms_breadth_first_search 122: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_breadth_first_search" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/breadth_first_search.cpp.stdout" 122: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 122: Test timeout computed to be: 10000000 121: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 120: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 120: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 122: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 122: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 121: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 120: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_all_pairs_shortest_path. 120: Return code was 0. 120: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp.stdout", "None". 121: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_bellman_ford_algorithm. 121: Return code was 0. 121: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp.stdout", "None". 120: Standard output was as expected. 120: Standard error was as expected. 122: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_breadth_first_search. 121: Standard output was as expected. 121: Standard error was as expected. 118/397 Test #120: test_demo_dox_graph_algorithms_all_pairs_shortest_path ............................ Passed 0.18 sec test 123 Start 123: test_demo_dox_graph_algorithms_dag_shortest_path 123: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_dag_shortest_path" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp.stdout" 123: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 123: Test timeout computed to be: 10000000 122: Return code was 0. 122: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/breadth_first_search.cpp.stdout", "None". 122: Standard output was as expected. 122: Standard error was as expected. 119/397 Test #121: test_demo_dox_graph_algorithms_bellman_ford_algorithm ............................. Passed 0.19 sec test 124 Start 124: test_demo_dox_graph_algorithms_depth_first_search 124: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_depth_first_search" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/depth_first_search.cpp.stdout" 124: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 124: Test timeout computed to be: 10000000 120/397 Test #122: test_demo_dox_graph_algorithms_breadth_first_search ............................... Passed 0.20 sec test 125 Start 125: test_demo_dox_graph_algorithms_dijkstra 125: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_dijkstra" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dijkstra.cpp.stdout" 125: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 125: Test timeout computed to be: 10000000 124: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 124: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 123: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 123: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 125: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 125: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 124: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_depth_first_search. 124: Return code was 0. 124: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/depth_first_search.cpp.stdout", "None". 123: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_dag_shortest_path. 124: Standard output was as expected. 124: Standard error was as expected. 125: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_dijkstra. 123: Return code was 0. 123: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp.stdout", "None". 121/397 Test #124: test_demo_dox_graph_algorithms_depth_first_search ................................. Passed 0.15 sec test 126 Start 126: test_demo_dox_graph_algorithms_floyd_warshall_algorithm 126: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_floyd_warshall_algorithm" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp.stdout" 126: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 126: Test timeout computed to be: 10000000 123: Standard output was as expected. 123: Standard error was as expected. 126: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 126: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 122/397 Test #123: test_demo_dox_graph_algorithms_dag_shortest_path .................................. Passed 0.21 sec test 127 Start 127: test_demo_dox_graph_algorithms_ford_fulkerson_algorithm 127: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_ford_fulkerson_algorithm" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.stdout" 127: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 127: Test timeout computed to be: 10000000 125: Return code was 0. 125: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dijkstra.cpp.stdout", "None". 126: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_floyd_warshall_algorithm. 125: Standard output was as expected. 125: Standard error was as expected. 127: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 127: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 123/397 Test #125: test_demo_dox_graph_algorithms_dijkstra ........................................... Passed 0.21 sec test 128 Start 128: test_demo_dox_graph_algorithms_kruskals_algorithm 128: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_kruskals_algorithm" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/kruskals_algorithm.cpp.stdout" 128: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 128: Test timeout computed to be: 10000000 126: Return code was 0. 126: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp.stdout", "None". 126: Standard output was as expected. 126: Standard error was as expected. 127: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_ford_fulkerson_algorithm. 124/397 Test #126: test_demo_dox_graph_algorithms_floyd_warshall_algorithm ........................... Passed 0.13 sec test 129 Start 129: test_demo_dox_graph_algorithms_prims_algorithm 129: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_prims_algorithm" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/prims_algorithm.cpp.stdout" 129: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 129: Test timeout computed to be: 10000000 128: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 128: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 127: Return code was 0. 127: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.stdout", "None". 129: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 129: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 127: Standard output was as expected. 127: Standard error was as expected. 125/397 Test #127: test_demo_dox_graph_algorithms_ford_fulkerson_algorithm ........................... Passed 0.16 sec test 130 Start 130: test_demo_dox_graph_algorithms_strongly_connected_components 130: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_strongly_connected_components" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/strongly_connected_components.cpp.stdout" 130: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 130: Test timeout computed to be: 10000000 129: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_prims_algorithm. 130: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 130: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 128: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_kruskals_algorithm. 129: Return code was 0. 129: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/prims_algorithm.cpp.stdout", "None". 129: Standard output was as expected. 129: Standard error was as expected. 126/397 Test #129: test_demo_dox_graph_algorithms_prims_algorithm .................................... Passed 0.13 sec test 131 Start 131: test_demo_dox_graph_algorithms_topological_sort 131: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_topological_sort" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/topological_sort.cpp.stdout" 131: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 131: Test timeout computed to be: 10000000 130: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_strongly_connected_components. 128: Return code was 0. 128: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/kruskals_algorithm.cpp.stdout", "None". 131: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 131: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 130: Return code was 0. 130: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/strongly_connected_components.cpp.stdout", "None". 128: Standard output was as expected. 128: Standard error was as expected. 127/397 Test #128: test_demo_dox_graph_algorithms_kruskals_algorithm ................................. Passed 0.23 sec test 132 Start 132: test_demo_dox_graph_algorithms_transitive_closure 132: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_transitive_closure" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/transitive_closure.cpp.stdout" 132: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 132: Test timeout computed to be: 10000000 130: Standard output was as expected. 130: Standard error was as expected. 131: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_topological_sort. 128/397 Test #130: test_demo_dox_graph_algorithms_strongly_connected_components ...................... Passed 0.14 sec test 133 Start 133: test_demo_dox_graph_types_graph_algo_dijkstra 133: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_types_graph_algo_dijkstra" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_types/graph_algo_dijkstra.cpp.stdout" 133: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 133: Test timeout computed to be: 10000000 132: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 132: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 133: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 133: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 131: Return code was 0. 131: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/topological_sort.cpp.stdout", "None". 132: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_algorithms_transitive_closure. 131: Standard output was as expected. 131: Standard error was as expected. 129/397 Test #131: test_demo_dox_graph_algorithms_topological_sort ................................... Passed 0.13 sec test 134 Start 134: test_demo_dox_index_begin_atEnd_representative 134: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_begin_atEnd_representative" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp.stdout" 134: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 134: Test timeout computed to be: 10000000 132: Return code was 0. 132: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/transitive_closure.cpp.stdout", "None". 132: Standard output was as expected. 132: Standard error was as expected. 133: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_graph_types_graph_algo_dijkstra. 130/397 Test #132: test_demo_dox_graph_algorithms_transitive_closure ................................. Passed 0.13 sec test 135 Start 135: test_demo_dox_index_counting 135: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_counting" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp.stdout" 135: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 135: Test timeout computed to be: 10000000 134: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 134: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 133: Return code was 0. 133: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/graph_types/graph_algo_dijkstra.cpp.stdout", "None". 133: Standard output was as expected. 133: Standard error was as expected. 134: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_begin_atEnd_representative. 134: Return code was 0. 134: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp.stdout", "None". 131/397 Test #133: test_demo_dox_graph_types_graph_algo_dijkstra ..................................... Passed 0.13 sec test 136 Start 136: test_demo_dox_index_finder 136: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_finder" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp.stdout" 136: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 136: Test timeout computed to be: 10000000 134: Standard output was as expected. 134: Standard error was as expected. 135: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 135: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 136: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 136: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 132/397 Test #134: test_demo_dox_index_begin_atEnd_representative .................................... Passed 0.09 sec test 137 Start 137: test_demo_dox_index_getOccurrences_getFrequency_range_getFibre 137: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.stdout" 137: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 137: Test timeout computed to be: 10000000 137: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 137: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 136: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_finder. 136: Return code was 0. 136: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp.stdout", "None". 135: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_counting. 136: Standard output was as expected. 136: Standard error was as expected. 135: Return code was 0. 135: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/counting.cpp.stdout", "None". 133/397 Test #136: test_demo_dox_index_finder ........................................................ Passed 0.08 sec test 138 Start 138: test_demo_dox_index_iterator 138: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_iterator" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp.stdout" 138: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 138: Test timeout computed to be: 10000000 135: Standard output was as expected. 135: Standard error was as expected. 137: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre. 134/397 Test #135: test_demo_dox_index_counting ...................................................... Passed 0.12 sec test 139 Start 139: test_demo_dox_index_iterator_short 139: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_iterator_short" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp.stdout" 139: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 139: Test timeout computed to be: 10000000 137: Return code was 0. 137: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.stdout", "None". 137: Standard output was as expected. 137: Standard error was as expected. 138: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 138: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 135/397 Test #137: test_demo_dox_index_getOccurrences_getFrequency_range_getFibre .................... Passed 0.09 sec test 140 Start 140: test_demo_dox_index_length_countSequences 140: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_length_countSequences" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp.stdout" 140: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 140: Test timeout computed to be: 10000000 138: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_iterator. 138: Return code was 0. 138: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp.stdout", "None". 139: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 139: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 138: Standard output was as expected. 138: Standard error was as expected. 140: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 140: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 136/397 Test #138: test_demo_dox_index_iterator ...................................................... Passed 0.08 sec test 141 Start 141: test_demo_dox_index_mummy 141: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_mummy" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp.stdout" 141: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 141: Test timeout computed to be: 10000000 139: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_iterator_short. 141: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 139: Return code was 0. 139: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp.stdout", "None". 141: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 139: Standard output was as expected. 139: Standard error was as expected. 137/397 Test #139: test_demo_dox_index_iterator_short ................................................ Passed 0.11 sec test 142 Start 142: test_demo_dox_index_open_save 142: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_open_save" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp.stdout" 142: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 142: Test timeout computed to be: 10000000 142: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 142: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 140: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_length_countSequences. 141: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_mummy. 140: Return code was 0. 140: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp.stdout", "None". 142: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_open_save. 140: Standard output was as expected. 140: Standard error was as expected. 142: Return code was 0. 142: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp.stdout", "None". 138/397 Test #140: test_demo_dox_index_length_countSequences ......................................... Passed 0.14 sec test 143 Start 143: test_demo_dox_index_sufarray 143: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_sufarray" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/sufarray.cpp.stdout" 143: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 143: Test timeout computed to be: 10000000 141: Return code was 0. 141: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp.stdout", "None". 142: Standard output was as expected. 142: Standard error was as expected. 141: Standard output was as expected. 141: Standard error was as expected. 143: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 143: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 139/397 Test #141: test_demo_dox_index_mummy ......................................................... Passed 0.13 sec 140/397 Test #142: test_demo_dox_index_open_save ..................................................... Passed 0.08 sec test 144 Start 144: test_demo_dox_index_textAt_indexText_saAt_indexRequire 144: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_textAt_indexText_saAt_indexRequire" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp.stdout" 144: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 144: Test timeout computed to be: 10000000 test 145 Start 145: test_demo_dox_misc_enumerate_strings 145: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_misc_enumerate_strings" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/enumerate_strings.cpp.stdout" 145: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 145: Test timeout computed to be: 10000000 145: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 145: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 144: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 144: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 143: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_sufarray. 143: Return code was 0. 143: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/sufarray.cpp.stdout", "None". 143: Standard output was as expected. 143: Standard error was as expected. 145: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_misc_enumerate_strings. 141/397 Test #143: test_demo_dox_index_sufarray ...................................................... Passed 0.13 sec test 146 Start 146: test_demo_dox_misc_name_store_cache 146: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_misc_name_store_cache" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/name_store_cache.cpp.stdout" 146: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 146: Test timeout computed to be: 10000000 145: Return code was 0. 145: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/enumerate_strings.cpp.stdout", "None". 145: Standard output was as expected. 145: Standard error was as expected. 142/397 Test #145: test_demo_dox_misc_enumerate_strings .............................................. Passed 0.09 sec test 147 Start 147: test_demo_dox_modifier_cyclic_shape 147: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_cyclic_shape" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp.stdout" 147: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 147: Test timeout computed to be: 10000000 146: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 146: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 147: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 147: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 144: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_index_textAt_indexText_saAt_indexRequire. 144: Return code was 0. 144: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp.stdout", "None". 144: Standard output was as expected. 144: Standard error was as expected. 143/397 Test #144: test_demo_dox_index_textAt_indexText_saAt_indexRequire ............................ Passed 0.20 sec test 148 Start 148: test_demo_dox_modifier_modified_string 148: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_modified_string" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string.cpp.stdout" 148: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 148: Test timeout computed to be: 10000000 147: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_cyclic_shape. 146: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_misc_name_store_cache. 146: Return code was 0. 146: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/misc/name_store_cache.cpp.stdout", "None". 148: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 148: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 146: Standard output was as expected. 146: Standard error was as expected. 147: Return code was 0. 147: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp.stdout", "None". 147: Standard output was as expected. 147: Standard error was as expected. 144/397 Test #146: test_demo_dox_misc_name_store_cache ............................................... Passed 0.15 sec test 149 Start 149: test_demo_dox_modifier_modified_string_mod_view 149: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_modified_string_mod_view" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_mod_view.cpp.stdout" 149: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 149: Test timeout computed to be: 10000000 145/397 Test #147: test_demo_dox_modifier_cyclic_shape ............................................... Passed 0.13 sec test 150 Start 150: test_demo_dox_modifier_modified_string_nested 150: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_modified_string_nested" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp.stdout" 150: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 150: Test timeout computed to be: 10000000 149: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 149: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 148: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_modified_string. 150: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 150: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 148: Return code was 0. 148: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string.cpp.stdout", "None". 148: Standard output was as expected. 148: Standard error was as expected. 146/397 Test #148: test_demo_dox_modifier_modified_string ............................................ Passed 0.14 sec test 151 Start 151: test_demo_dox_parallel_queue_example 151: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_parallel_queue_example" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/parallel/queue_example.cpp.stdout" 151: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 151: Test timeout computed to be: 10000000 149: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_modified_string_mod_view. 149: Return code was 0. 149: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_mod_view.cpp.stdout", "None". 149: Standard output was as expected. 149: Standard error was as expected. 147/397 Test #149: test_demo_dox_modifier_modified_string_mod_view ................................... Passed 0.12 sec test 152 Start 152: test_demo_dox_parallel_splitter_example 152: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_parallel_splitter_example" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/parallel/splitter_example.cpp.stdout" 152: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 152: Test timeout computed to be: 10000000 151: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 151: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 150: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_modifier_modified_string_nested. 150: Return code was 0. 150: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp.stdout", "None". 150: Standard output was as expected. 150: Standard error was as expected. 148/397 Test #150: test_demo_dox_modifier_modified_string_nested ..................................... Passed 0.15 sec test 153 Start 153: test_demo_dox_score_score 153: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_score_score" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp.stdout" 153: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 153: Test timeout computed to be: 10000000 151: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_parallel_queue_example. 151: Return code was 0. 151: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/parallel/queue_example.cpp.stdout", "None". 152: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 152: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 151: Standard output was as expected. 151: Standard error was as expected. 149/397 Test #151: test_demo_dox_parallel_queue_example .............................................. Passed 0.11 sec test 154 Start 154: test_demo_dox_seeds_seeds_chaining 154: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_seeds_seeds_chaining" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp.stdout" 154: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 154: Test timeout computed to be: 10000000 154: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 154: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 153: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 153: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 152: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_parallel_splitter_example. 154: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_seeds_seeds_chaining. 154: Return code was 0. 154: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp.stdout", "None". 152: Return code was 0. 152: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/parallel/splitter_example.cpp.stdout", "None". 154: Standard output was as expected. 154: Standard error was as expected. 150/397 Test #154: test_demo_dox_seeds_seeds_chaining ................................................ Passed 0.10 sec test 155 Start 155: test_demo_dox_seeds_seeds_extension 155: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_seeds_seeds_extension" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp.stdout" 155: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 155: Test timeout computed to be: 10000000 152: Standard output was as expected. 152: Standard error was as expected. 151/397 Test #152: test_demo_dox_parallel_splitter_example ........................................... Passed 0.21 sec test 156 Start 156: test_demo_dox_seq_io_fai_index_example 156: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_seq_io_fai_index_example" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seq_io/fai_index_example.cpp.stdout" 156: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 156: Test timeout computed to be: 10000000 153: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_score_score. 153: Return code was 0. 153: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp.stdout", "None". 153: Standard output was as expected. 153: Standard error was as expected. 155: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 155: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 152/397 Test #153: test_demo_dox_score_score ......................................................... Passed 0.21 sec test 157 Start 157: test_demo_dox_sequence_container_view_zip 157: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_sequence_container_view_zip" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/container_view_zip.cpp.stdout" 157: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 157: Test timeout computed to be: 10000000 156: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 156: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 157: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 157: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 155: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_seeds_seeds_extension. 155: Return code was 0. 155: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp.stdout", "None". 156: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_seq_io_fai_index_example. 157: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_sequence_container_view_zip. 157: Return code was 0. 157: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/container_view_zip.cpp.stdout", "None". 155: Standard output was as expected. 155: Standard error was as expected. 153/397 Test #155: test_demo_dox_seeds_seeds_extension ............................................... Passed 0.14 sec test 158 Start 158: test_demo_dox_sequence_string2 158: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_sequence_string2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string2.cpp.stdout" 158: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 158: Test timeout computed to be: 10000000 157: Standard output was as expected. 157: Standard error was as expected. 156: Return code was 0. 156: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/seq_io/fai_index_example.cpp.stdout", "None". 156: Standard output was as expected. 154/397 Test #157: test_demo_dox_sequence_container_view_zip ......................................... Passed 0.08 sec test 159 Start 159: test_demo_dox_sequence_stringset 159: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_sequence_stringset" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/stringset.cpp.stdout" 159: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 159: Test timeout computed to be: 10000000 156: Standard error was as expected. 158: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 158: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 155/397 Test #156: test_demo_dox_seq_io_fai_index_example ............................................ Passed 0.14 sec test 160 Start 160: test_demo_dox_stream_lexical_cast 160: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_stream_lexical_cast" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/stream/lexical_cast.cpp.stdout" 160: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 160: Test timeout computed to be: 10000000 160: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 160: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 159: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 159: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 160: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_stream_lexical_cast. 160: Return code was 0. 160: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/stream/lexical_cast.cpp.stdout", "None". 158: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_sequence_string2. 160: Standard output was as expected. 160: Standard error was as expected. 158: Return code was 0. 158: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/string2.cpp.stdout", "None". 158: Standard output was as expected. 158: Standard error was as expected. 156/397 Test #158: test_demo_dox_sequence_string2 .................................................... Passed 0.12 sec 157/397 Test #160: test_demo_dox_stream_lexical_cast ................................................. Passed 0.09 sec test 161 Start 161: test_demo_howto_align_gaps_clipping 161: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_align_gaps_clipping" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp.stdout" 161: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 161: Test timeout computed to be: 10000000 test 162 Start 162: test_demo_howto_custom_file_endings 162: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_custom_file_endings" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp.stdout" 162: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 162: Test timeout computed to be: 10000000 159: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_dox_sequence_stringset. 159: Return code was 0. 159: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/dox/sequence/stringset.cpp.stdout", "None". 159: Standard output was as expected. 159: Standard error was as expected. 162: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 162: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 161: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 161: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 158/397 Test #159: test_demo_dox_sequence_stringset .................................................. Passed 0.15 sec test 163 Start 163: test_demo_howto_filter_similar_sequences 163: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_filter_similar_sequences" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp.stdout" "--stderr-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp.stderr" 163: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 163: Test timeout computed to be: 10000000 162: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_custom_file_endings. 163: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 162: Return code was 0. 162: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp.stdout", "None". 163: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 162: Standard output was as expected. 162: Standard error was as expected. 159/397 Test #162: test_demo_howto_custom_file_endings ............................................... Passed 0.12 sec test 164 Start 164: test_demo_howto_scores_init_score 164: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_scores_init_score" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/init_score.cpp.stdout" 164: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 164: Test timeout computed to be: 10000000 161: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_align_gaps_clipping. 163: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_filter_similar_sequences. 164: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 164: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 163: Return code was 0. 163: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp.stdout", "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp.stderr". 161: Return code was 0. 161: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp.stdout", "None". 163: Standard output was as expected. 163: Standard error was as expected. 160/397 Test #163: test_demo_howto_filter_similar_sequences .......................................... Passed 0.18 sec test 165 Start 165: test_demo_howto_scores_load_score 165: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_scores_load_score" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp.stdout" 165: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 165: Test timeout computed to be: 10000000 161: Standard output was as expected. 161: Standard error was as expected. 161/397 Test #161: test_demo_howto_align_gaps_clipping ............................................... Passed 0.25 sec test 166 Start 166: test_demo_tutorial_a_first_example_basic_code 166: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_basic_code" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp.stdout" 166: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 166: Test timeout computed to be: 10000000 164: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_scores_init_score. 164: Return code was 0. 164: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/init_score.cpp.stdout", "None". 164: Standard output was as expected. 164: Standard error was as expected. 165: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 165: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 166: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 166: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 162/397 Test #164: test_demo_howto_scores_init_score ................................................. Passed 0.19 sec test 167 Start 167: test_demo_tutorial_a_first_example_basic_code_detailed 167: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_basic_code_detailed" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp.stdout" 167: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 167: Test timeout computed to be: 10000000 165: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_howto_scores_load_score. 167: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 165: Return code was 0. 165: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp.stdout", "None". 166: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_basic_code. 166: Return code was 0. 166: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp.stdout", "None". 165: Standard output was as expected. 165: Standard error was as expected. 167: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 166: Standard output was as expected. 166: Standard error was as expected. 163/397 Test #165: test_demo_howto_scores_load_score ................................................. Passed 0.15 sec test 168 Start 168: test_demo_tutorial_a_first_example_code_encapsulation 168: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_code_encapsulation" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/code_encapsulation.cpp.stdout" 168: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 168: Test timeout computed to be: 10000000 164/397 Test #166: test_demo_tutorial_a_first_example_basic_code ..................................... Passed 0.15 sec test 169 Start 169: test_demo_tutorial_a_first_example_final_result 169: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_final_result" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/final_result.cpp.stdout" 169: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 169: Test timeout computed to be: 10000000 168: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 168: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 167: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_basic_code_detailed. 168: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_code_encapsulation. 169: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 169: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 167: Return code was 0. 167: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp.stdout", "None". 167: Standard output was as expected. 167: Standard error was as expected. 168: Return code was 0. 168: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/code_encapsulation.cpp.stdout", "None". 168: Standard output was as expected. 168: Standard error was as expected. 165/397 Test #167: test_demo_tutorial_a_first_example_basic_code_detailed ............................ Passed 0.18 sec test 170 Start 170: test_demo_tutorial_a_first_example_solution_1 170: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_1.cpp.stdout" 170: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 170: Test timeout computed to be: 10000000 166/397 Test #168: test_demo_tutorial_a_first_example_code_encapsulation ............................. Passed 0.13 sec test 171 Start 171: test_demo_tutorial_a_first_example_solution_2 171: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_2.cpp.stdout" 171: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 171: Test timeout computed to be: 10000000 170: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 170: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 169: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_final_result. 170: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_1. 171: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 171: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 169: Return code was 0. 169: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/final_result.cpp.stdout", "None". 169: Standard output was as expected. 169: Standard error was as expected. 170: Return code was 0. 170: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_1.cpp.stdout", "None". 167/397 Test #169: test_demo_tutorial_a_first_example_final_result ................................... Passed 0.19 sec test 172 Start 172: test_demo_tutorial_a_first_example_solution_3 172: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_3.cpp.stdout" 172: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 172: Test timeout computed to be: 10000000 170: Standard output was as expected. 170: Standard error was as expected. 168/397 Test #170: test_demo_tutorial_a_first_example_solution_1 ..................................... Passed 0.13 sec test 173 Start 173: test_demo_tutorial_a_first_example_solution_4 173: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4.cpp.stdout" 173: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 173: Test timeout computed to be: 10000000 171: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_2. 172: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 172: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 171: Return code was 0. 171: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_2.cpp.stdout", "None". 171: Standard output was as expected. 171: Standard error was as expected. 173: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 173: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 169/397 Test #171: test_demo_tutorial_a_first_example_solution_2 ..................................... Passed 0.18 sec test 174 Start 174: test_demo_tutorial_a_first_example_solution_5 174: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_5.cpp.stdout" 174: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 174: Test timeout computed to be: 10000000 174: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 174: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 173: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_4. 173: Return code was 0. 173: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4.cpp.stdout", "None". 172: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_3. 173: Standard output was as expected. 173: Standard error was as expected. 170/397 Test #173: test_demo_tutorial_a_first_example_solution_4 ..................................... Passed 0.16 sec test 175 Start 175: test_demo_tutorial_a_first_example_solution_6 175: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_6" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp.stdout" 175: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 175: Test timeout computed to be: 10000000 172: Return code was 0. 172: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_3.cpp.stdout", "None". 174: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_5. 174: Return code was 0. 174: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_5.cpp.stdout", "None". 174: Standard output was as expected. 174: Standard error was as expected. 172: Standard output was as expected. 172: Standard error was as expected. 171/397 Test #174: test_demo_tutorial_a_first_example_solution_5 ..................................... Passed 0.13 sec test 176 Start 176: test_demo_tutorial_alignment_align 176: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_align" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp.stdout" 176: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 176: Test timeout computed to be: 10000000 175: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 175: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 172/397 Test #172: test_demo_tutorial_a_first_example_solution_3 ..................................... Passed 0.24 sec test 177 Start 177: test_demo_tutorial_alignment_align_assignment1 177: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_align_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align_assignment1.cpp.stdout" 177: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 177: Test timeout computed to be: 10000000 176: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 176: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 176: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_align. 176: Return code was 0. 176: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp.stdout", "None". 177: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 177: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 176: Standard output was as expected. 176: Standard error was as expected. 173/397 Test #176: test_demo_tutorial_alignment_align ................................................ Passed 0.07 sec test 178 Start 178: test_demo_tutorial_alignment_graph 178: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_graph" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph.cpp.stdout" 178: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 178: Test timeout computed to be: 10000000 178: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 178: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 178: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_graph. 178: Return code was 0. 178: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph.cpp.stdout", "None". 178: Standard output was as expected. 178: Standard error was as expected. 177: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_align_assignment1. 174/397 Test #178: test_demo_tutorial_alignment_graph ................................................ Passed 0.05 sec test 179 Start 179: test_demo_tutorial_alignment_graph_assignment1 179: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_graph_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph_assignment1.cpp.stdout" 179: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 179: Test timeout computed to be: 10000000 177: Return code was 0. 177: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align_assignment1.cpp.stdout", "None". 175: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_a_first_example_solution_6. 175: Return code was 0. 175: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp.stdout", "None". 177: Standard output was as expected. 177: Standard error was as expected. 179: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 179: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 175: Standard output was as expected. 175: Standard error was as expected. 175/397 Test #177: test_demo_tutorial_alignment_align_assignment1 .................................... Passed 0.12 sec test 180 Start 180: test_demo_tutorial_alignment_scoring_scheme_affine_dgs 180: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_scoring_scheme_affine_dgs" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp.stdout" 180: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 180: Test timeout computed to be: 10000000 176/397 Test #175: test_demo_tutorial_a_first_example_solution_6 ..................................... Passed 0.19 sec test 181 Start 181: test_demo_tutorial_alignment_scoring_scheme_matrix 181: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_scoring_scheme_matrix" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp.stdout" 181: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 181: Test timeout computed to be: 10000000 180: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 180: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 181: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 181: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 179: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_graph_assignment1. 179: Return code was 0. 179: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/graph_assignment1.cpp.stdout", "None". 180: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_scoring_scheme_affine_dgs. 181: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_scoring_scheme_matrix. 180: Return code was 0. 180: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp.stdout", "None". 179: Standard output was as expected. 179: Standard error was as expected. 181: Return code was 0. 181: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp.stdout", "None". 180: Standard output was as expected. 177/397 Test #179: test_demo_tutorial_alignment_graph_assignment1 .................................... Passed 0.11 sec test 182 Start 182: test_demo_tutorial_alignment_scoring_scheme_simple 182: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_scoring_scheme_simple" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_simple.cpp.stdout" 182: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 182: Test timeout computed to be: 10000000 180: Standard error was as expected. 181: Standard output was as expected. 181: Standard error was as expected. 178/397 Test #180: test_demo_tutorial_alignment_scoring_scheme_affine_dgs ............................ Passed 0.09 sec test 183 Start 183: test_demo_tutorial_alphabets_assignment_1 183: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_assignment_1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1.cpp.stdout" 183: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 183: Test timeout computed to be: 10000000 179/397 Test #181: test_demo_tutorial_alignment_scoring_scheme_matrix ................................ Passed 0.09 sec test 184 Start 184: test_demo_tutorial_alphabets_assignment_1_solution 184: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_assignment_1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1_solution.cpp.stdout" 184: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 184: Test timeout computed to be: 10000000 182: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 182: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 183: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 183: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 184: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 184: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 182: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alignment_scoring_scheme_simple. 182: Return code was 0. 182: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_simple.cpp.stdout", "None". 183: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_assignment_1. 183: Return code was 0. 183: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1.cpp.stdout", "None". 183: Standard output was as expected. 183: Standard error was as expected. 182: Standard output was as expected. 182: Standard error was as expected. 180/397 Test #182: test_demo_tutorial_alignment_scoring_scheme_simple ................................ Passed 0.09 sec test 185 Start 185: test_demo_tutorial_alphabets_example_bitsPerValue 185: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_example_bitsPerValue" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_bitsPerValue.cpp.stdout" 185: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 185: Test timeout computed to be: 10000000 181/397 Test #183: test_demo_tutorial_alphabets_assignment_1 ......................................... Passed 0.08 sec test 186 Start 186: test_demo_tutorial_alphabets_example_ordValue 186: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_example_ordValue" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_ordValue.cpp.stdout" 186: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 186: Test timeout computed to be: 10000000 185: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 185: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 184: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_assignment_1_solution. 184: Return code was 0. 184: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1_solution.cpp.stdout", "None". 186: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 186: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 184: Standard output was as expected. 184: Standard error was as expected. 182/397 Test #184: test_demo_tutorial_alphabets_assignment_1_solution ................................ Passed 0.13 sec test 187 Start 187: test_demo_tutorial_alphabets_example_size 187: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_example_size" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_size.cpp.stdout" 187: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 187: Test timeout computed to be: 10000000 185: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_example_bitsPerValue. 185: Return code was 0. 185: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_bitsPerValue.cpp.stdout", "None". 187: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 187: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 185: Standard output was as expected. 185: Standard error was as expected. 186: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_example_ordValue. 187: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_alphabets_example_size. 187: Return code was 0. 187: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_size.cpp.stdout", "None". 186: Return code was 0. 186: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_ordValue.cpp.stdout", "None". 186: Standard output was as expected. 186: Standard error was as expected. 183/397 Test #185: test_demo_tutorial_alphabets_example_bitsPerValue ................................. Passed 0.16 sec test 188 Start 188: test_demo_tutorial_background_and_motivation_example 188: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_background_and_motivation_example" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/background_and_motivation/example.cpp.stdout" 188: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 188: Test timeout computed to be: 10000000 187: Standard output was as expected. 187: Standard error was as expected. 184/397 Test #187: test_demo_tutorial_alphabets_example_size ......................................... Passed 0.10 sec test 189 Start 189: test_demo_tutorial_basic_techniques_base 189: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basic_techniques_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basic_techniques/base.cpp.stdout" 189: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 189: Test timeout computed to be: 10000000 185/397 Test #186: test_demo_tutorial_alphabets_example_ordValue ..................................... Passed 0.16 sec test 190 Start 190: test_demo_tutorial_basics_allocator 190: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_allocator" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/allocator.cpp.stdout" 190: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 190: Test timeout computed to be: 10000000 189: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 189: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 188: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 188: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 190: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 190: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 188: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_background_and_motivation_example. 188: Return code was 0. 188: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/background_and_motivation/example.cpp.stdout", "None". 188: Standard output was as expected. 188: Standard error was as expected. 186/397 Test #188: test_demo_tutorial_background_and_motivation_example .............................. Passed 0.08 sec test 191 Start 191: test_demo_tutorial_basics_base 191: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/base.cpp.stdout" 191: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 191: Test timeout computed to be: 10000000 189: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basic_techniques_base. 190: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_allocator. 189: Return code was 0. 189: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basic_techniques/base.cpp.stdout", "None". 189: Standard output was as expected. 189: Standard error was as expected. 191: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 191: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 187/397 Test #189: test_demo_tutorial_basic_techniques_base .......................................... Passed 0.12 sec test 192 Start 192: test_demo_tutorial_basics_show_alphabets 192: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_show_alphabets" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/show_alphabets.cpp.stdout" 192: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 192: Test timeout computed to be: 10000000 192: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 192: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 191: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_base. 191: Return code was 0. 191: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/base.cpp.stdout", "None". 191: Standard output was as expected. 191: Standard error was as expected. 188/397 Test #191: test_demo_tutorial_basics_base .................................................... Passed 0.11 sec test 193 Start 193: test_demo_tutorial_basics_strings 193: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_strings" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp.stdout" 193: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 193: Test timeout computed to be: 10000000 193: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 193: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 192: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_show_alphabets. 192: Return code was 0. 192: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/show_alphabets.cpp.stdout", "None". 192: Standard output was as expected. 192: Standard error was as expected. 189/397 Test #192: test_demo_tutorial_basics_show_alphabets .......................................... Passed 0.11 sec test 194 Start 194: test_demo_tutorial_bed_io_base 194: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/base.cpp.stdout" 194: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 194: Test timeout computed to be: 10000000 194: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 194: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 193: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_basics_strings. 193: Return code was 0. 193: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp.stdout", "None". 193: Standard output was as expected. 193: Standard error was as expected. 194: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_base. 194: Return code was 0. 194: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/base.cpp.stdout", "None". 194: Standard output was as expected. 194: Standard error was as expected. 190/397 Test #193: test_demo_tutorial_basics_strings ................................................. Passed 0.11 sec test 195 Start 195: test_demo_tutorial_bed_io_example1 195: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp.stdout" 195: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 195: Test timeout computed to be: 10000000 191/397 Test #194: test_demo_tutorial_bed_io_base .................................................... Passed 0.06 sec test 196 Start 196: test_demo_tutorial_bed_io_solution1 196: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution1.cpp.stdout" 196: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 196: Test timeout computed to be: 10000000 195: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 195: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 196: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 196: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 190: Return code was 0. 190: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/basics/allocator.cpp.stdout", "None". 190: Standard output was as expected. 190: Standard error was as expected. 192/397 Test #190: test_demo_tutorial_basics_allocator ............................................... Passed 0.38 sec test 197 Start 197: test_demo_tutorial_bed_io_solution2 197: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp.stdout" 197: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 197: Test timeout computed to be: 10000000 196: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_solution1. 195: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_example1. 196: Return code was 0. 196: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution1.cpp.stdout", "None". 196: Standard output was as expected. 196: Standard error was as expected. 197: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 197: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 195: Return code was 0. 195: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp.stdout", "None". 195: Standard output was as expected. 195: Standard error was as expected. 193/397 Test #196: test_demo_tutorial_bed_io_solution1 ............................................... Passed 0.14 sec test 198 Start 198: test_demo_tutorial_bed_io_solution3 198: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution3.cpp.stdout" 198: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 198: Test timeout computed to be: 10000000 194/397 Test #195: test_demo_tutorial_bed_io_example1 ................................................ Passed 0.18 sec test 199 Start 199: test_demo_tutorial_blast_io_read_assignment 199: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_blast_io_read_assignment" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp.stdout" "--stderr-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp.stderr" 199: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 199: Test timeout computed to be: 10000000 197: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_solution2. 197: Return code was 0. 197: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp.stdout", "None". 198: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 198: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 197: Standard output was as expected. 197: Standard error was as expected. 199: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 199: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 195/397 Test #197: test_demo_tutorial_bed_io_solution2 ............................................... Passed 0.14 sec test 200 Start 200: test_demo_tutorial_blast_io_write_assignment 200: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_blast_io_write_assignment" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp.stdout" "--stderr-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp.stderr" 200: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 200: Test timeout computed to be: 10000000 198: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_bed_io_solution3. 200: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 200: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 198: Return code was 0. 198: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution3.cpp.stdout", "None". 198: Standard output was as expected. 198: Standard error was as expected. 196/397 Test #198: test_demo_tutorial_bed_io_solution3 ............................................... Passed 0.12 sec test 201 Start 201: test_demo_tutorial_consensus_alignment_with_positions 201: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_consensus_alignment_with_positions" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp.stdout" 201: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 201: Test timeout computed to be: 10000000 201: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 201: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 199: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_blast_io_read_assignment. 199: Return code was 0. 199: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp.stdout", "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp.stderr". 200: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_blast_io_write_assignment. 199: Standard output was as expected. 199: Standard error was as expected. 197/397 Test #199: test_demo_tutorial_blast_io_read_assignment ....................................... Passed 0.16 sec test 202 Start 202: test_demo_tutorial_consensus_alignment_without_positions 202: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_consensus_alignment_without_positions" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp.stdout" 202: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 202: Test timeout computed to be: 10000000 200: Return code was 0. 200: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp.stdout", "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/write_assignment.cpp.stderr". 200: Standard output was as expected. 200: Standard error was as expected. 201: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_consensus_alignment_with_positions. 201: Return code was 0. 201: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp.stdout", "None". 198/397 Test #200: test_demo_tutorial_blast_io_write_assignment ...................................... Passed 0.13 sec test 203 Start 203: test_demo_tutorial_file_io_overview_example1 203: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/example1.cpp.stdout" 203: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 203: Test timeout computed to be: 10000000 201: Standard output was as expected. 201: Standard error was as expected. 199/397 Test #201: test_demo_tutorial_consensus_alignment_with_positions ............................. Passed 0.10 sec test 204 Start 204: test_demo_tutorial_file_io_overview_solution1 204: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution1.cpp.stdout" 204: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 204: Test timeout computed to be: 10000000 202: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 204: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 204: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 202: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 203: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 203: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 204: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_solution1. 204: Return code was 0. 204: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution1.cpp.stdout", "None". 204: Standard output was as expected. 204: Standard error was as expected. 202: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_consensus_alignment_without_positions. 200/397 Test #204: test_demo_tutorial_file_io_overview_solution1 ..................................... Passed 0.09 sec test 205 Start 205: test_demo_tutorial_file_io_overview_solution2 205: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution2.cpp.stdout" 205: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 205: Test timeout computed to be: 10000000 202: Return code was 0. 202: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp.stdout", "None". 202: Standard output was as expected. 202: Standard error was as expected. 203: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_example1. 205: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 205: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 201/397 Test #202: test_demo_tutorial_consensus_alignment_without_positions .......................... Passed 0.19 sec test 206 Start 206: test_demo_tutorial_file_io_overview_solution3 206: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution3.cpp.stdout" 206: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 206: Test timeout computed to be: 10000000 206: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 206: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 205: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_solution2. 206: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_file_io_overview_solution3. 205: Return code was 0. 205: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution2.cpp.stdout", "None". 205: Standard output was as expected. 205: Standard error was as expected. 203: Return code was 0. 203: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/example1.cpp.stdout", "None". 203: Standard output was as expected. 203: Standard error was as expected. 202/397 Test #205: test_demo_tutorial_file_io_overview_solution2 ..................................... Passed 0.16 sec test 207 Start 207: test_demo_tutorial_fragment_store_access_aligned_reads 207: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_access_aligned_reads" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp.stdout" 207: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 207: Test timeout computed to be: 10000000 203/397 Test #203: test_demo_tutorial_file_io_overview_example1 ...................................... Passed 0.28 sec test 208 Start 208: test_demo_tutorial_fragment_store_access_aligned_reads2 208: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_access_aligned_reads2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp.stdout" 208: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 208: Test timeout computed to be: 10000000 206: Return code was 0. 206: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution3.cpp.stdout", "None". 207: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 207: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 206: Standard output was as expected. 206: Standard error was as expected. 204/397 Test #206: test_demo_tutorial_file_io_overview_solution3 ..................................... Passed 0.13 sec test 209 Start 209: test_demo_tutorial_fragment_store_base 209: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp.stdout" 209: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 209: Test timeout computed to be: 10000000 208: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 208: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 209: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 209: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 207: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_access_aligned_reads. 208: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_access_aligned_reads2. 209: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_base. 209: Return code was 0. 209: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp.stdout", "None". 209: Standard output was as expected. 209: Standard error was as expected. 205/397 Test #209: test_demo_tutorial_fragment_store_base ............................................ Passed 0.05 sec test 210 Start 210: test_demo_tutorial_fragment_store_display_aligned_reads 210: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_display_aligned_reads" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp.stdout" 210: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 210: Test timeout computed to be: 10000000 210: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 210: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 210: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_fragment_store_display_aligned_reads. 210: Return code was 0. 210: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp.stdout", "None". 208: Return code was 0. 208: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp.stdout", "None". 210: Standard output was as expected. 210: Standard error was as expected. 207: Return code was 0. 207: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp.stdout", "None". 206/397 Test #210: test_demo_tutorial_fragment_store_display_aligned_reads ........................... Passed 0.08 sec test 211 Start 211: test_demo_tutorial_generic_programming_example_hashing 211: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_generic_programming_example_hashing" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/example_hashing.cpp.stdout" 211: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 211: Test timeout computed to be: 10000000 208: Standard output was as expected. 208: Standard error was as expected. 207/397 Test #208: test_demo_tutorial_fragment_store_access_aligned_reads2 ........................... Passed 0.16 sec test 212 Start 212: test_demo_tutorial_generic_programming_template_subclassing 212: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_generic_programming_template_subclassing" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/template_subclassing.cpp.stdout" 212: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 212: Test timeout computed to be: 10000000 207: Standard output was as expected. 207: Standard error was as expected. 211: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 211: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 208/397 Test #207: test_demo_tutorial_fragment_store_access_aligned_reads ............................ Passed 0.18 sec test 213 Start 213: test_demo_tutorial_genome_annotations_assignment_1_hint 213: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_1_hint" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp.stdout" 213: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 213: Test timeout computed to be: 10000000 212: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 212: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 211: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_generic_programming_example_hashing. 211: Return code was 0. 211: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/example_hashing.cpp.stdout", "None". 211: Standard output was as expected. 211: Standard error was as expected. 213: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 213: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 209/397 Test #211: test_demo_tutorial_generic_programming_example_hashing ............................ Passed 0.05 sec test 214 Start 214: test_demo_tutorial_genome_annotations_assignment_1_solution 214: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp.stdout" 214: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 214: Test timeout computed to be: 10000000 212: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_generic_programming_template_subclassing. 214: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 214: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 212: Return code was 0. 212: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/template_subclassing.cpp.stdout", "None". 213: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_1_hint. 212: Standard output was as expected. 212: Standard error was as expected. 210/397 Test #212: test_demo_tutorial_generic_programming_template_subclassing ....................... Passed 0.08 sec test 215 Start 215: test_demo_tutorial_genome_annotations_assignment_2_solution 215: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_2_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp.stdout" 215: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 215: Test timeout computed to be: 10000000 214: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_1_solution. 214: Return code was 0. 214: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp.stdout", "None". 213: Return code was 0. 213: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp.stdout", "None". 213: Standard output was as expected. 213: Standard error was as expected. 211/397 Test #213: test_demo_tutorial_genome_annotations_assignment_1_hint ........................... Passed 0.09 sec test 216 Start 216: test_demo_tutorial_genome_annotations_assignment_3_solution 216: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_3_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp.stdout" 216: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 216: Test timeout computed to be: 10000000 214: Standard output was as expected. 214: Standard error was as expected. 215: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 215: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 212/397 Test #214: test_demo_tutorial_genome_annotations_assignment_1_solution ....................... Passed 0.07 sec test 217 Start 217: test_demo_tutorial_genome_annotations_assignment_4_solution 217: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_4_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp.stdout" 217: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 217: Test timeout computed to be: 10000000 216: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 216: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 217: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 217: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 216: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_3_solution. 215: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_2_solution. 216: Return code was 0. 216: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp.stdout", "None". 215: Return code was 0. 215: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp.stdout", "None". 216: Standard output was as expected. 216: Standard error was as expected. 215: Standard output was as expected. 215: Standard error was as expected. 213/397 Test #216: test_demo_tutorial_genome_annotations_assignment_3_solution ....................... Passed 0.07 sec test 218 Start 218: test_demo_tutorial_genome_annotations_base 218: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp.stdout" 218: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 218: Test timeout computed to be: 10000000 217: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_assignment_4_solution. 214/397 Test #215: test_demo_tutorial_genome_annotations_assignment_2_solution ....................... Passed 0.09 sec test 219 Start 219: test_demo_tutorial_gff_and_gtf_io_base 219: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/base.cpp.stdout" 219: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 219: Test timeout computed to be: 10000000 217: Return code was 0. 217: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp.stdout", "None". 219: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 219: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 218: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 218: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 217: Standard output was as expected. 217: Standard error was as expected. 215/397 Test #217: test_demo_tutorial_genome_annotations_assignment_4_solution ....................... Passed 0.10 sec test 220 Start 220: test_demo_tutorial_gff_and_gtf_io_example1 220: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp.stdout" 220: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 220: Test timeout computed to be: 10000000 220: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 220: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 218: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_genome_annotations_base. 220: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_example1. 219: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_base. 219: Return code was 0. 219: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/base.cpp.stdout", "None". 219: Standard output was as expected. 219: Standard error was as expected. 216/397 Test #219: test_demo_tutorial_gff_and_gtf_io_base ............................................ Passed 0.07 sec test 221 Start 221: test_demo_tutorial_gff_and_gtf_io_example2 221: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_example2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp.stdout" 221: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 221: Test timeout computed to be: 10000000 218: Return code was 0. 218: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp.stdout", "None". 220: Return code was 0. 220: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp.stdout", "None". 218: Standard output was as expected. 218: Standard error was as expected. 220: Standard output was as expected. 220: Standard error was as expected. 217/397 Test #218: test_demo_tutorial_genome_annotations_base ........................................ Passed 0.10 sec test 222 Start 222: test_demo_tutorial_gff_and_gtf_io_solution1 222: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp.stdout" 222: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 222: Test timeout computed to be: 10000000 221: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 221: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 218/397 Test #220: test_demo_tutorial_gff_and_gtf_io_example1 ........................................ Passed 0.07 sec test 223 Start 223: test_demo_tutorial_gff_and_gtf_io_solution2 223: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp.stdout" 223: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 223: Test timeout computed to be: 10000000 222: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 222: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 223: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 223: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 222: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_solution1. 221: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_example2. 221: Return code was 0. 221: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp.stdout", "None". 222: Return code was 0. 222: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution1.cpp.stdout", "None". 223: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_solution2. 222: Standard output was as expected. 221: Standard output was as expected. 221: Standard error was as expected. 222: Standard error was as expected. 223: Return code was 0. 223: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp.stdout", "None". 219/397 Test #221: test_demo_tutorial_gff_and_gtf_io_example2 ........................................ Passed 0.08 sec test 224 Start 224: test_demo_tutorial_gff_and_gtf_io_solution3 224: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution3.cpp.stdout" 224: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 224: Test timeout computed to be: 10000000 220/397 Test #222: test_demo_tutorial_gff_and_gtf_io_solution1 ....................................... Passed 0.06 sec test 225 Start 225: test_demo_tutorial_graph_graph_algo_scc 225: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_graph_algo_scc" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp.stdout" 225: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 225: Test timeout computed to be: 10000000 223: Standard output was as expected. 223: Standard error was as expected. 221/397 Test #223: test_demo_tutorial_gff_and_gtf_io_solution2 ....................................... Passed 0.07 sec test 226 Start 226: test_demo_tutorial_graph_graph_dijkstra 226: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_graph_dijkstra" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp.stdout" 226: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 226: Test timeout computed to be: 10000000 225: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 225: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 224: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 224: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 226: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 226: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 224: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_gff_and_gtf_io_solution3. 225: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_graph_algo_scc. 226: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_graph_dijkstra. 224: Return code was 0. 224: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution3.cpp.stdout", "None". 225: Return code was 0. 225: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp.stdout", "None". 224: Standard output was as expected. 224: Standard error was as expected. 225: Standard output was as expected. 225: Standard error was as expected. 226: Return code was 0. 226: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp.stdout", "None". 222/397 Test #225: test_demo_tutorial_graph_graph_algo_scc ........................................... Passed 0.12 sec test 227 Start 227: test_demo_tutorial_graph_graph_hmm 227: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_graph_hmm" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_hmm.cpp.stdout" 227: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 227: Test timeout computed to be: 10000000 56: BidirectionalFMIndexTest_SearchInStringSet type parameter seqan::Index, seqan::Alloc >, seqan::BidirectionalIndex > > > OK 56: ************************************** 56: Total Tests: 12 56: Skipped: 0 56: Errors: 0 56: ************************************** 226: Standard output was as expected. 226: Standard error was as expected. 223/397 Test #224: test_demo_tutorial_gff_and_gtf_io_solution3 ....................................... Passed 0.14 sec 224/397 Test #226: test_demo_tutorial_graph_graph_dijkstra ........................................... Passed 0.12 sec test 228 Start 228: test_demo_tutorial_graph_solution_1 228: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_solution_1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp.stdout" 228: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 228: Test timeout computed to be: 10000000 test 229 Start 229: test_demo_tutorial_index_iterators_index_assignment1 229: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp.stdout" 229: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 229: Test timeout computed to be: 10000000 225/397 Test #56: test_test_index_bifm .............................................................. Passed 19.90 sec test 230 Start 230: test_demo_tutorial_index_iterators_index_assignment2 230: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp.stdout" 230: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 230: Test timeout computed to be: 10000000 228: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 228: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 230: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 230: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 227: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 227: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 229: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 229: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 230: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment2. 230: Return code was 0. 230: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp.stdout", "None". 228: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_solution_1. 230: Standard output was as expected. 230: Standard error was as expected. 228: Return code was 0. 228: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp.stdout", "None". 227: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_graph_graph_hmm. 229: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment1. 228: Standard output was as expected. 228: Standard error was as expected. 227: Return code was 0. 227: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_hmm.cpp.stdout", "None". 226/397 Test #230: test_demo_tutorial_index_iterators_index_assignment2 .............................. Passed 0.10 sec test 231 Start 231: test_demo_tutorial_index_iterators_index_bidirectional_search 231: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_bidirectional_search" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp.stdout" 231: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 231: Test timeout computed to be: 10000000 229: Return code was 0. 229: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp.stdout", "None". 227: Standard output was as expected. 227: Standard error was as expected. 227/397 Test #227: test_demo_tutorial_graph_graph_hmm ................................................ Passed 0.14 sec test 232 Start 232: test_demo_tutorial_index_iterators_index_preorder 232: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_preorder" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp.stdout" 232: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 232: Test timeout computed to be: 10000000 229: Standard output was as expected. 229: Standard error was as expected. 228/397 Test #228: test_demo_tutorial_graph_solution_1 ............................................... Passed 0.14 sec test 233 Start 233: test_demo_tutorial_index_iterators_index_property_maps 233: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_property_maps" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp.stdout" 233: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 233: Test timeout computed to be: 10000000 231: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 231: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 229/397 Test #229: test_demo_tutorial_index_iterators_index_assignment1 .............................. Passed 0.15 sec test 234 Start 234: test_demo_tutorial_index_iterators_index_search 234: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_search" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp.stdout" 234: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 234: Test timeout computed to be: 10000000 232: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 232: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 233: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 233: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 233: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_property_maps. 234: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 234: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 233: Return code was 0. 233: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp.stdout", "None". 231: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_bidirectional_search. 233: Standard output was as expected. 233: Standard error was as expected. 232: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_preorder. 231: Return code was 0. 231: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp.stdout", "None". 232: Return code was 0. 232: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_preorder.cpp.stdout", "None". 230/397 Test #233: test_demo_tutorial_index_iterators_index_property_maps ............................ Passed 0.10 sec test 235 Start 235: test_demo_tutorial_index_iterators_index_search2 235: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_search2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp.stdout" 235: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 235: Test timeout computed to be: 10000000 231: Standard output was as expected. 231: Standard error was as expected. 232: Standard output was as expected. 232: Standard error was as expected. 231/397 Test #231: test_demo_tutorial_index_iterators_index_bidirectional_search ..................... Passed 0.14 sec test 236 Start 236: test_demo_tutorial_index_iterators_iterator_assignment2 236: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_assignment2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp.stdout" 236: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 236: Test timeout computed to be: 10000000 232/397 Test #232: test_demo_tutorial_index_iterators_index_preorder ................................. Passed 0.13 sec test 237 Start 237: test_demo_tutorial_index_iterators_iterator_solution1 237: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp.stdout" 237: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 237: Test timeout computed to be: 10000000 234: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_search. 234: Return code was 0. 234: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp.stdout", "None". 235: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 235: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 236: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 236: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 234: Standard output was as expected. 234: Standard error was as expected. 237: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 237: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 235: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_index_search2. 235: Return code was 0. 235: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp.stdout", "None". 233/397 Test #234: test_demo_tutorial_index_iterators_index_search ................................... Passed 0.16 sec test 238 Start 238: test_demo_tutorial_index_iterators_iterator_solution2 238: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp.stdout" 238: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 238: Test timeout computed to be: 10000000 235: Standard output was as expected. 235: Standard error was as expected. 234/397 Test #235: test_demo_tutorial_index_iterators_index_search2 .................................. Passed 0.09 sec test 239 Start 239: test_demo_tutorial_index_iterators_iterator_solution3 239: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp.stdout" 239: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 239: Test timeout computed to be: 10000000 237: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution1. 237: Return code was 0. 237: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp.stdout", "None". 236: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_assignment2. 238: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 238: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 237: Standard output was as expected. 237: Standard error was as expected. 236: Return code was 0. 236: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp.stdout", "None". 236: Standard output was as expected. 236: Standard error was as expected. 239: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 239: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 235/397 Test #236: test_demo_tutorial_index_iterators_iterator_assignment2 ........................... Passed 0.12 sec 236/397 Test #237: test_demo_tutorial_index_iterators_iterator_solution1 ............................. Passed 0.11 sec test 240 Start 240: test_demo_tutorial_indexed_fasta_io_base 240: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indexed_fasta_io_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp.stdout" 240: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 240: Test timeout computed to be: 10000000 test 241 Start 241: test_demo_tutorial_indexed_fasta_io_solution1 241: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indexed_fasta_io_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp.stdout" "--stderr-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp.stderr" 241: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 241: Test timeout computed to be: 10000000 240: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 240: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 238: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution2. 241: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 241: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 240: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indexed_fasta_io_base. 239: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution3. 238: Return code was 0. 238: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp.stdout", "None". 239: Return code was 0. 239: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp.stdout", "None". 238: Standard output was as expected. 238: Standard error was as expected. 237/397 Test #238: test_demo_tutorial_index_iterators_iterator_solution2 ............................. Passed 0.13 sec test 242 Start 242: test_demo_tutorial_indexed_fasta_io_solution2 242: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indexed_fasta_io_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp.stdout" "--stderr-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp.stderr" 242: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 242: Test timeout computed to be: 10000000 240: Return code was 0. 240: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp.stdout", "None". 240: Standard output was as expected. 240: Standard error was as expected. 239: Standard output was as expected. 239: Standard error was as expected. 238/397 Test #239: test_demo_tutorial_index_iterators_iterator_solution3 ............................. Passed 0.13 sec test 243 Start 243: test_demo_tutorial_indices_assignment_1 243: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indices_assignment_1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp.stdout" 243: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 243: Test timeout computed to be: 10000000 242: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 242: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 239/397 Test #240: test_demo_tutorial_indexed_fasta_io_base .......................................... Passed 0.10 sec test 244 Start 244: test_demo_tutorial_indices_assignment_2 244: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indices_assignment_2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp.stdout" 244: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 244: Test timeout computed to be: 10000000 243: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 243: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 241: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indexed_fasta_io_solution1. 242: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indexed_fasta_io_solution2. 241: Return code was 0. 241: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp.stdout", "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp.stderr". 243: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indices_assignment_1. 242: Return code was 0. 242: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp.stdout", "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp.stderr". 244: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 244: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 243: Return code was 0. 243: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp.stdout", "None". 243: Standard output was as expected. 243: Standard error was as expected. 241: Standard output was as expected. 241: Standard error was as expected. 240/397 Test #243: test_demo_tutorial_indices_assignment_1 ........................................... Passed 0.06 sec test 245 Start 245: test_demo_tutorial_indices_base 245: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indices_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp.stdout" 245: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 245: Test timeout computed to be: 10000000 242: Standard output was as expected. 242: Standard error was as expected. 241/397 Test #241: test_demo_tutorial_indexed_fasta_io_solution1 ..................................... Passed 0.15 sec test 246 Start 246: test_demo_tutorial_iterators_assignment_1 246: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1.cpp.stdout" 246: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 246: Test timeout computed to be: 10000000 246: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 246: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 242/397 Test #242: test_demo_tutorial_indexed_fasta_io_solution2 ..................................... Passed 0.10 sec test 247 Start 247: test_demo_tutorial_iterators_assignment_1_solution 247: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp.stdout" 247: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 247: Test timeout computed to be: 10000000 245: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 245: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 246: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_1. 246: Return code was 0. 246: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1.cpp.stdout", "None". 245: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indices_base. 246: Standard output was as expected. 246: Standard error was as expected. 245: Return code was 0. 245: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp.stdout", "None". 245: Standard output was as expected. 245: Standard error was as expected. 243/397 Test #245: test_demo_tutorial_indices_base ................................................... Passed 0.06 sec test 248 Start 248: test_demo_tutorial_iterators_assignment_2_solution 248: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_2_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_2_solution.cpp.stdout" 248: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 248: Test timeout computed to be: 10000000 244/397 Test #246: test_demo_tutorial_iterators_assignment_1 ......................................... Passed 0.05 sec test 249 Start 249: test_demo_tutorial_iterators_assignment_3_workshop 249: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_3_workshop" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop.cpp.stdout" 249: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 249: Test timeout computed to be: 10000000 247: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 247: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 244: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_indices_assignment_2. 248: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 249: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 244: Return code was 0. 244: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp.stdout", "None". 249: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 248: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 244: Standard output was as expected. 244: Standard error was as expected. 249: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_3_workshop. 245/397 Test #244: test_demo_tutorial_indices_assignment_2 ........................................... Passed 0.16 sec test 250 Start 250: test_demo_tutorial_iterators_assignment_3_workshop_solution 250: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_3_workshop_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp.stdout" 250: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 250: Test timeout computed to be: 10000000 249: Return code was 0. 249: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop.cpp.stdout", "None". 247: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_1_solution. 250: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 249: Standard output was as expected. 249: Standard error was as expected. 250: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 247: Return code was 0. 247: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp.stdout", "None". 246/397 Test #249: test_demo_tutorial_iterators_assignment_3_workshop ................................ Passed 0.07 sec test 251 Start 251: test_demo_tutorial_iterators_assignment_4_workshop_solution 251: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_4_workshop_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp.stdout" 251: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 251: Test timeout computed to be: 10000000 247: Standard output was as expected. 247: Standard error was as expected. 247/397 Test #247: test_demo_tutorial_iterators_assignment_1_solution ................................ Passed 0.12 sec test 252 Start 252: test_demo_tutorial_iterators_base 252: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/base.cpp.stdout" 252: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 252: Test timeout computed to be: 10000000 251: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 251: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 248: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_2_solution. 250: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_3_workshop_solution. 250: Return code was 0. 250: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp.stdout", "None". 248: Return code was 0. 248: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_2_solution.cpp.stdout", "None". 250: Standard output was as expected. 250: Standard error was as expected. 252: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 252: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 251: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_assignment_4_workshop_solution. 248/397 Test #250: test_demo_tutorial_iterators_assignment_3_workshop_solution ....................... Passed 0.08 sec test 253 Start 253: test_demo_tutorial_iterators_sequence_iterator_demo 253: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_sequence_iterator_demo" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/sequence_iterator_demo.cpp.stdout" 253: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 253: Test timeout computed to be: 10000000 248: Standard output was as expected. 248: Standard error was as expected. 251: Return code was 0. 251: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp.stdout", "None". 249/397 Test #248: test_demo_tutorial_iterators_assignment_2_solution ................................ Passed 0.15 sec test 254 Start 254: test_demo_tutorial_journaled_set_base 254: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/base.cpp.stdout" 254: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 254: Test timeout computed to be: 10000000 251: Standard output was as expected. 251: Standard error was as expected. 250/397 Test #251: test_demo_tutorial_iterators_assignment_4_workshop_solution ....................... Passed 0.08 sec test 255 Start 255: test_demo_tutorial_journaled_set_example_join 255: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_join" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp.stdout" 255: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 255: Test timeout computed to be: 10000000 253: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 253: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 254: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 254: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 253: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_sequence_iterator_demo. 253: Return code was 0. 253: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/sequence_iterator_demo.cpp.stdout", "None". 255: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 255: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 253: Standard output was as expected. 253: Standard error was as expected. 254: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_base. 252: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_iterators_base. 251/397 Test #253: test_demo_tutorial_iterators_sequence_iterator_demo ............................... Passed 0.09 sec test 256 Start 256: test_demo_tutorial_journaled_set_example_journal_string_basic 256: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_journal_string_basic" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp.stdout" 256: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 256: Test timeout computed to be: 10000000 252: Return code was 0. 252: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/iterators/base.cpp.stdout", "None". 252: Standard output was as expected. 252: Standard error was as expected. 254: Return code was 0. 254: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/base.cpp.stdout", "None". 254: Standard output was as expected. 254: Standard error was as expected. 255: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_join. 252/397 Test #254: test_demo_tutorial_journaled_set_base ............................................. Passed 0.09 sec test 257 Start 257: test_demo_tutorial_journaled_set_example_online_search 257: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_online_search" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp.stdout" 257: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 257: Test timeout computed to be: 10000000 255: Return code was 0. 255: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp.stdout", "None". 256: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 256: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 253/397 Test #252: test_demo_tutorial_iterators_base ................................................. Passed 0.17 sec test 258 Start 258: test_demo_tutorial_journaled_set_example_online_search_assignment1_hint 258: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_online_search_assignment1_hint" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.stdout" 258: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 258: Test timeout computed to be: 10000000 255: Standard output was as expected. 255: Standard error was as expected. 254/397 Test #255: test_demo_tutorial_journaled_set_example_join ..................................... Passed 0.12 sec test 259 Start 259: test_demo_tutorial_journaled_set_solution_online_search_assignment1 259: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp.stdout" 259: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 259: Test timeout computed to be: 10000000 257: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 257: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 258: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 258: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 256: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_journal_string_basic. 259: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 259: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 256: Return code was 0. 256: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp.stdout", "None". 258: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_online_search_assignment1_hint. 256: Standard output was as expected. 256: Standard error was as expected. 255/397 Test #256: test_demo_tutorial_journaled_set_example_journal_string_basic ..................... Passed 0.10 sec test 260 Start 260: test_demo_tutorial_journaled_set_solution_online_search_assignment2 260: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp.stdout" 260: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 260: Test timeout computed to be: 10000000 258: Return code was 0. 258: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.stdout", "None". 260: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 260: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 258: Standard output was as expected. 258: Standard error was as expected. 257: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_example_online_search. 256/397 Test #258: test_demo_tutorial_journaled_set_example_online_search_assignment1_hint ........... Passed 0.10 sec test 261 Start 261: test_demo_tutorial_journaled_set_solution_online_search_assignment3 261: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp.stdout" 261: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 261: Test timeout computed to be: 10000000 261: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 259: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment1. 261: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 260: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment2. 261: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment3. 260: Return code was 0. 260: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp.stdout", "None". 260: Standard output was as expected. 260: Standard error was as expected. 257/397 Test #260: test_demo_tutorial_journaled_set_solution_online_search_assignment2 ............... Passed 0.21 sec test 262 Start 262: test_demo_tutorial_journaled_set_solution_online_search_assignment4 262: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp.stdout" 262: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 262: Test timeout computed to be: 10000000 257: Return code was 0. 257: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_online_search.cpp.stdout", "None". 257: Standard output was as expected. 257: Standard error was as expected. 258/397 Test #257: test_demo_tutorial_journaled_set_example_online_search ............................ Passed 0.33 sec test 263 Start 263: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base 263: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.stdout" 263: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 263: Test timeout computed to be: 10000000 262: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 262: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 261: Return code was 0. 261: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp.stdout", "None". 259: Return code was 0. 259: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp.stdout", "None". 263: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 263: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 261: Standard output was as expected. 261: Standard error was as expected. 259: Standard output was as expected. 259: Standard error was as expected. 259/397 Test #261: test_demo_tutorial_journaled_set_solution_online_search_assignment3 ............... Passed 0.25 sec test 264 Start 264: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 264: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.stdout" 264: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 264: Test timeout computed to be: 10000000 262: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_assignment4. 260/397 Test #259: test_demo_tutorial_journaled_set_solution_online_search_assignment1 ............... Passed 0.35 sec test 265 Start 265: test_demo_tutorial_metafunctions_assignment1_solution 265: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_metafunctions_assignment1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/assignment1_solution.cpp.stdout" 265: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 265: Test timeout computed to be: 10000000 264: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 264: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 265: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 265: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 264: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1. 263: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base. 265: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_metafunctions_assignment1_solution. 264: Return code was 0. 264: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.stdout", "None". 264: Standard output was as expected. 264: Standard error was as expected. 265: Return code was 0. 265: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/assignment1_solution.cpp.stdout", "None". 261/397 Test #264: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 ... Passed 0.15 sec test 266 Start 266: test_demo_tutorial_metafunctions_base 266: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_metafunctions_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/base.cpp.stdout" 266: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 266: Test timeout computed to be: 10000000 262: Return code was 0. 262: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp.stdout", "None". 265: Standard output was as expected. 265: Standard error was as expected. 262: Standard output was as expected. 262: Standard error was as expected. 262/397 Test #265: test_demo_tutorial_metafunctions_assignment1_solution ............................. Passed 0.16 sec test 267 Start 267: test_demo_tutorial_modifiers_UNUSED_modcomplementdna 267: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_UNUSED_modcomplementdna" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp.stdout" 267: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 267: Test timeout computed to be: 10000000 263: Return code was 0. 263: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.stdout", "None". 263/397 Test #262: test_demo_tutorial_journaled_set_solution_online_search_assignment4 ............... Passed 0.24 sec test 268 Start 268: test_demo_tutorial_modifiers_assignment1 268: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1.cpp.stdout" 268: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 268: Test timeout computed to be: 10000000 263: Standard output was as expected. 263: Standard error was as expected. 266: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 266: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 267: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 267: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 268: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 268: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 264/397 Test #263: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base ............... Passed 0.26 sec test 269 Start 269: test_demo_tutorial_modifiers_assignment1_solution 269: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_assignment1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp.stdout" 269: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 269: Test timeout computed to be: 10000000 267: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_UNUSED_modcomplementdna. 268: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_assignment1. 268: Return code was 0. 268: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1.cpp.stdout", "None". 266: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_metafunctions_base. 267: Return code was 0. 267: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp.stdout", "None". 269: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 269: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 268: Standard output was as expected. 268: Standard error was as expected. 266: Return code was 0. 266: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/base.cpp.stdout", "None". 267: Standard output was as expected. 267: Standard error was as expected. 265/397 Test #268: test_demo_tutorial_modifiers_assignment1 .......................................... Passed 0.09 sec test 270 Start 270: test_demo_tutorial_modifiers_modreverse 270: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_modreverse" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modreverse.cpp.stdout" 270: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 270: Test timeout computed to be: 10000000 266: Standard output was as expected. 266: Standard error was as expected. 266/397 Test #267: test_demo_tutorial_modifiers_UNUSED_modcomplementdna .............................. Passed 0.10 sec test 271 Start 271: test_demo_tutorial_modifiers_modview 271: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_modview" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp.stdout" 271: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 271: Test timeout computed to be: 10000000 270: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 270: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 267/397 Test #266: test_demo_tutorial_metafunctions_base ............................................. Passed 0.13 sec test 272 Start 272: test_demo_tutorial_modifiers_nested 272: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_nested" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/nested.cpp.stdout" 272: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 272: Test timeout computed to be: 10000000 269: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_assignment1_solution. 272: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 272: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 271: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 271: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 269: Return code was 0. 269: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp.stdout", "None". 270: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_modreverse. 270: Return code was 0. 270: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modreverse.cpp.stdout", "None". 269: Standard output was as expected. 269: Standard error was as expected. 268/397 Test #269: test_demo_tutorial_modifiers_assignment1_solution ................................. Passed 0.10 sec test 273 Start 273: test_demo_tutorial_multiple_sequence_alignment_assignment1 273: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_multiple_sequence_alignment_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp.stdout" 273: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 273: Test timeout computed to be: 10000000 272: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_nested. 270: Standard output was as expected. 270: Standard error was as expected. 273: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 272: Return code was 0. 272: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/nested.cpp.stdout", "None". 269/397 Test #270: test_demo_tutorial_modifiers_modreverse ........................................... Passed 0.06 sec test 274 Start 274: test_demo_tutorial_multiple_sequence_alignment_consensus 274: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_multiple_sequence_alignment_consensus" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp.stdout" 274: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 274: Test timeout computed to be: 10000000 273: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 272: Standard output was as expected. 272: Standard error was as expected. 274: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 274: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 271: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_modifiers_modview. 271: Return code was 0. 271: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp.stdout", "None". 270/397 Test #272: test_demo_tutorial_modifiers_nested ............................................... Passed 0.06 sec test 275 Start 275: test_demo_tutorial_multiple_sequence_alignment_msa 275: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_multiple_sequence_alignment_msa" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp.stdout" 275: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 275: Test timeout computed to be: 10000000 271: Standard output was as expected. 271: Standard error was as expected. 275: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 275: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 273: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_multiple_sequence_alignment_assignment1. 274: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_multiple_sequence_alignment_consensus. 271/397 Test #271: test_demo_tutorial_modifiers_modview .............................................. Passed 0.10 sec test 276 Start 276: test_demo_tutorial_pairwise_sequence_alignment_alignment_banded 276: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_banded" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.stdout" 276: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 276: Test timeout computed to be: 10000000 275: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_multiple_sequence_alignment_msa. 276: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 276: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 275: Return code was 0. 275: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp.stdout", "None". 273: Return code was 0. 275: Standard output was as expected. 275: Standard error was as expected. 273: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp.stdout", "None". 272/397 Test #275: test_demo_tutorial_multiple_sequence_alignment_msa ................................ Passed 0.07 sec test 277 Start 277: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 277: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.stdout" 277: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 277: Test timeout computed to be: 10000000 273: Standard output was as expected. 273: Standard error was as expected. 276: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_banded. 276: Return code was 0. 276: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.stdout", "None". 277: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 277: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 273/397 Test #273: test_demo_tutorial_multiple_sequence_alignment_assignment1 ........................ Passed 0.13 sec test 278 Start 278: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 278: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.stdout" 278: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 278: Test timeout computed to be: 10000000 276: Standard output was as expected. 276: Standard error was as expected. 274/397 Test #276: test_demo_tutorial_pairwise_sequence_alignment_alignment_banded ................... Passed 0.10 sec test 279 Start 279: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 279: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.stdout" 279: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 279: Test timeout computed to be: 10000000 278: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 278: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 279: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 279: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 277: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1. 277: Return code was 0. 277: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.stdout", "None". 274: Return code was 0. 274: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp.stdout", "None". 277: Standard output was as expected. 277: Standard error was as expected. 274: Standard output was as expected. 274: Standard error was as expected. 275/397 Test #277: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 ....... Passed 0.12 sec test 280 Start 280: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap 280: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.stdout" 280: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 280: Test timeout computed to be: 10000000 278: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2. 278: Return code was 0. 278: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.stdout", "None". 279: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3. 276/397 Test #274: test_demo_tutorial_multiple_sequence_alignment_consensus .......................... Passed 0.23 sec test 281 Start 281: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised 281: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.stdout" 281: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 281: Test timeout computed to be: 10000000 278: Standard output was as expected. 278: Standard error was as expected. 279: Return code was 0. 279: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.stdout", "None". 279: Standard output was as expected. 279: Standard error was as expected. 277/397 Test #278: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 ....... Passed 0.13 sec 278/397 Test #279: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 ....... Passed 0.11 sec test 282 Start 282: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_standard 282: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.stdout" 282: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 282: Test timeout computed to be: 10000000 test 283 Start 283: test_demo_tutorial_pairwise_sequence_alignment_alignment_local 283: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_local" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp.stdout" 283: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 283: Test timeout computed to be: 10000000 280: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 280: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 282: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 282: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 283: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 283: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 281: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 281: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 283: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_local. 283: Return code was 0. 283: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp.stdout", "None". 282: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard. 282: Return code was 0. 282: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.stdout", "None". 283: Standard output was as expected. 280: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap. 283: Standard error was as expected. 282: Standard output was as expected. 282: Standard error was as expected. 279/397 Test #283: test_demo_tutorial_pairwise_sequence_alignment_alignment_local .................... Passed 0.06 sec test 284 Start 284: test_demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 284: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.stdout" 284: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 284: Test timeout computed to be: 10000000 280: Return code was 0. 280: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.stdout", "None". 280/397 Test #282: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_standard .......... Passed 0.07 sec test 285 Start 285: test_demo_tutorial_pairwise_sequence_alignment_assignment5 285: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp.stdout" 285: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 285: Test timeout computed to be: 10000000 281: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised. 281: Return code was 0. 281: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.stdout", "None". 280: Standard output was as expected. 280: Standard error was as expected. 281: Standard output was as expected. 281/397 Test #280: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap ........... Passed 0.12 sec test 286 Start 286: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step1 286: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.stdout" 286: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 286: Test timeout computed to be: 10000000 281: Standard error was as expected. 284: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 284: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 282/397 Test #281: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised ....... Passed 0.11 sec test 287 Start 287: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step2 287: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.stdout" 287: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 287: Test timeout computed to be: 10000000 285: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 285: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 286: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 286: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 284: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1. 287: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 287: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 285: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5. 284: Return code was 0. 284: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.stdout", "None". 285: Return code was 0. 285: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp.stdout", "None". 284: Standard output was as expected. 284: Standard error was as expected. 283/397 Test #284: test_demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 ........ Passed 0.09 sec test 288 Start 288: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step3 288: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.stdout" 288: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 288: Test timeout computed to be: 10000000 285: Standard output was as expected. 285: Standard error was as expected. 286: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1. 284/397 Test #285: test_demo_tutorial_pairwise_sequence_alignment_assignment5 ........................ Passed 0.10 sec test 289 Start 289: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step4 289: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.stdout" 289: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 289: Test timeout computed to be: 10000000 287: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step2. 287: Return code was 0. 287: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.stdout", "None". 289: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 289: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 286: Return code was 0. 286: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.stdout", "None". 286: Standard output was as expected. 286: Standard error was as expected. 287: Standard output was as expected. 287: Standard error was as expected. 285/397 Test #287: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step2 .................. Passed 0.10 sec test 290 Start 290: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step5 290: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.stdout" 290: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 290: Test timeout computed to be: 10000000 288: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 288: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 286/397 Test #286: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step1 .................. Passed 0.12 sec test 291 Start 291: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step6 291: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step6" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.stdout" 291: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 291: Test timeout computed to be: 10000000 290: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 290: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 289: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4. 289: Return code was 0. 289: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.stdout", "None". 289: Standard output was as expected. 289: Standard error was as expected. 288: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step3. 287/397 Test #289: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step4 .................. Passed 0.08 sec test 292 Start 292: test_demo_tutorial_parsing_command_line_arguments_base 292: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_parsing_command_line_arguments_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/base.cpp.stdout" 292: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 292: Test timeout computed to be: 10000000 291: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 291: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 290: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step5. 288: Return code was 0. 288: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.stdout", "None". 290: Return code was 0. 290: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.stdout", "None". 292: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 292: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 288: Standard output was as expected. 288: Standard error was as expected. 288/397 Test #288: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step3 .................. Passed 0.13 sec test 293 Start 293: test_demo_tutorial_pattern_matching_assignment1 293: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1.cpp.stdout" 293: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 293: Test timeout computed to be: 10000000 290: Standard output was as expected. 290: Standard error was as expected. 291: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step6. 289/397 Test #290: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step5 .................. Passed 0.11 sec test 294 Start 294: test_demo_tutorial_pattern_matching_assignment1_solution 294: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1_solution.cpp.stdout" 294: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 294: Test timeout computed to be: 10000000 291: Return code was 0. 291: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.stdout", "None". 291: Standard output was as expected. 291: Standard error was as expected. 290/397 Test #291: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step6 .................. Passed 0.11 sec test 295 Start 295: test_demo_tutorial_pattern_matching_assignment2 295: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2.cpp.stdout" 295: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 295: Test timeout computed to be: 10000000 292: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_parsing_command_line_arguments_base. 292: Return code was 0. 292: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/base.cpp.stdout", "None". 292: Standard output was as expected. 292: Standard error was as expected. 291/397 Test #292: test_demo_tutorial_parsing_command_line_arguments_base ............................ Passed 0.08 sec test 296 Start 296: test_demo_tutorial_pattern_matching_assignment2_solution 296: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment2_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp.stdout" 296: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 296: Test timeout computed to be: 10000000 293: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 293: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 294: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 294: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 296: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 295: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 295: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 296: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 293: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment1. 294: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment1_solution. 294: Return code was 0. 294: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1_solution.cpp.stdout", "None". 296: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment2_solution. 293: Return code was 0. 293: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment1.cpp.stdout", "None". 293: Standard output was as expected. 293: Standard error was as expected. 296: Return code was 0. 296: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp.stdout", "None". 292/397 Test #293: test_demo_tutorial_pattern_matching_assignment1 ................................... Passed 0.12 sec test 297 Start 297: test_demo_tutorial_pattern_matching_assignment3 297: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp.stdout" 297: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 297: Test timeout computed to be: 10000000 294: Standard output was as expected. 294: Standard error was as expected. 296: Standard output was as expected. 296: Standard error was as expected. 293/397 Test #294: test_demo_tutorial_pattern_matching_assignment1_solution .......................... Passed 0.11 sec test 298 Start 298: test_demo_tutorial_pattern_matching_assignment3_solution 298: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment3_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3_solution.cpp.stdout" 298: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 298: Test timeout computed to be: 10000000 297: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 297: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 295: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment2. 294/397 Test #296: test_demo_tutorial_pattern_matching_assignment2_solution .......................... Passed 0.09 sec test 299 Start 299: test_demo_tutorial_pattern_matching_find_approx 299: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_approx" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_approx.cpp.stdout" 299: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 299: Test timeout computed to be: 10000000 295: Return code was 0. 295: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2.cpp.stdout", "None". 298: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 298: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 295: Standard output was as expected. 295: Standard error was as expected. 295/397 Test #295: test_demo_tutorial_pattern_matching_assignment2 ................................... Passed 0.13 sec test 300 Start 300: test_demo_tutorial_pattern_matching_find_exact 300: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_exact" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_exact.cpp.stdout" 300: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 300: Test timeout computed to be: 10000000 297: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment3. 297: Return code was 0. 297: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp.stdout", "None". 299: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 299: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 298: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_assignment3_solution. 298: Return code was 0. 298: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3_solution.cpp.stdout", "None". 297: Standard output was as expected. 297: Standard error was as expected. 298: Standard output was as expected. 298: Standard error was as expected. 300: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 300: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 296/397 Test #297: test_demo_tutorial_pattern_matching_assignment3 ................................... Passed 0.09 sec test 301 Start 301: test_demo_tutorial_pattern_matching_find_index 301: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_index" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index.cpp.stdout" 301: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 301: Test timeout computed to be: 10000000 299: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_approx. 299: Return code was 0. 299: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_approx.cpp.stdout", "None". 297/397 Test #298: test_demo_tutorial_pattern_matching_assignment3_solution .......................... Passed 0.09 sec test 302 Start 302: test_demo_tutorial_pattern_matching_find_index_multiple 302: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_index_multiple" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp.stdout" 302: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 302: Test timeout computed to be: 10000000 299: Standard output was as expected. 299: Standard error was as expected. 301: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 301: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 298/397 Test #299: test_demo_tutorial_pattern_matching_find_approx ................................... Passed 0.11 sec test 303 Start 303: test_demo_tutorial_q_gram_index_index_assignment5 303: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_assignment5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp.stdout" 303: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 303: Test timeout computed to be: 10000000 302: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 302: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 300: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_exact. 300: Return code was 0. 300: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_exact.cpp.stdout", "None". 303: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 303: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 300: Standard output was as expected. 300: Standard error was as expected. 301: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_index. 299/397 Test #300: test_demo_tutorial_pattern_matching_find_exact .................................... Passed 0.16 sec test 304 Start 304: test_demo_tutorial_q_gram_index_index_assignment6 304: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_assignment6" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp.stdout" 304: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 304: Test timeout computed to be: 10000000 301: Return code was 0. 301: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index.cpp.stdout", "None". 301: Standard output was as expected. 301: Standard error was as expected. 303: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_assignment5. 302: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_pattern_matching_find_index_multiple. 300/397 Test #301: test_demo_tutorial_pattern_matching_find_index .................................... Passed 0.14 sec test 305 Start 305: test_demo_tutorial_q_gram_index_index_qgram 305: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_qgram" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram.cpp.stdout" 305: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 305: Test timeout computed to be: 10000000 303: Return code was 0. 303: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp.stdout", "None". 302: Return code was 0. 302: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp.stdout", "None". 303: Standard output was as expected. 303: Standard error was as expected. 301/397 Test #303: test_demo_tutorial_q_gram_index_index_assignment5 ................................. Passed 0.13 sec test 306 Start 306: test_demo_tutorial_q_gram_index_index_qgram_hash 306: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_qgram_hash" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp.stdout" 306: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 306: Test timeout computed to be: 10000000 305: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 305: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 304: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 304: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 302: Standard output was as expected. 302: Standard error was as expected. 302/397 Test #302: test_demo_tutorial_pattern_matching_find_index_multiple ........................... Passed 0.17 sec test 307 Start 307: test_demo_tutorial_realignment_step1 307: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_realignment_step1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp.stdout" 307: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 307: Test timeout computed to be: 10000000 306: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 306: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 305: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_qgram. 306: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_qgram_hash. 305: Return code was 0. 305: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram.cpp.stdout", "None". 306: Return code was 0. 306: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp.stdout", "None". 305: Standard output was as expected. 305: Standard error was as expected. 306: Standard output was as expected. 306: Standard error was as expected. 307: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 307: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 303/397 Test #305: test_demo_tutorial_q_gram_index_index_qgram ....................................... Passed 0.10 sec test 308 Start 308: test_demo_tutorial_realignment_step2 308: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_realignment_step2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp.stdout" 308: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 308: Test timeout computed to be: 10000000 304/397 Test #306: test_demo_tutorial_q_gram_index_index_qgram_hash .................................. Passed 0.09 sec test 309 Start 309: test_demo_tutorial_sam_and_bam_io_base 309: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp.stdout" 309: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 309: Test timeout computed to be: 10000000 308: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 308: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 304: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_q_gram_index_index_assignment6. 309: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 309: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 304: Return code was 0. 304: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp.stdout", "None". 307: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_realignment_step1. 304: Standard output was as expected. 304: Standard error was as expected. 305/397 Test #304: test_demo_tutorial_q_gram_index_index_assignment6 ................................. Passed 0.18 sec test 310 Start 310: test_demo_tutorial_sam_and_bam_io_example1 310: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example1.cpp.stdout" 310: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 310: Test timeout computed to be: 10000000 309: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_base. 310: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 310: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 309: Return code was 0. 309: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp.stdout", "None". 309: Standard output was as expected. 309: Standard error was as expected. 306/397 Test #309: test_demo_tutorial_sam_and_bam_io_base ............................................ Passed 0.08 sec test 311 Start 311: test_demo_tutorial_sam_and_bam_io_example2 311: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp.stdout" 311: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 311: Test timeout computed to be: 10000000 307: Return code was 0. 307: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp.stdout", "None". 308: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_realignment_step2. 311: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 311: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 307: Standard output was as expected. 307: Standard error was as expected. 310: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example1. 307/397 Test #307: test_demo_tutorial_realignment_step1 .............................................. Passed 0.18 sec test 312 Start 312: test_demo_tutorial_sam_and_bam_io_example7 312: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example7" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp.stdout" 312: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 312: Test timeout computed to be: 10000000 312: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 312: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 310: Return code was 0. 310: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example1.cpp.stdout", "None". 311: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example2. 311: Return code was 0. 311: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp.stdout", "None". 310: Standard output was as expected. 310: Standard error was as expected. 312: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example7. 308/397 Test #310: test_demo_tutorial_sam_and_bam_io_example1 ........................................ Passed 0.09 sec test 313 Start 313: test_demo_tutorial_sam_and_bam_io_solution1 313: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp.stdout" 313: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 313: Test timeout computed to be: 10000000 311: Standard output was as expected. 311: Standard error was as expected. 313: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 313: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 309/397 Test #311: test_demo_tutorial_sam_and_bam_io_example2 ........................................ Passed 0.08 sec test 314 Start 314: test_demo_tutorial_sam_and_bam_io_solution2 314: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution2.cpp.stdout" 314: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 314: Test timeout computed to be: 10000000 312: Return code was 0. 312: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp.stdout", "None". 313: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_solution1. 313: Return code was 0. 313: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp.stdout", "None". 312: Standard output was as expected. 312: Standard error was as expected. 314: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 314: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 310/397 Test #312: test_demo_tutorial_sam_and_bam_io_example7 ........................................ Passed 0.08 sec test 315 Start 315: test_demo_tutorial_sam_and_bam_io_solution3 315: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution3.cpp.stdout" 315: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 315: Test timeout computed to be: 10000000 313: Standard output was as expected. 313: Standard error was as expected. 311/397 Test #313: test_demo_tutorial_sam_and_bam_io_solution1 ....................................... Passed 0.05 sec test 316 Start 316: test_demo_tutorial_seed_and_extend_example1 316: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp.stdout" 316: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 316: Test timeout computed to be: 10000000 315: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 315: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 316: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 316: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 314: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_solution2. 314: Return code was 0. 314: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution2.cpp.stdout", "None". 314: Standard output was as expected. 314: Standard error was as expected. 312/397 Test #314: test_demo_tutorial_sam_and_bam_io_solution2 ....................................... Passed 0.08 sec test 317 Start 317: test_demo_tutorial_seed_and_extend_example2 317: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp.stdout" 317: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 317: Test timeout computed to be: 10000000 315: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sam_and_bam_io_solution3. 315: Return code was 0. 315: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution3.cpp.stdout", "None". 316: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example1. 315: Standard output was as expected. 315: Standard error was as expected. 317: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 317: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 313/397 Test #315: test_demo_tutorial_sam_and_bam_io_solution3 ....................................... Passed 0.08 sec test 318 Start 318: test_demo_tutorial_seed_and_extend_example3 318: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example3.cpp.stdout" 318: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 318: Test timeout computed to be: 10000000 316: Return code was 0. 316: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp.stdout", "None". 316: Standard output was as expected. 316: Standard error was as expected. 317: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example2. 314/397 Test #316: test_demo_tutorial_seed_and_extend_example1 ....................................... Passed 0.08 sec test 319 Start 319: test_demo_tutorial_seed_and_extend_example4 319: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example4.cpp.stdout" 319: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 319: Test timeout computed to be: 10000000 318: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 318: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 317: Return code was 0. 317: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp.stdout", "None". 317: Standard output was as expected. 317: Standard error was as expected. 315/397 Test #317: test_demo_tutorial_seed_and_extend_example2 ....................................... Passed 0.07 sec test 320 Start 320: test_demo_tutorial_seed_and_extend_example5 320: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example5.cpp.stdout" 320: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 320: Test timeout computed to be: 10000000 320: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 320: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 318: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example3. 318: Return code was 0. 318: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example3.cpp.stdout", "None". 320: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example5. 320: Return code was 0. 320: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example5.cpp.stdout", "None". 318: Standard output was as expected. 318: Standard error was as expected. 316/397 Test #318: test_demo_tutorial_seed_and_extend_example3 ....................................... Passed 0.09 sec test 321 Start 321: test_demo_tutorial_seed_and_extend_example6 321: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example6" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp.stdout" 321: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 321: Test timeout computed to be: 10000000 319: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 319: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 320: Standard output was as expected. 320: Standard error was as expected. 317/397 Test #320: test_demo_tutorial_seed_and_extend_example5 ....................................... Passed 0.05 sec test 322 Start 322: test_demo_tutorial_seed_and_extend_example7 322: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example7" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp.stdout" 322: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 322: Test timeout computed to be: 10000000 321: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 321: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 322: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 322: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 322: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example7. 321: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example6. 322: Return code was 0. 322: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp.stdout", "None". 319: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_example4. 322: Standard output was as expected. 322: Standard error was as expected. 318/397 Test #322: test_demo_tutorial_seed_and_extend_example7 ....................................... Passed 0.06 sec test 323 Start 323: test_demo_tutorial_seed_and_extend_solution1 323: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp.stdout" 323: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 323: Test timeout computed to be: 10000000 321: Return code was 0. 321: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp.stdout", "None". 321: Standard output was as expected. 321: Standard error was as expected. 319: Return code was 0. 319: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example4.cpp.stdout", "None". 319/397 Test #321: test_demo_tutorial_seed_and_extend_example6 ....................................... Passed 0.08 sec test 324 Start 324: test_demo_tutorial_seed_and_extend_solution2 324: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp.stdout" 324: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 324: Test timeout computed to be: 10000000 319: Standard output was as expected. 319: Standard error was as expected. 320/397 Test #319: test_demo_tutorial_seed_and_extend_example4 ....................................... Passed 0.18 sec test 325 Start 325: test_demo_tutorial_seed_and_extend_solution3 325: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution3.cpp.stdout" 325: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 325: Test timeout computed to be: 10000000 324: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 324: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 325: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 325: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 323: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 323: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 308: Return code was 0. 308: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp.stdout", "None". 308: Standard output was as expected. 308: Standard error was as expected. 321/397 Test #308: test_demo_tutorial_realignment_step2 .............................................. Passed 0.52 sec test 326 Start 326: test_demo_tutorial_seed_and_extend_solution4 326: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp.stdout" 326: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 326: Test timeout computed to be: 10000000 323: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution1. 323: Return code was 0. 323: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp.stdout", "None". 324: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution2. 323: Standard output was as expected. 323: Standard error was as expected. 324: Return code was 0. 324: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp.stdout", "None". 322/397 Test #323: test_demo_tutorial_seed_and_extend_solution1 ...................................... Passed 0.10 sec test 327 Start 327: test_demo_tutorial_seed_and_extend_solution5 327: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp.stdout" 327: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 327: Test timeout computed to be: 10000000 324: Standard output was as expected. 324: Standard error was as expected. 326: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 326: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 325: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution3. 323/397 Test #324: test_demo_tutorial_seed_and_extend_solution2 ...................................... Passed 0.11 sec test 328 Start 328: test_demo_tutorial_seed_and_extend_solution6 328: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution6" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp.stdout" 328: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 328: Test timeout computed to be: 10000000 325: Return code was 0. 325: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution3.cpp.stdout", "None". 327: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 327: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 325: Standard output was as expected. 325: Standard error was as expected. 328: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 324/397 Test #325: test_demo_tutorial_seed_and_extend_solution3 ...................................... Passed 0.10 sec test 329 Start 329: test_demo_tutorial_seeds_example1 329: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seeds_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp.stdout" 329: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 329: Test timeout computed to be: 10000000 327: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution5. 327: Return code was 0. 327: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp.stdout", "None". 327: Standard output was as expected. 327: Standard error was as expected. 326: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution4. 326: Return code was 0. 326: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp.stdout", "None". 328: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 329: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 326: Standard output was as expected. 326: Standard error was as expected. 329: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 325/397 Test #327: test_demo_tutorial_seed_and_extend_solution5 ...................................... Passed 0.07 sec test 330 Start 330: test_demo_tutorial_sequence_io_base 330: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp.stdout" 330: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 330: Test timeout computed to be: 10000000 326/397 Test #326: test_demo_tutorial_seed_and_extend_solution4 ...................................... Passed 0.09 sec test 331 Start 331: test_demo_tutorial_sequence_io_example1 331: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp.stdout" 331: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 331: Test timeout computed to be: 10000000 328: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seed_and_extend_solution6. 330: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 330: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 328: Return code was 0. 328: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp.stdout", "None". 328: Standard output was as expected. 328: Standard error was as expected. 331: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 331: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 329: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_seeds_example1. 329: Return code was 0. 329: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp.stdout", "None". 330: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_base. 329: Standard output was as expected. 329: Standard error was as expected. 327/397 Test #328: test_demo_tutorial_seed_and_extend_solution6 ...................................... Passed 0.12 sec 328/397 Test #329: test_demo_tutorial_seeds_example1 ................................................. Passed 0.10 sec test 332 Start 332: test_demo_tutorial_sequence_io_solution1 332: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp.stdout" 332: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 332: Test timeout computed to be: 10000000 test 333 Start 333: test_demo_tutorial_sequence_io_solution2 333: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp.stdout" 333: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 333: Test timeout computed to be: 10000000 333: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 333: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 330: Return code was 0. 330: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/base.cpp.stdout", "None". 330: Standard output was as expected. 330: Standard error was as expected. 332: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 332: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 329/397 Test #330: test_demo_tutorial_sequence_io_base ............................................... Passed 0.10 sec test 334 Start 334: test_demo_tutorial_sequence_io_solution3 334: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp.stdout" 334: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 334: Test timeout computed to be: 10000000 331: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_example1. 334: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 334: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 331: Return code was 0. 331: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/example1.cpp.stdout", "None". 333: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution2. 331: Standard output was as expected. 331: Standard error was as expected. 330/397 Test #331: test_demo_tutorial_sequence_io_example1 ........................................... Passed 0.14 sec test 335 Start 335: test_demo_tutorial_sequence_io_solution4 335: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp.stdout" 335: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 335: Test timeout computed to be: 10000000 332: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution1. 333: Return code was 0. 333: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp.stdout", "None". 332: Return code was 0. 332: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp.stdout", "None". 333: Standard output was as expected. 333: Standard error was as expected. 332: Standard output was as expected. 332: Standard error was as expected. 331/397 Test #332: test_demo_tutorial_sequence_io_solution1 .......................................... Passed 0.12 sec test 336 Start 336: test_demo_tutorial_sequences_assignment_1_solution 336: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_1_solution.cpp.stdout" 336: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 336: Test timeout computed to be: 10000000 335: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 335: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 332/397 Test #333: test_demo_tutorial_sequence_io_solution2 .......................................... Passed 0.14 sec test 337 Start 337: test_demo_tutorial_sequences_assignment_2_solution 337: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_2_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_2_solution.cpp.stdout" 337: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 337: Test timeout computed to be: 10000000 334: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution3. 336: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 336: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 334: Return code was 0. 334: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution3.cpp.stdout", "None". 334: Standard output was as expected. 334: Standard error was as expected. 335: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequence_io_solution4. 333/397 Test #334: test_demo_tutorial_sequence_io_solution3 .......................................... Passed 0.15 sec test 338 Start 338: test_demo_tutorial_sequences_assignment_3_solution 338: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_3_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3_solution.cpp.stdout" 338: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 338: Test timeout computed to be: 10000000 337: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 337: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 336: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_1_solution. 335: Return code was 0. 335: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp.stdout", "None". 336: Return code was 0. 336: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_1_solution.cpp.stdout", "None". 336: Standard output was as expected. 336: Standard error was as expected. 335: Standard output was as expected. 335: Standard error was as expected. 334/397 Test #336: test_demo_tutorial_sequences_assignment_1_solution ................................ Passed 0.10 sec test 339 Start 339: test_demo_tutorial_sequences_assignment_4_solution 339: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_4_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp.stdout" 339: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 339: Test timeout computed to be: 10000000 338: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 338: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 339: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 335/397 Test #335: test_demo_tutorial_sequence_io_solution4 .......................................... Passed 0.16 sec test 340 Start 340: test_demo_tutorial_sequences_assignment_5_solution 340: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_5_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp.stdout" 340: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 340: Test timeout computed to be: 10000000 339: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 337: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_2_solution. 339: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_4_solution. 337: Return code was 0. 337: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_2_solution.cpp.stdout", "None". 339: Return code was 0. 339: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp.stdout", "None". 340: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 340: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 339: Standard output was as expected. 339: Standard error was as expected. 337: Standard output was as expected. 337: Standard error was as expected. 336/397 Test #339: test_demo_tutorial_sequences_assignment_4_solution ................................ Passed 0.08 sec test 341 Start 341: test_demo_tutorial_sequences_assignment_6_solution 341: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_6_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_6_solution.cpp.stdout" 341: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 341: Test timeout computed to be: 10000000 337/397 Test #337: test_demo_tutorial_sequences_assignment_2_solution ................................ Passed 0.17 sec test 342 Start 342: test_demo_tutorial_sequences_example_comparisons 342: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_comparisons" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_comparisons.cpp.stdout" 342: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 342: Test timeout computed to be: 10000000 338: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_3_solution. 338: Return code was 0. 338: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3_solution.cpp.stdout", "None". 341: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 341: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 338: Standard output was as expected. 338: Standard error was as expected. 340: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_5_solution. 340: Return code was 0. 340: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp.stdout", "None". 340: Standard output was as expected. 340: Standard error was as expected. 338/397 Test #338: test_demo_tutorial_sequences_assignment_3_solution ................................ Passed 0.18 sec test 343 Start 343: test_demo_tutorial_sequences_example_conversions_copy 343: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_conversions_copy" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_copy.cpp.stdout" 343: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 343: Test timeout computed to be: 10000000 342: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 342: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 339/397 Test #340: test_demo_tutorial_sequences_assignment_5_solution ................................ Passed 0.14 sec test 344 Start 344: test_demo_tutorial_sequences_example_conversions_move 344: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_conversions_move" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_move.cpp.stdout" 344: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 344: Test timeout computed to be: 10000000 343: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 343: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 344: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 344: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 341: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_assignment_6_solution. 344: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_conversions_move. 342: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_comparisons. 341: Return code was 0. 341: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_6_solution.cpp.stdout", "None". 341: Standard output was as expected. 341: Standard error was as expected. 344: Return code was 0. 344: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_move.cpp.stdout", "None". 343: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_conversions_copy. 343: Return code was 0. 343: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_copy.cpp.stdout", "None". 340/397 Test #341: test_demo_tutorial_sequences_assignment_6_solution ................................ Passed 0.16 sec test 345 Start 345: test_demo_tutorial_sequences_example_functionality1 345: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_functionality1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp.stdout" 345: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 345: Test timeout computed to be: 10000000 342: Return code was 0. 342: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_comparisons.cpp.stdout", "None". 344: Standard output was as expected. 344: Standard error was as expected. 343: Standard output was as expected. 343: Standard error was as expected. 345: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 345: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 342: Standard output was as expected. 342: Standard error was as expected. 341/397 Test #342: test_demo_tutorial_sequences_example_comparisons .................................. Passed 0.18 sec 342/397 Test #343: test_demo_tutorial_sequences_example_conversions_copy ............................. Passed 0.13 sec test 346 Start 346: test_demo_tutorial_sequences_example_functionality2 346: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_functionality2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp.stdout" 346: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 346: Test timeout computed to be: 10000000 test 347 Start 347: test_demo_tutorial_sequences_example_segments 347: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_segments" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_segments.cpp.stdout" 347: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 347: Test timeout computed to be: 10000000 343/397 Test #344: test_demo_tutorial_sequences_example_conversions_move ............................. Passed 0.14 sec test 348 Start 348: test_demo_tutorial_sequences_in_depth_assignment_exact_generous_solution 348: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.stdout" 348: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 348: Test timeout computed to be: 10000000 347: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 347: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 346: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 346: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 345: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_functionality1. 345: Return code was 0. 345: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp.stdout", "None". 348: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 348: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 345: Standard output was as expected. 345: Standard error was as expected. 347: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_segments. 344/397 Test #345: test_demo_tutorial_sequences_example_functionality1 ............................... Passed 0.12 sec test 349 Start 349: test_demo_tutorial_sequences_in_depth_base 349: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_in_depth_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/base.cpp.stdout" 349: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 349: Test timeout computed to be: 10000000 347: Return code was 0. 347: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_segments.cpp.stdout", "None". 347: Standard output was as expected. 347: Standard error was as expected. 345/397 Test #347: test_demo_tutorial_sequences_example_segments ..................................... Passed 0.11 sec test 350 Start 350: test_demo_tutorial_sequences_in_depth_example_overflow 350: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_in_depth_example_overflow" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/example_overflow.cpp.stdout" 350: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 350: Test timeout computed to be: 10000000 349: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 349: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 348: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution. 346: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_example_functionality2. 346: Return code was 0. 346: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp.stdout", "None". 349: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_in_depth_base. 346: Standard output was as expected. 346: Standard error was as expected. 346/397 Test #346: test_demo_tutorial_sequences_example_functionality2 ............................... Passed 0.21 sec test 351 Start 351: test_demo_tutorial_simple_rna_seq_base 351: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/base.cpp.stdout" 351: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 351: Test timeout computed to be: 10000000 349: Return code was 0. 349: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/base.cpp.stdout", "None". 349: Standard output was as expected. 349: Standard error was as expected. 350: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 350: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 347/397 Test #349: test_demo_tutorial_sequences_in_depth_base ........................................ Passed 0.14 sec test 352 Start 352: test_demo_tutorial_simple_rna_seq_genequant_assignment1 352: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp.stdout" 352: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 352: Test timeout computed to be: 10000000 351: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 351: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 352: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 352: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 350: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_sequences_in_depth_example_overflow. 352: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment1. 350: Return code was 0. 350: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/example_overflow.cpp.stdout", "None". 352: Return code was 0. 352: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp.stdout", "None". 352: Standard output was as expected. 352: Standard error was as expected. 350: Standard output was as expected. 350: Standard error was as expected. 348/397 Test #352: test_demo_tutorial_simple_rna_seq_genequant_assignment1 ........................... Passed 0.15 sec test 353 Start 353: test_demo_tutorial_simple_rna_seq_genequant_assignment2 353: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp.stdout" 353: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 353: Test timeout computed to be: 10000000 349/397 Test #350: test_demo_tutorial_sequences_in_depth_example_overflow ............................ Passed 0.26 sec test 354 Start 354: test_demo_tutorial_simple_rna_seq_genequant_assignment3 354: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp.stdout" 354: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 354: Test timeout computed to be: 10000000 351: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_base. 351: Return code was 0. 351: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/base.cpp.stdout", "None". 351: Standard output was as expected. 351: Standard error was as expected. 353: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 353: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 350/397 Test #351: test_demo_tutorial_simple_rna_seq_base ............................................ Passed 0.24 sec test 355 Start 355: test_demo_tutorial_simple_rna_seq_genequant_assignment4 355: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp.stdout" 355: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 355: Test timeout computed to be: 10000000 354: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 354: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 355: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 355: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 355: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment4. 354: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment3. 353: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment2. 354: Return code was 0. 354: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp.stdout", "None". 354: Standard output was as expected. 354: Standard error was as expected. 351/397 Test #354: test_demo_tutorial_simple_rna_seq_genequant_assignment3 ........................... Passed 0.20 sec test 356 Start 356: test_demo_tutorial_simple_rna_seq_genequant_assignment5 356: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp.stdout" 356: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 356: Test timeout computed to be: 10000000 353: Return code was 0. 353: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp.stdout", "None". 353: Standard output was as expected. 353: Standard error was as expected. 352/397 Test #353: test_demo_tutorial_simple_rna_seq_genequant_assignment2 ........................... Passed 0.25 sec test 357 Start 357: test_demo_tutorial_simple_rna_seq_genequant_solution1 357: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp.stdout" 357: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 357: Test timeout computed to be: 10000000 356: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 356: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 355: Return code was 0. 355: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp.stdout", "None". 357: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 357: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 355: Standard output was as expected. 355: Standard error was as expected. 348: Return code was 0. 348: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.stdout", "None". 348: Standard output was as expected. 348: Standard error was as expected. 353/397 Test #355: test_demo_tutorial_simple_rna_seq_genequant_assignment4 ........................... Passed 0.27 sec test 358 Start 358: test_demo_tutorial_simple_rna_seq_genequant_solution2 358: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp.stdout" 358: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 358: Test timeout computed to be: 10000000 354/397 Test #348: test_demo_tutorial_sequences_in_depth_assignment_exact_generous_solution .......... Passed 0.70 sec test 359 Start 359: test_demo_tutorial_simple_rna_seq_genequant_solution3 359: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp.stdout" 359: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 359: Test timeout computed to be: 10000000 358: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 358: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 356: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_assignment5. 357: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution1. 359: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 358: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution2. 359: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 357: Return code was 0. 357: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp.stdout", "None". 357: Standard output was as expected. 357: Standard error was as expected. 358: Return code was 0. 358: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp.stdout", "None". 358: Standard output was as expected. 358: Standard error was as expected. 355/397 Test #357: test_demo_tutorial_simple_rna_seq_genequant_solution1 ............................. Passed 0.24 sec test 360 Start 360: test_demo_tutorial_simple_rna_seq_genequant_solution4 360: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution4" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp.stdout" 360: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 360: Test timeout computed to be: 10000000 359: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution3. 356/397 Test #358: test_demo_tutorial_simple_rna_seq_genequant_solution2 ............................. Passed 0.21 sec test 361 Start 361: test_demo_tutorial_simple_rna_seq_genequant_solution5 361: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution5" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp.stdout" 361: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 361: Test timeout computed to be: 10000000 360: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 360: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 356: Return code was 0. 356: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp.stdout", "None". 361: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 361: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 356: Standard output was as expected. 356: Standard error was as expected. 360: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution4. 357/397 Test #356: test_demo_tutorial_simple_rna_seq_genequant_assignment5 ........................... Passed 0.45 sec test 362 Start 362: test_demo_tutorial_simple_rna_seq_interval_tree 362: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_interval_tree" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp.stdout" 362: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 362: Test timeout computed to be: 10000000 359: Return code was 0. 359: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp.stdout", "None". 359: Standard output was as expected. 359: Standard error was as expected. 361: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_genequant_solution5. 358/397 Test #359: test_demo_tutorial_simple_rna_seq_genequant_solution3 ............................. Passed 0.37 sec test 363 Start 363: test_demo_tutorial_string_sets_assignment_1_solution 363: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_1_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_1_solution.cpp.stdout" 363: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 363: Test timeout computed to be: 10000000 362: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 362: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 363: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 363: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 360: Return code was 0. 360: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp.stdout", "None". 360: Standard output was as expected. 360: Standard error was as expected. 359/397 Test #360: test_demo_tutorial_simple_rna_seq_genequant_solution4 ............................. Passed 0.37 sec test 364 Start 364: test_demo_tutorial_string_sets_assignment_2 364: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2.cpp.stdout" 364: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 364: Test timeout computed to be: 10000000 364: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 364: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 361: Return code was 0. 361: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp.stdout", "None". 362: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_simple_rna_seq_interval_tree. 361: Standard output was as expected. 361: Standard error was as expected. 363: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_1_solution. 360/397 Test #361: test_demo_tutorial_simple_rna_seq_genequant_solution5 ............................. Passed 0.39 sec test 365 Start 365: test_demo_tutorial_string_sets_assignment_2_solution 365: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_2_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2_solution.cpp.stdout" 365: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 365: Test timeout computed to be: 10000000 362: Return code was 0. 362: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp.stdout", "None". 362: Standard output was as expected. 362: Standard error was as expected. 363: Return code was 0. 363: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_1_solution.cpp.stdout", "None". 363: Standard output was as expected. 363: Standard error was as expected. 364: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_2. 361/397 Test #362: test_demo_tutorial_simple_rna_seq_interval_tree ................................... Passed 0.29 sec 362/397 Test #363: test_demo_tutorial_string_sets_assignment_1_solution .............................. Passed 0.25 sec test 366 Start 366: test_demo_tutorial_string_sets_assignment_3_workshop_solution 366: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_3_workshop_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp.stdout" 366: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 366: Test timeout computed to be: 10000000 test 367 Start 367: test_demo_tutorial_string_sets_assignment_4_workshop_solution 367: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_4_workshop_solution" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp.stdout" 367: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 367: Test timeout computed to be: 10000000 364: Return code was 0. 364: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2.cpp.stdout", "None". 364: Standard output was as expected. 364: Standard error was as expected. 363/397 Test #364: test_demo_tutorial_string_sets_assignment_2 ....................................... Passed 0.10 sec test 368 Start 368: test_demo_tutorial_string_sets_example_functionality 368: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_example_functionality" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality.cpp.stdout" 368: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 368: Test timeout computed to be: 10000000 366: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 366: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 368: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 365: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 365: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 368: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 367: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 367: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 368: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_example_functionality. 366: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_3_workshop_solution. 368: Return code was 0. 368: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality.cpp.stdout", "None". 368: Standard output was as expected. 368: Standard error was as expected. 364/397 Test #368: test_demo_tutorial_string_sets_example_functionality .............................. Passed 0.11 sec test 369 Start 369: test_demo_tutorial_string_sets_example_functionality_2 369: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_example_functionality_2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality_2.cpp.stdout" 369: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 369: Test timeout computed to be: 10000000 369: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 369: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 366: Return code was 0. 366: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp.stdout", "None". 366: Standard output was as expected. 366: Standard error was as expected. 365/397 Test #366: test_demo_tutorial_string_sets_assignment_3_workshop_solution ..................... Passed 0.19 sec test 370 Start 370: test_demo_tutorial_string_sets_example_iterators 370: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_example_iterators" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp.stdout" 370: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 370: Test timeout computed to be: 10000000 365: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_2_solution. 367: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_assignment_4_workshop_solution. 365: Return code was 0. 365: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2_solution.cpp.stdout", "None". 370: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 370: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 365: Standard output was as expected. 365: Standard error was as expected. 369: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_example_functionality_2. 366/397 Test #365: test_demo_tutorial_string_sets_assignment_2_solution .............................. Passed 0.28 sec test 371 Start 371: test_demo_tutorial_vcf_io_base 371: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_base" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/base.cpp.stdout" 371: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 371: Test timeout computed to be: 10000000 367: Return code was 0. 367: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp.stdout", "None". 369: Return code was 0. 369: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality_2.cpp.stdout", "None". 367: Standard output was as expected. 367: Standard error was as expected. 369: Standard output was as expected. 369: Standard error was as expected. 371: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 371: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 367/397 Test #369: test_demo_tutorial_string_sets_example_functionality_2 ............................ Passed 0.16 sec test 372 Start 372: test_demo_tutorial_vcf_io_example1 372: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_example1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp.stdout" 372: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 372: Test timeout computed to be: 10000000 368/397 Test #367: test_demo_tutorial_string_sets_assignment_4_workshop_solution ..................... Passed 0.31 sec test 373 Start 373: test_demo_tutorial_vcf_io_solution1 373: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_solution1" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp.stdout" 373: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 373: Test timeout computed to be: 10000000 370: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_string_sets_example_iterators. 371: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_base. 373: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 373: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 370: Return code was 0. 370: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp.stdout", "None". 371: Return code was 0. 371: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/base.cpp.stdout", "None". 371: Standard output was as expected. 371: Standard error was as expected. 370: Standard output was as expected. 370: Standard error was as expected. 369/397 Test #371: test_demo_tutorial_vcf_io_base .................................................... Passed 0.10 sec test 374 Start 374: test_demo_tutorial_vcf_io_solution2 374: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_solution2" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp.stdout" 374: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 374: Test timeout computed to be: 10000000 370/397 Test #370: test_demo_tutorial_string_sets_example_iterators .................................. Passed 0.17 sec test 375 Start 375: test_demo_tutorial_vcf_io_solution3 375: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py" "--binary-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_solution3" "--stdout-path" "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution3.cpp.stdout" 375: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/demos 375: Test timeout computed to be: 10000000 372: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 372: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 373: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_solution1. 374: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 374: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 373: Return code was 0. 373: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp.stdout", "None". 373: Standard output was as expected. 373: Standard error was as expected. 375: /build/reproducible-path/seqan2-2.4.0+dfsg/util/bin/demo_checker.py:47: SyntaxWarning: invalid escape sequence '\d' 375: P = (re.escape(P)).replace('\\[VAR\\]', "[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?") 371/397 Test #373: test_demo_tutorial_vcf_io_solution1 ............................................... Passed 0.10 sec test 376 Start 376: app_test_bs_tools 376: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 376: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/bs_tools 376: Test timeout computed to be: 10000000 374: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_solution2. 374: Return code was 0. 374: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution2.cpp.stdout", "None". 372: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_example1. 374: Standard output was as expected. 374: Standard error was as expected. 372/397 Test #374: test_demo_tutorial_vcf_io_solution2 ............................................... Passed 0.12 sec test 377 Start 377: app_test_dfi 377: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/dfi/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 377: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/dfi 377: Test timeout computed to be: 10000000 372: Return code was 0. 372: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp.stdout", "None". 372: Standard output was as expected. 372: Standard error was as expected. 373/397 Test #372: test_demo_tutorial_vcf_io_example1 ................................................ Passed 0.22 sec test 378 Start 378: app_test_gustaf 378: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 378: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/gustaf 378: Test timeout computed to be: 10000000 375: Running /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/demo_tutorial_vcf_io_solution3. 375: Return code was 0. 375: Loading files "/build/reproducible-path/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution3.cpp.stdout", "None". 375: Standard output was as expected. 375: Standard error was as expected. 374/397 Test #375: test_demo_tutorial_vcf_io_solution3 ............................................... Passed 0.23 sec test 379 Start 379: app_test_insegt 379: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 379: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/insegt 379: Test timeout computed to be: 10000000 379: DELETING TEMP DIR /tmp/tmp5bii1if1 379: Executing test for insegt 379: ========================= 379: 379: insegt -ro /tmp/tmp5bii1if1/default_readOutput.gff -ao /tmp/tmp5bii1if1/default_annoOutput.gff -to /tmp/tmp5bii1if1/default_tupleOutput.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/alignments.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/annotations.gff OK 379: insegt -c 2 -ro /tmp/tmp5bii1if1/threshold-count2_readOutput.gff -ao /tmp/tmp5bii1if1/threshold-count2_annoOutput.gff -to /tmp/tmp5bii1if1/threshold-count2_tupleOutput.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/alignments.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/annotations.gff OK 379: insegt -n 3 -ro /tmp/tmp5bii1if1/ntuple3_readOutput.gff -ao /tmp/tmp5bii1if1/ntuple3_annoOutput.gff -to /tmp/tmp5bii1if1/ntuple3_tupleOutput.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/alignments.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/annotations.gff OK 379: insegt -m -ro /tmp/tmp5bii1if1/max-tuple_readOutput.gff -ao /tmp/tmp5bii1if1/max-tuple_annoOutput.gff -to /tmp/tmp5bii1if1/max-tuple_tupleOutput.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/alignments.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/annotations.gff OK 379: insegt -e -ro /tmp/tmp5bii1if1/exact-ntuple_readOutput.gff -ao /tmp/tmp5bii1if1/exact-ntuple_annoOutput.gff -to /tmp/tmp5bii1if1/exact-ntuple_tupleOutput.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/alignments.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/insegt/tests/annotations.gff OK 379: ============================== 379: total tests: 5 379: failed tests: 0 379: successful tests: 5 379: ============================== 375/397 Test #379: app_test_insegt ................................................................... Passed 0.64 sec test 380 Start 380: app_test_micro_razers 380: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 380: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/micro_razers 380: Test timeout computed to be: 10000000 378: DELETING TEMP DIR /tmp/tmpyrw5ernv 378: Executing test for gustaf 378: =============================== 378: 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads_mates1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads_mates2.fa -o /tmp/tmpyrw5ernv/adeno_modified_reads_joinedMates.fa -rc OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/reads_simulated_mates1_gold.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/reads_simulated_mates2_gold.fa -o /tmp/tmpyrw5ernv/reads_simulated_joined_rc.fa -rc OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/reads_simulated_mates1_gold.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/reads_simulated_mates2_gold.fa -o /tmp/tmpyrw5ernv/reads_simulated_joined.fa OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/reads_simulated_joined_gold.fa -o /tmp/tmpyrw5ernv/reads_simulated_mates1_rc.fa -o /tmp/tmpyrw5ernv/reads_simulated_mates2_rc.fa -rc OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/reads_simulated_joined_gold.fa -o /tmp/tmpyrw5ernv/reads_simulated_mates1.fa -o /tmp/tmpyrw5ernv/reads_simulated_mates2.fa OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpyrw5ernv/st2_l100.gff -vcf /tmp/tmpyrw5ernv/st2_l100.vcf OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpyrw5ernv/st1_l30.gff -vcf /tmp/tmpyrw5ernv/st1_l30.vcf -st 1 -l 30 OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads.fa -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/stellar.gff -gff /tmp/tmpyrw5ernv/st1_l30_m.gff -vcf /tmp/tmpyrw5ernv/st1_l30_m.vcf -st 1 OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpyrw5ernv/st1_l30_ith5.gff -vcf /tmp/tmpyrw5ernv/st1_l30_ith5.vcf -st 1 -l 30 -ith 5 -bth 5 OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpyrw5ernv/st1_l30_gth3.gff -vcf /tmp/tmpyrw5ernv/st1_l30_gth3.vcf -st 1 -l 30 -gth 3 OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads_mates1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno_modified_reads_mates2.fa -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/stellar_joinedMates_l30.gff -gff /tmp/tmpyrw5ernv/pairedEnd_st1_l30.gff -vcf /tmp/tmpyrw5ernv/pairedEnd_st1_l30.vcf -st 1 -mst 1 -ll 1000 -le 100 -rc OK 378: gustaf /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/adeno.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/gustaf/tests/read_reference2.fa -gff /tmp/tmpyrw5ernv/reference2_st1_l30.gff -vcf /tmp/tmpyrw5ernv/reference2_st1_l30.vcf -st 1 -l 30 OK 378: ============================== 378: total tests: 12 378: failed tests: 0 378: successful tests: 12 378: ============================== 376/397 Test #378: app_test_gustaf ................................................................... Passed 0.97 sec test 381 Start 381: app_test_ngs_roi 381: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 381: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/ngs_roi 381: Test timeout computed to be: 10000000 381: DELETING TEMP DIR /tmp/tmpp3juq1om 381: Executing test for roi_intersect 381: ================================ 381: 381: roi_feature_projection -m projection -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_mprojection_ss.roi OK 381: roi_feature_projection -m projection -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_mprojection.roi OK 381: roi_feature_projection -m projection -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_mprojection_ss.roi OK 381: roi_feature_projection -m projection -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_mprojection.roi OK 381: roi_feature_projection -m projection -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_mprojection_ss.roi OK 381: roi_feature_projection -m projection -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_mprojection.roi OK 381: roi_feature_projection -m union -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_munion_ss.roi OK 381: roi_feature_projection -m union -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_munion.roi OK 381: roi_feature_projection -m union -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_munion_ss.roi OK 381: roi_feature_projection -m union -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_munion.roi OK 381: roi_feature_projection -m union -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_munion_ss.roi OK 381: roi_feature_projection -m union -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_munion.roi OK 381: roi_feature_projection -m difference -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_mdifference_ss.roi OK 381: roi_feature_projection -m difference -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_mdifference.roi OK 381: roi_feature_projection -m difference -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_mdifference_ss.roi OK 381: roi_feature_projection -m difference -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_mdifference.roi OK 381: roi_feature_projection -m difference -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_mdifference_ss.roi OK 381: roi_feature_projection -m difference -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_mdifference.roi OK 381: roi_feature_projection -m intersection -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_mintersection_ss.roi OK 381: roi_feature_projection -m intersection -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.bed -or /tmp/tmpp3juq1om/out_small_bed_mintersection.roi OK 381: roi_feature_projection -m intersection -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_mintersection_ss.roi OK 381: roi_feature_projection -m intersection -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gff -or /tmp/tmpp3juq1om/out_small_gff_mintersection.roi OK 381: roi_feature_projection -m intersection -ss -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_mintersection_ss.roi OK 381: roi_feature_projection -m intersection -ir /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/small.gtf -or /tmp/tmpp3juq1om/out_small_gtf_mintersection.roi OK 381: bam2roi --strand-specific -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmpp3juq1om/out_mrna_2l_ss.roi OK 381: bam2roi -if /build/reproducible-path/seqan2-2.4.0+dfsg/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmpp3juq1om/out_mrna_2l.roi OK 381: ============================== 381: total tests: 26 381: failed tests: 0 381: successful tests: 26 381: ============================== 377/397 Test #381: app_test_ngs_roi .................................................................. Passed 1.46 sec test 382 Start 382: app_test_pair_align 382: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 382: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/pair_align 382: Test timeout computed to be: 10000000 66: test_journaled_string_tree_find_horspool OK 382: Executing test for pair_align 382: ============================= 382: 382: pair_align -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.fa OK 382: pair_align -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.fa OK 382: pair_align -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.fa OK 382: pair_align -a protein -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.protein.fa OK 382: pair_align -a protein -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.protein.fa OK 382: pair_align -a protein -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.protein.fa OK 382: pair_align -m nw -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.mnw.fa OK 382: pair_align -m gotoh -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.mgotoh.fa OK 382: pair_align -m sw -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.msw.fa OK 382: pair_align -m lcs -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.mlcs.fa OK 382: pair_align -m nw -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.mnw.fa OK 382: pair_align -m gotoh -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.mgotoh.fa OK 382: pair_align -m sw -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.msw.fa OK 382: pair_align -m lcs -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.mlcs.fa OK 382: pair_align -m nw -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.mnw.fa OK 382: pair_align -m gotoh -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.mgotoh.fa OK 382: pair_align -m sw -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.msw.fa OK 382: pair_align -m lcs -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.mlcs.fa OK 382: pair_align -g -20 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.g-20.fa OK 382: pair_align -e -5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.e-5.fa OK 382: pair_align -ms 10 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.ms10.fa OK 382: pair_align -mm -8 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.mm-8.fa OK 382: pair_align -g -20 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.g-20.fa OK 382: pair_align -e -5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.e-5.fa OK 382: pair_align -ms 10 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.ms10.fa OK 382: pair_align -mm -8 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.mm-8.fa OK 382: pair_align -g -20 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.g-20.fa OK 382: pair_align -e -5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.e-5.fa OK 382: pair_align -ms 10 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.ms10.fa OK 382: pair_align -mm -8 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.mm-8.fa OK 382: pair_align -ma /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/VTML200I -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.maVTML200.fa OK 382: pair_align -ma /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/VTML200I -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.maVTML200.fa OK 382: pair_align -ma /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/VTML200I -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.maVTML200.fa OK 382: pair_align -lo 5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.lo5.fa OK 382: pair_align -hi 5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.hi5.fa OK 382: pair_align -lo 5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.lo5.fa OK 382: pair_align -hi 5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.hi5.fa OK 382: pair_align -lo 5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.lo5.fa OK 382: pair_align -hi 5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.hi5.fa OK 382: pair_align -c ffff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cffff.fa OK 382: pair_align -c tttt -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.ctttt.fa OK 382: pair_align -c ffft -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cffft.fa OK 382: pair_align -c fftf -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cfftf.fa OK 382: pair_align -c ftff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cftff.fa OK 382: pair_align -c tfff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.ctfff.fa OK 382: pair_align -c fftt -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cfftt.fa OK 382: pair_align -c fttf -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cfttf.fa OK 382: pair_align -c ttff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.cttff.fa OK 382: pair_align -c tfft -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1aab.fa -o /tmp/tmpg2t4nvrb/1aab.ctfft.fa OK 382: pair_align -c ffff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cffff.fa OK 382: pair_align -c tttt -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.ctttt.fa OK 382: pair_align -c ffft -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cffft.fa OK 382: pair_align -c fftf -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cfftf.fa OK 382: pair_align -c ftff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cftff.fa OK 382: pair_align -c tfff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.ctfff.fa OK 382: pair_align -c fftt -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cfftt.fa OK 382: pair_align -c fttf -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cfttf.fa OK 382: pair_align -c ttff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.cttff.fa OK 382: pair_align -c tfft -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/1ad2.fa -o /tmp/tmpg2t4nvrb/1ad2.ctfft.fa OK 382: pair_align -c ffff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cffff.fa OK 382: pair_align -c tttt -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.ctttt.faDELETING TEMP DIR /tmp/tmpg2t4nvrb 382: OK 382: pair_align -c ffft -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cffft.fa OK 382: pair_align -c fftf -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cfftf.fa OK 382: pair_align -c ftff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cftff.fa OK 382: pair_align -c tfff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.ctfff.fa OK 382: pair_align -c fftt -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cfftt.fa OK 382: pair_align -c fttf -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cfttf.fa OK 382: pair_align -c ttff -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.cttff.fa OK 382: pair_align -c tfft -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/2trx.fa -o /tmp/tmpg2t4nvrb/2trx.ctfft.fa OK 382: pair_align -a dna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/adeno1.fa -o /tmp/tmpg2t4nvrb/adeno1.fa OK 382: pair_align -a dna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/adeno2.fa -o /tmp/tmpg2t4nvrb/adeno2.fa OK 382: pair_align -a dna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/adeno3.fa -o /tmp/tmpg2t4nvrb/adeno3.fa OK 382: pair_align -a rna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/adeno1-rna.fa -o /tmp/tmpg2t4nvrb/adeno1-rna.fa OK 382: pair_align -a rna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/adeno2-rna.fa -o /tmp/tmpg2t4nvrb/adeno2-rna.fa OK 382: pair_align -a rna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/pair_align/tests/adeno3-rna.fa -o /tmp/tmpg2t4nvrb/adeno3-rna.fa OK 382: ============================== 382: total tests: 75 382: failed tests: 0 382: successful tests: 75 382: ============================== 378/397 Test #382: app_test_pair_align ............................................................... Passed 4.80 sec test 383 Start 383: test_test_funcs_param_chooser 383: Test command: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/test_funcs_param_chooser 383: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/param_chooser 383: Test timeout computed to be: 10000000 383: TEST SUITE test_param_chooser 383: SEQAN_ENABLE_DEBUG == 1 383: SEQAN_ENABLE_TESTING == 1 383: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 383: SEQAN_ASYNC_IO == 1 383: test_param_chooser_quality_distribution_from_prb_file OK 383: test_param_chooser_quality_distribution_from_fastq_file OK 383: test_param_chooser_parse_gapped_params OK 383: test_param_parse_shapes_from_file OK 383: ************************************** 383: Total Tests: 4 383: Skipped: 0 383: Errors: 0 383: ************************************** 379/397 Test #383: test_test_funcs_param_chooser ..................................................... Passed 0.25 sec test 384 Start 384: app_test_rabema 384: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 384: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/rabema 384: Test timeout computed to be: 10000000 380: DELETING TEMP DIR /tmp/tmpau_0v2v2 380: Executing test for micro_razers 380: =============================== 380: 380: micro_razers /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_default.razers OK 380: micro_razers -sL 14 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl14.razers OK 380: micro_razers -sL 14 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl14.sam OK 380: micro_razers -sL 14 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl14_se.razers OK 380: micro_razers -sL 15 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl15.razers OK 380: micro_razers -sL 15 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl15.sam OK 380: micro_razers -sL 15 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl15_se.razers OK 380: micro_razers -sL 16 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl16.razers OK 380: micro_razers -sL 16 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl16.sam OK 380: micro_razers -sL 16 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl16_se.razers OK 380: micro_razers -sL 17 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl17.razers OK 380: micro_razers -sL 17 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl17.sam OK 380: micro_razers -sL 17 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl17_se.razers OK 380: micro_razers -sL 18 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl18.razers OK 380: micro_razers -sL 18 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl18.sam OK 380: micro_razers -sL 18 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl18_se.razers OK 380: micro_razers -sL 19 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl19.razers OK 380: micro_razers -sL 19 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl19.sam OK 380: micro_razers -sL 19 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl19_se.razers OK 380: micro_razers -sL 20 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl20.razers OK 380: micro_razers -sL 20 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl20.sam OK 380: micro_razers -sL 20 -sE /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl20_se.razers OK 380: micro_razers -sL 18 -m 20 -pa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpau_0v2v2/se-adeno-reads36_1_sl18_m20_pa.razers OK 380: ============================== 380: total tests: 23 380: failed tests: 0 380: successful tests: 23 380: ============================== 380/397 Test #380: app_test_micro_razers ............................................................. Passed 27.08 sec test 385 Start 385: app_test_razers 385: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 385: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers 385: Test timeout computed to be: 10000000 385: Executing test for razers 385: ========================= 385: 385: razers --low-memory /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id.razers OK 385: razers --low-memory -id -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-r.razers OK 385: razers --low-memory -id -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-f.razers OK 385: razers --low-memory -id -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i90.razers OK 385: razers --low-memory -id -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i91.razers OK 385: razers --low-memory -id -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i92.razers OK 385: razers --low-memory -id -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i93.razers OK 385: razers --low-memory -id -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i94.razers OK 385: razers --low-memory -id -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i95.razers OK 385: razers --low-memory -id -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i96.razers OK 385: razers --low-memory -id -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i97.razers OK 385: razers --low-memory -id -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i98.razers OK 385: razers --low-memory -id -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i99.razers OK 385: razers --low-memory -id -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-i100.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-of0.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-of1.fa OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-of2.eland OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-of3.gff OK 385: razers --low-memory -id -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-so0.razers OK 385: razers --low-memory -id -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads36_1-id-so1.razers OK 385: razers --low-memory /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id.razers OK 385: razers --low-memory -id -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-r.razers OK 385: razers --low-memory -id -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-f.razers OK 385: razers --low-memory -id -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i90.razers OK 385: razers --low-memory -id -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i91.razers OK 385: razers --low-memory -id -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i92.razers OK 385: razers --low-memory -id -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i93.razers OK 385: razers --low-memory -id -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i94.razers OK 385: razers --low-memory -id -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i95.razers OK 385: razers --low-memory -id -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i96.razers OK 385: razers --low-memory -id -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i97.razers OK 66: test_journaled_string_tree_find_shiftand OK 385: razers --low-memory -id -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i98.razers OK 385: razers --low-memory -id -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i99.razers OK 385: razers --low-memory -id -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-i100.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-of0.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-of1.fa OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-of2.eland OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-of3.gff OK 385: razers --low-memory -id -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-so0.razers OK 385: razers --low-memory -id -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmps_rwjw99/se-adeno-reads100_1-id-so1.razers OK 385: razers --low-memory /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id.razers OK 385: razers --low-memory -id -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-r.razers OK 385: razers --low-memory -id -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-f.razers OK 385: razers --low-memory -id -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i90.razers OK 385: razers --low-memory -id -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i91.razers OK 385: razers --low-memory -id -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i92.razers OK 385: razers --low-memory -id -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i93.razers OK 385: razers --low-memory -id -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i94.razers OK 385: razers --low-memory -id -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i95.razers OK 385: razers --low-memory -id -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i96.razers OK 385: razers --low-memory -id -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i97.razers OK 385: razers --low-memory -id -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i98.razers OK 385: razers --low-memory -id -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i99.razers OK 385: razers --low-memory -id -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-i100.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-of0.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-of1.fa OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-of2.eland OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-of3.gff OK 376: DELETING TEMP DIR /tmp/tmpbva22cbl 376: Executing test for bs_tools 376: ========================= 376: 376: bisar -e3 4 -e4 5 -o /tmp/tmpbva22cbl/reads_se_N6000_0.CT_GA.verified.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.fastq 376: OK 376: bisar -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpbva22cbl/reads_se_N6000_1.CT_GA.verified.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.fastq 376: OK 376: bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpbva22cbl/reads_se_N6000_2.CT_GA.verified.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.fastq 376: OK 376: bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.2 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpbva22cbl/reads_se_N6000_3.CT_GA.verified.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.fastq 376: OK 376: bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.8 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpbva22cbl/reads_se_N6000_4.CT_GA.verified.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000.fastq 376: OK 376: bisar -e3 4 -e4 5 -o /tmp/tmpbva22cbl/reads_pe_N6000_0.CT_GA.verified.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_pe_N6000.CT_GA.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_pe_N6000.L.fastq /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_pe_N6000.R.fastq 376: OK 376: casbar -nec -mc 6 -msc 5 -mpc 0.5 -hes 0.005 -o /tmp/tmpbva22cbl/snps_se_0.vcf -b /tmp/tmpbva22cbl/meths_se_0.bed /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000_2.CT_GA.verified.pos_so.sam 376: OK 376: casbar -nec -mc 2 -msc 3 -mpc 0.5 -hes 0.005 -o /tmp/tmpbva22cbl/snps_se_1.vcf -b /tmp/tmpbva22cbl/meths_se_1.bed /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_se_N6000_2.CT_GA.verified.pos_so.sam 376: OK 376: casbar -nec -mc 6 -msc 5 -mpc 0.5 -hes 0.005 -o /tmp/tmpbva22cbl/snps_pe_0.vcf -b /tmp/tmpbva22cbl/meths_pe_0.bed /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/hg18_chr21_3000.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/bs_tools/tests/reads_pe_N6000_0.CT_GA.verified.pos_so.sam 376: OK 376: ============================== 376: total tests: 9 376: failed tests: 0 376: successful tests: 9 376: ============================== 381/397 Test #376: app_test_bs_tools ................................................................. Passed 66.14 sec test 386 Start 386: app_test_razers3 386: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 386: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 386: Test timeout computed to be: 10000000 386: Executing test for razers3 386: =========================== 386: 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-tc1.razers OK 386: razers3 -tc 1 -ng /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-ng-tc1.razers OK 386: razers3 -tc 1 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-r-tc1.razers OK 386: razers3 -tc 1 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-f-tc1.razers OK 386: razers3 -tc 1 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i90-tc1.razers OK 386: razers3 -tc 1 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i91-tc1.razers OK 386: razers3 -tc 1 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i92-tc1.razers OK 386: razers3 -tc 1 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i93-tc1.razers OK 386: razers3 -tc 1 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i94-tc1.razers OK 386: razers3 -tc 1 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i95-tc1.razers OK 386: razers3 -tc 1 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i96-tc1.razers OK 386: razers3 -tc 1 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i97-tc1.razers OK 386: razers3 -tc 1 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i98-tc1.razers OK 386: razers3 -tc 1 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i99-tc1.razers OK 386: razers3 -tc 1 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-i100-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-of0-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-of1-tc1.fa OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-of2-tc1.eland OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-of3-tc1.gff OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-of4-tc1.sam OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-of5-tc1.afg OK 386: razers3 -tc 1 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-so0-tc1.razers OK 386: razers3 -tc 1 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads36_1-so1-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-tc1.razers OK 386: razers3 -tc 1 -ng /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-ng-tc1.razers OK 386: razers3 -tc 1 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-r-tc1.razers OK 386: razers3 -tc 1 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-f-tc1.razers OK 386: razers3 -tc 1 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i90-tc1.razers OK 386: razers3 -tc 1 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i91-tc1.razers OK 386: razers3 -tc 1 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i92-tc1.razers OK 386: razers3 -tc 1 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i93-tc1.razers OK 386: razers3 -tc 1 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i94-tc1.razers OK 386: razers3 -tc 1 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i95-tc1.razers OK 386: razers3 -tc 1 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i96-tc1.razers OK 386: razers3 -tc 1 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i97-tc1.razers OK 386: razers3 -tc 1 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i98-tc1.razers OK 386: razers3 -tc 1 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i99-tc1.razers OK 386: razers3 -tc 1 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-i100-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-of0-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-of1-tc1.fa OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-of2-tc1.eland OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-of3-tc1.gff OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-of4-tc1.sam OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-of5-tc1.afg OK 386: razers3 -tc 1 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-so0-tc1.razers OK 386: razers3 -tc 1 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmprn0nb65x/se-adeno-reads100_1-so1-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-tc1.razers OK 386: razers3 -tc 1 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-r-tc1.razers OK 386: razers3 -tc 1 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-f-tc1.razers OK 386: razers3 -tc 1 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i90-tc1.razers OK 386: razers3 -tc 1 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i91-tc1.razers OK 386: razers3 -tc 1 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i92-tc1.razers OK 386: razers3 -tc 1 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i93-tc1.razers OK 386: razers3 -tc 1 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i94-tc1.razers OK 386: razers3 -tc 1 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i95-tc1.razers OK 386: razers3 -tc 1 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i96-tc1.razers OK 386: razers3 -tc 1 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i97-tc1.razers OK 386: razers3 -tc 1 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i98-tc1.razers OK 386: razers3 -tc 1 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i99-tc1.razers OK 386: razers3 -tc 1 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-i100-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-of0-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-of1-tc1.fa OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-of2-tc1.eland OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-of3-tc1.gff OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-of4-tc1.sam OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-of5-tc1.afg OK 386: razers3 -tc 1 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-so0-tc1.razers OK 386: razers3 -tc 1 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads36_2-so1-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-tc1.razers OK 386: razers3 -tc 1 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-r-tc1.razers OK 386: razers3 -tc 1 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-f-tc1.razers OK 386: razers3 -tc 1 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i90-tc1.razers OK 386: razers3 -tc 1 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i91-tc1.razers OK 386: razers3 -tc 1 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i92-tc1.razers OK 386: razers3 -tc 1 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i93-tc1.razers OK 386: razers3 -tc 1 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i94-tc1.razers OK 386: razers3 -tc 1 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i95-tc1.razers OK 386: razers3 -tc 1 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i96-tc1.razers OK 386: razers3 -tc 1 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i97-tc1.razers OK 386: razers3 -tc 1 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i98-tc1.razers OK 386: razers3 -tc 1 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i99-tc1.razers OK 386: razers3 -tc 1 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-i100-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-of0-tc1.razers OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-of1-tc1.fa OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-of2-tc1.eland OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-of3-tc1.gff OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-of4-tc1.sam OK 386: razers3 -tc 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-of5-tc1.afgDELETING TEMP DIR /tmp/tmprn0nb65x 386: OK 386: razers3 -tc 1 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-so0-tc1.razers OK 386: razers3 -tc 1 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmprn0nb65x/pe-adeno-reads100_2-so1-tc1.razers OK 386: ============================== 386: total tests: 92 386: failed tests: 0 386: successful tests: 92 386: ============================== 382/397 Test #386: app_test_razers3 .................................................................. Passed 18.24 sec test 387 Start 387: app_test_razers3_sequential 387: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/run_tests_sequential.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 387: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/razers3 387: Test timeout computed to be: 10000000 387: Executing test for razers3 387: =========================== 387: 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-tc0.razers OK 387: razers3 -tc 0 -ng /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-ng-tc0.razers OK 387: razers3 -tc 0 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-r-tc0.razers OK 387: razers3 -tc 0 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-f-tc0.razers OK 387: razers3 -tc 0 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i90-tc0.razers OK 387: razers3 -tc 0 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i91-tc0.razers OK 387: razers3 -tc 0 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i92-tc0.razers OK 387: razers3 -tc 0 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i93-tc0.razers OK 387: razers3 -tc 0 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i94-tc0.razers OK 387: razers3 -tc 0 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i95-tc0.razers OK 387: razers3 -tc 0 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i96-tc0.razers OK 387: razers3 -tc 0 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i97-tc0.razers OK 387: razers3 -tc 0 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i98-tc0.razers OK 387: razers3 -tc 0 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i99-tc0.razers OK 387: razers3 -tc 0 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-i100-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-of0-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-of1-tc0.fa OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-of2-tc0.eland OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-of3-tc0.gff OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-of4-tc0.sam OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-of5-tc0.afg OK 387: razers3 -tc 0 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-so0-tc0.razers OK 387: razers3 -tc 0 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads36_1-so1-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-tc0.razers OK 387: razers3 -tc 0 -ng /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-ng-tc0.razers OK 387: razers3 -tc 0 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-r-tc0.razers OK 387: razers3 -tc 0 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-f-tc0.razers OK 387: razers3 -tc 0 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i90-tc0.razers OK 387: razers3 -tc 0 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i91-tc0.razers OK 387: razers3 -tc 0 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i92-tc0.razers OK 387: razers3 -tc 0 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i93-tc0.razers OK 387: razers3 -tc 0 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i94-tc0.razers OK 387: razers3 -tc 0 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i95-tc0.razers OK 387: razers3 -tc 0 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i96-tc0.razers OK 66: test_journaled_string_tree_find_shiftor OK 385: razers --low-memory -id -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-so0.razersDELETING TEMP DIR /tmp/tmps_rwjw99 385: OK 385: razers --low-memory -id -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads36_2-id-so1.razers OK 385: razers --low-memory /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id.razers OK 385: razers --low-memory -id -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-r.razers OK 385: razers --low-memory -id -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-f.razers OK 385: razers --low-memory -id -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i90.razers OK 385: razers --low-memory -id -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i91.razers OK 385: razers --low-memory -id -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i92.razers OK 385: razers --low-memory -id -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i93.razers OK 385: razers --low-memory -id -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i94.razers OK 385: razers --low-memory -id -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i95.razers OK 385: razers --low-memory -id -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i96.razers OK 385: razers --low-memory -id -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i97.razers OK 385: razers --low-memory -id -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i98.razers OK 385: razers --low-memory -id -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i99.razers OK 385: razers --low-memory -id -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-i100.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-of0.razers OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-of1.fa OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-of2.eland OK 385: razers --low-memory -id /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-of3.gff OK 385: razers --low-memory -id -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-so0.razers OK 385: razers --low-memory -id -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmps_rwjw99/pe-adeno-reads100_2-id-so1.razers OK 385: ============================== 385: total tests: 84 385: failed tests: 0 385: successful tests: 84 385: ============================== 383/397 Test #385: app_test_razers ................................................................... Passed 64.45 sec test 388 Start 388: app_test_sak 388: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 388: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak 388: Test timeout computed to be: 10000000 388: DELETING TEMP DIR /tmp/tmp4zao92y8 388: Executing test for sak 388: ====================== 388: 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -o /tmp/tmp4zao92y8/adeno.all.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -s 1 -o /tmp/tmp4zao92y8/adeno.seq1.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -ss 1-2 -o /tmp/tmp4zao92y8/adeno.seq1-2.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -s 3 -o /tmp/tmp4zao92y8/adeno.seq3.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -sn gi|9626621 -o /tmp/tmp4zao92y8/adeno.sn.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -s 1 -i 5-25 -o /tmp/tmp4zao92y8/adeno.s1i5-25.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -ss 1-2 -i 5-25 -o /tmp/tmp4zao92y8/adeno.s1-2i5-25.fa 388: OK 388: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/sak /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak/tests/adeno.fa -s 1 -rc -o /tmp/tmp4zao92y8/adeno.s1rc.fa 388: OK 388: ============================== 388: total tests: 8 388: failed tests: 0 388: successful tests: 8 388: ============================== 384/397 Test #388: app_test_sak ...................................................................... Passed 0.58 sec test 389 Start 389: app_test_sam2matrix 389: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 389: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sam2matrix 389: Test timeout computed to be: 10000000 389: DELETING TEMP DIR /tmp/tmp76al5f_2 389: Executing test for sam2matrix 389: ============================= 389: 389: sam2matrix -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/tests/ecoli.sam -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/tests/ehec.sam -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sam2matrix/tests/ecoli_0.50_ehec_0.50.fq -rf ecoli.fa -rf ehec.fa -o /tmp/tmp76al5f_2/test_sam2matrix.tsv OK 389: ============================== 389: total tests: 1 389: failed tests: 0 389: successful tests: 1 389: ============================== 385/397 Test #389: app_test_sam2matrix ............................................................... Passed 0.32 sec test 390 Start 390: app_test_samcat 390: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 390: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/samcat 390: Test timeout computed to be: 10000000 390: DELETING TEMP DIR /tmp/tmps0xfy9q8 390: Executing test for samcat 390: ========================= 390: 390: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/samcat /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/ex1_a1.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/ex1_a2.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/ex1_a3.sam -o /tmp/tmps0xfy9q8/ex1_merged.sam 390: OK 390: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/samcat /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/ex1_a1.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/ex1_a2.sam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/samcat/tests/ex1_a3.sam -o /tmp/tmps0xfy9q8/ex1_merged.bam 390: OK 390: ============================== 390: total tests: 2 390: failed tests: 0 390: successful tests: 2 390: ============================== 386/397 Test #390: app_test_samcat ................................................................... Passed 0.97 sec test 391 Start 391: app_test_searchjoin 391: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 391: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/searchjoin 391: Test timeout computed to be: 10000000 387: razers3 -tc 0 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i97-tc0.razers OK 387: razers3 -tc 0 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i98-tc0.razers OK 387: razers3 -tc 0 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i99-tc0.razers OK 387: razers3 -tc 0 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-i100-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-of0-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-of1-tc0.fa OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-of2-tc0.eland OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-of3-tc0.gff OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-of4-tc0.sam OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-of5-tc0.afg OK 387: razers3 -tc 0 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-so0-tc0.razers OK 387: razers3 -tc 0 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpwt2gl7u5/se-adeno-reads100_1-so1-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-tc0.razers OK 387: razers3 -tc 0 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-r-tc0.razers OK 387: razers3 -tc 0 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-f-tc0.razers OK 387: razers3 -tc 0 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i90-tc0.razers OK 387: razers3 -tc 0 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i91-tc0.razers OK 387: razers3 -tc 0 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i92-tc0.razers OK 387: razers3 -tc 0 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i93-tc0.razers OK 387: razers3 -tc 0 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i94-tc0.razers OK 387: razers3 -tc 0 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i95-tc0.razers OK 387: razers3 -tc 0 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i96-tc0.razers OK 387: razers3 -tc 0 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i97-tc0.razers OK 387: razers3 -tc 0 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i98-tc0.razers OK 387: razers3 -tc 0 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i99-tc0.razers OK 387: razers3 -tc 0 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-i100-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-of0-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-of1-tc0.fa OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-of2-tc0.eland OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-of3-tc0.gff OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-of4-tc0.sam OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-of5-tc0.afg OK 387: razers3 -tc 0 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-so0-tc0.razers OK 387: razers3 -tc 0 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads36_2-so1-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-tc0.razers OK 387: razers3 -tc 0 -r /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-r-tc0.razers OK 387: razers3 -tc 0 -f /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-f-tc0.razers OK 387: razers3 -tc 0 -i 90 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i90-tc0.razers OK 387: razers3 -tc 0 -i 91 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i91-tc0.razers OK 387: razers3 -tc 0 -i 92 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i92-tc0.razers OK 387: razers3 -tc 0 -i 93 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i93-tc0.razers OK 387: razers3 -tc 0 -i 94 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i94-tc0.razers OK 387: razers3 -tc 0 -i 95 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i95-tc0.razers OK 387: razers3 -tc 0 -i 96 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i96-tc0.razers OK 387: razers3 -tc 0 -i 97 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i97-tc0.razers OK 387: razers3 -tc 0 -i 98 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i98-tc0.razers OK 387: razers3 -tc 0 -i 99 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i99-tc0.razers OK 387: razers3 -tc 0 -i 100 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-i100-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-of0-tc0.razers OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-of1-tc0.fa OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-of2-tc0.eland OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-of3-tc0.gff OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-of4-tc0.sam OK 387: razers3 -tc 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-of5-tc0.afgDELETING TEMP DIR /tmp/tmpwt2gl7u5 387: OK 387: razers3 -tc 0 -so 0 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-so0-tc0.razers OK 387: razers3 -tc 0 -so 1 /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-genome.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpwt2gl7u5/pe-adeno-reads100_2-so1-tc0.razers OK 387: ============================== 387: total tests: 92 387: failed tests: 0 387: successful tests: 92 387: ============================== 387/397 Test #387: app_test_razers3_sequential ....................................................... Passed 15.94 sec test 392 Start 392: app_test_seqan_tcoffee 392: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 392: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqan_tcoffee 392: Test timeout computed to be: 10000000 392: Executing test for seqan_tcoffee 392: ================================ 392: 392: seqan_tcoffee -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.fasta OK 392: seqan_tcoffee -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.fasta OK 392: seqan_tcoffee -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.fasta OK 392: seqan_tcoffee -a protein -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.protein.fasta OK 392: seqan_tcoffee -a protein -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.protein.fasta OK 392: seqan_tcoffee -a protein -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.protein.fasta OK 392: seqan_tcoffee -m global -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.mglobal.fasta OK 392: seqan_tcoffee -m local -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.mlocal.fasta OK 392: seqan_tcoffee -m overlap -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.moverlap.fasta OK 392: seqan_tcoffee -m lcs -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.mlcs.fasta OK 392: seqan_tcoffee -m global -m local -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.mglobal.mlocal.fasta OK 392: seqan_tcoffee -m local -m overlap -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.mlocal.moverlap.fasta OK 392: seqan_tcoffee -m global -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.mglobal.fasta OK 392: seqan_tcoffee -m local -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.mlocal.fasta OK 392: seqan_tcoffee -m overlap -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.moverlap.fasta OK 392: seqan_tcoffee -m lcs -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.mlcs.fasta OK 392: seqan_tcoffee -m global -m local -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.mglobal.mlocal.fasta OK 392: seqan_tcoffee -m local -m overlap -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.mlocal.moverlap.fasta OK 392: seqan_tcoffee -m global -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.mglobal.fasta OK 392: seqan_tcoffee -m local -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.mlocal.fasta OK 392: seqan_tcoffee -m overlap -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.moverlap.fasta OK 392: seqan_tcoffee -m lcs -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.mlcs.fasta OK 392: seqan_tcoffee -m global -m local -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.mglobal.mlocal.fasta OK 392: seqan_tcoffee -m local -m overlap -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.mlocal.moverlap.fasta OK 392: seqan_tcoffee -g -20 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.g-20.fasta OK 392: seqan_tcoffee -e -5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.e-5.fasta OK 392: seqan_tcoffee -ms 10 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.ms10.fasta OK 392: seqan_tcoffee -mm -8 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.mm-8.fasta OK 392: seqan_tcoffee -g -20 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.g-20.fasta OK 392: seqan_tcoffee -e -5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.e-5.fasta OK 392: seqan_tcoffee -ms 10 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.ms10.fasta OK 392: seqan_tcoffee -mm -8 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.mm-8.fasta OK 392: seqan_tcoffee -g -20 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.g-20.fasta OK 392: seqan_tcoffee -e -5 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.e-5.fasta OK 392: seqan_tcoffee -ms 10 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.ms10.fasta OK 392: seqan_tcoffee -mm -8 -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.mm-8.fasta OK 392: seqan_tcoffee -ma /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/VTML200I -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.maVTML200.fasta OK 392: seqan_tcoffee -ma /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/VTML200I -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.maVTML200.fasta OK 392: seqan_tcoffee -ma /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/VTML200I -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.maVTML200.fasta OK 392: seqan_tcoffee -u /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.newick -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.u.fasta OK 392: seqan_tcoffee -u /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.newick -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.u.fasta OK 392: seqan_tcoffee -u /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.newick -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.u.fasta OK 392: seqan_tcoffee -b nj -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.bnj.fasta OK 392: seqan_tcoffee -b min -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.bmin.fasta OK 392: seqan_tcoffee -b max -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.bmax.fasta OK 392: seqan_tcoffee -b avg -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.bavg.fasta OK 392: seqan_tcoffee -b wavg -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmp1kew0e0f/1aab.bwavg.fasta OK 392: seqan_tcoffee -b nj -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.bnj.fasta OK 392: seqan_tcoffee -b min -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.bmin.fasta OK 392: seqan_tcoffee -b max -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.bmax.fasta OK 392: seqan_tcoffee -b avg -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.bavg.fasta OK 392: seqan_tcoffee -b wavg -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmp1kew0e0f/1ad2.bwavg.fasta OK 392: seqan_tcoffee -b nj -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.bnj.fasta OK 392: seqan_tcoffee -b min -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.bmin.fastaDELETING TEMP DIR /tmp/tmp1kew0e0f 392: OK 392: seqan_tcoffee -b max -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.bmax.fasta OK 392: seqan_tcoffee -b avg -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.bavg.fasta OK 392: seqan_tcoffee -b wavg -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmp1kew0e0f/2trx.bwavg.fasta OK 392: seqan_tcoffee -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1aab.fasta OK 392: seqan_tcoffee -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/1ad2.fasta OK 392: seqan_tcoffee -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.fasta OK 392: seqan_tcoffee -a dna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/adeno2.fa -o /tmp/tmp1kew0e0f/adeno2.fasta OK 392: seqan_tcoffee -a dna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/adeno3.fa -o /tmp/tmp1kew0e0f/adeno3.fasta OK 392: seqan_tcoffee -a dna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/adeno4.fa -o /tmp/tmp1kew0e0f/adeno4.fasta OK 392: seqan_tcoffee -a rna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/adeno2-rna.fa -o /tmp/tmp1kew0e0f/adeno2-rna.fasta OK 392: seqan_tcoffee -a rna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/adeno3-rna.fa -o /tmp/tmp1kew0e0f/adeno3-rna.fasta OK 392: seqan_tcoffee -a rna -s /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/adeno4-rna.fa -o /tmp/tmp1kew0e0f/adeno4-rna.fasta OK 392: ============================== 392: total tests: 66 392: failed tests: 0 392: successful tests: 66 392: ============================== 388/397 Test #392: app_test_seqan_tcoffee ............................................................ Passed 6.80 sec test 393 Start 393: app_test_seqcons2 393: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 393: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/seqcons2 393: Test timeout computed to be: 10000000 377: DELETING TEMP DIR /tmp/tmpep8f5mfx 377: Executing test for dfi 377: ====================== 377: 377: dfi /tmp/tmpep8f5mfx/datasets/bbe.fa /tmp/tmpep8f5mfx/datasets/kjv.fa --support 0.002 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/bbe.fa /tmp/tmpep8f5mfx/datasets/kjv.fa --minmax 155 31102 --minmax 1 15551 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.002 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --minmax 10 2000 --minmax 1 1500 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.0005 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.001 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.01 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.1 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.5 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.9 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 1 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.002 --growth 1 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.002 --growth 2 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/CompWindows.fa /tmp/tmpep8f5mfx/datasets/CompNonWindows.fa --support 0.002 --growth 5 -m OK 377: dfi /tmp/tmpep8f5mfx/datasets/fasta1.fa /tmp/tmpep8f5mfx/datasets/fasta2.fa --support 1 --growth 2 OK 377: ============================== 377: total tests: 15 377: failed tests: 0 377: successful tests: 15 377: ============================== 389/397 Test #377: app_test_dfi ...................................................................... Passed 107.64 sec test 394 Start 394: app_test_sgip 394: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 394: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sgip 394: Test timeout computed to be: 10000000 393: DELETING TEMP DIR /tmp/tmp60od5t85 393: Executing test for seqcons2 393: =========================== 393: 393: seqcons2 -m overlap_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oc /tmp/tmp60od5t85/alns1.overlap_consensus.fa -oa /tmp/tmp60od5t85/alns1.overlap_consensus.sam OK 393: seqcons2 -m nop -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oc /tmp/tmp60od5t85/alns1.nop.fa -oa /tmp/tmp60od5t85/alns1.nop.sam OK 393: seqcons2 -m overlap_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.overlap_consensus.sam -oc /tmp/tmp60od5t85/alns1.overlap_consensus.fa OK 393: seqcons2 -m pos_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.pos_consensus.sam -oc /tmp/tmp60od5t85/alns1.pos_consensus.fa OK 393: seqcons2 -m contig_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.contig_consensus.sam -oc /tmp/tmp60od5t85/alns1.contig_consensus.fa OK 393: seqcons2 -m realign -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.realign.sam -oc /tmp/tmp60od5t85/alns1.realign.fa OK 393: seqcons2 -m nop -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.nop.sam -oc /tmp/tmp60od5t85/alns1.nop.fa OK 393: seqcons2 -m overlap_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.overlap_consensus.txt OK 393: seqcons2 -m pos_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.pos_consensus.txt OK 393: seqcons2 -m contig_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.contig_consensus.txt OK 393: seqcons2 -m realign -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.realign.txt OK 393: seqcons2 -m nop -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/alns1.sam -oa /tmp/tmp60od5t85/alns1.nop.txt OK 393: seqcons2 -m align_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/seqs2.fa -oa /tmp/tmp60od5t85/seqs2.align_consensus.sam -oc /tmp/tmp60od5t85/seqs2.align_consensus.fa OK 393: seqcons2 -m align_consensus -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/seqcons2/tests/seqs2.fa -oa /tmp/tmp60od5t85/seqs2.align_consensus.txt OK 393: ============================== 393: total tests: 14 393: failed tests: 0 393: successful tests: 14 393: ============================== 390/397 Test #393: app_test_seqcons2 ................................................................. Passed 3.44 sec test 395 Start 395: app_test_snp_store 395: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 395: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/snp_store 395: Test timeout computed to be: 10000000 394: DELETING TEMP DIR /tmp/tmpfkbnjycj 394: Executing test for sgip 394: ========================= 394: 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.A00 -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.B00 -v 2 -i OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.A01 -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.B01 -v 2 -i OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.A00 -c /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.B01 -v 2 -i OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/r01/iso_r01_m200.A00 -v 2 OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/srg/latin-4 -v 2 OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/srg/lattice-4 -v 2 OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/srg/paley-5 -v 2 OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/srg/sts-7 -v 2 OK 394: sgip -o /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sgip/tests/../example/srg/triang-5 -v 2 OK 394: ============================== 394: total tests: 9 394: failed tests: 0 394: successful tests: 9 394: ============================== 391/397 Test #394: app_test_sgip ..................................................................... Passed 6.64 sec test 396 Start 396: app_test_stellar 396: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 396: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/stellar 396: Test timeout computed to be: 10000000 391: DELETING TEMP DIR /tmp/tmpqrbqx1sl 391: Executing test for searchjoin 391: =========================== 391: 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_join /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/geo_database.csv 0 -i geo -t 4 -sl 5 -o /tmp/tmpqrbqx1sl/join_geo_0_5.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_join /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/geo_database.csv 1 -i geo -t 4 -sl 5 -o /tmp/tmpqrbqx1sl/join_geo_1_5.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_join /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/geo_database.csv 3 -i geo -t 4 -sl 5 -o /tmp/tmpqrbqx1sl/join_geo_3_5.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_join /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/dna_database.csv 0 -i dna -t 4 -sl 10 -o /tmp/tmpqrbqx1sl/join_dna_0_10.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_join /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/dna_database.csv 8 -i dna -t 4 -sl 10 -o /tmp/tmpqrbqx1sl/join_dna_8_10.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_join /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/dna_database.csv 16 -i dna -t 4 -sl 10 -o /tmp/tmpqrbqx1sl/join_dna_16_10.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_search /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/geo_database.csv /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/geo_queries.csv --no-wait -i geo -t 4 -sl 5 -o /tmp/tmpqrbqx1sl/search_geo_5.out OK 391: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/bin/s4_search /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/dna_database.csv /build/reproducible-path/seqan2-2.4.0+dfsg/apps/searchjoin/tests/dna_queries.csv --no-wait -i dna -t 4 -sl 10 -o /tmp/tmpqrbqx1sl/search_dna_10.out OK 391: ============================== 391: total tests: 8 391: failed tests: 0 391: successful tests: 8 391: ============================== 392/397 Test #391: app_test_searchjoin ............................................................... Passed 35.76 sec test 397 Start 397: app_test_tree_recon 397: Test command: /usr/bin/python3 "/build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/run_tests.py" "/build/reproducible-path/seqan2-2.4.0+dfsg" "/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu" 397: Working Directory: /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/tree_recon 397: Test timeout computed to be: 10000000 397: DELETING TEMP DIR /tmp/tmpufiz_o26 397: Executing test for tree_recomb 397: ============================== 397: 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.dot OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.dot OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.dot OK 397: tree_recomb -b nj -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.nj.dot OK 397: tree_recomb -b min -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.min.dot OK 397: tree_recomb -b max -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.max.dot OK 397: tree_recomb -b wavg -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.wavg.dot OK 397: tree_recomb -b nj -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.nj.dot OK 397: tree_recomb -b min -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.min.dot OK 397: tree_recomb -b max -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.max.dot OK 397: tree_recomb -b avg -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.avg.dot OK 397: tree_recomb -b wavg -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.wavg.dot OK 397: tree_recomb -b nj -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.nj.dot OK 397: tree_recomb -b min -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.min.dot OK 397: tree_recomb -b max -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.max.dot OK 397: tree_recomb -b avg -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.avg.dot OK 397: tree_recomb -b wavg -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.wavg.dot OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.dot OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example1.dist -o /tmp/tmpufiz_o26/example1.newick OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.dot OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example2.dist -o /tmp/tmpufiz_o26/example2.newick OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.dot OK 397: tree_recomb -m /build/reproducible-path/seqan2-2.4.0+dfsg/apps/tree_recon/tests/example3.dist -o /tmp/tmpufiz_o26/example3.newick OK 397: ============================== 397: total tests: 23 397: failed tests: 0 397: successful tests: 23 397: ============================== 393/397 Test #397: app_test_tree_recon ............................................................... Passed 0.79 sec 66: test_journaled_string_tree_find_myers OK 66: ************************************** 66: Total Tests: 4 66: Skipped: 0 66: Errors: 0 66: ************************************** 394/397 Test #66: test_journaled_string_tree_find ................................................... Passed 179.62 sec 395: DELETING TEMP DIR /tmp/tmprup0s7pk 395: Executing test for snp_store 395: ========================= 395: 395: snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-chr22-inf2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-reads2.gff -o /tmp/tmprup0s7pk/snps_default.vcf -id /tmp/tmprup0s7pk/indels_default.gff OK 395: snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-chr22-inf2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-reads2.sam -re -o /tmp/tmprup0s7pk/snps_realign.vcf -id /tmp/tmprup0s7pk/indels_realign.gff OK 395: snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-chr22-inf2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-reads2.sam -it 1 -re -oa -mp 1 -m maq -hq -o /tmp/tmprup0s7pk/snps_realign_m1mp1oa.vcf -id /tmp/tmprup0s7pk/indels_realign_m1mp1oa.gff OK 395: snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-chr22-inf2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-reads2.gff -it 2 -re -oa -mp 1 -hq -o /tmp/tmprup0s7pk/snps_realign_m0mp1oa.vcf -id /tmp/tmprup0s7pk/indels_realign_m0mp1oa.gff OK 395: snp_store /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-chr22-inf2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/snp_store/tests/human-reads2.sam -it 1 -ipt 0.1 -osc -re -oa -hq -o /tmp/tmprup0s7pk/snps_realign_m0mp1oa_it1ipt01.vcf -id /tmp/tmprup0s7pk/indels_realign_m0mp1oa_it1ipt01.gff OK 395: ============================== 395: total tests: 5 395: failed tests: 0 395: successful tests: 5 395: ============================== 395/397 Test #395: app_test_snp_store ................................................................ Passed 70.82 sec 384: DELETING TEMP DIR /tmp/tmpdka4vpvk 384: Executing test for rabema 384: ========================= 384: 384: rabema_prepare_sam -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-hamming-08.sam -o /tmp/tmpdka4vpvk/gold-adeno-hamming-08.by_qname.sam OK 384: rabema_prepare_sam -i /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-edit-08.sam -o /tmp/tmpdka4vpvk/gold-adeno-edit-08.by_qname.sam OK 384: rabema_build_gold_standard --distance-metric hamming -e 8 -o /tmp/tmpdka4vpvk/gold-adeno-hamming-08.gsi --reference /tmp/tmpdka4vpvk/adeno-genome.fa --in-bam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-hamming-08.by_coordinate.sam OK 384: rabema_build_gold_standard --distance-metric edit -e 8 -o /tmp/tmpdka4vpvk/gold-adeno-edit-08.gsi --reference /tmp/tmpdka4vpvk/adeno-genome.fa --in-bam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-edit-08.by_coordinate.sam OK 384: rabema_evaluate --distance-metric hamming -e 8 --reference /tmp/tmpdka4vpvk/adeno-genome.fa --in-bam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/razers2-adeno-hamming-08.sam --in-gsi /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-hamming-08.gsi OK 384: rabema_evaluate --distance-metric hamming -e 8 --reference /tmp/tmpdka4vpvk/adeno-genome.fa --in-bam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/razers2-adeno-hamming-04.sam --in-gsi /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-hamming-08.gsi OK 384: rabema_evaluate --distance-metric edit -e 8 --reference /tmp/tmpdka4vpvk/adeno-genome.fa --in-bam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/razers2-adeno-edit-08.sam --in-gsi /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-edit-08.gsi OK 384: rabema_evaluate --distance-metric edit -e 8 --reference /tmp/tmpdka4vpvk/adeno-genome.fa --in-bam /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/razers2-adeno-edit-04.sam --in-gsi /build/reproducible-path/seqan2-2.4.0+dfsg/apps/rabema/tests/gold-adeno-edit-08.gsi OK 384: ============================== 384: total tests: 8 384: failed tests: 0 384: successful tests: 8 384: ============================== 396/397 Test #384: app_test_rabema ................................................................... Passed 209.52 sec 396: Executing test for stellar 396: ========================= 396: 396: stellar -e 0.1 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/e-1.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_e-1.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_e-1.fa 396: OK 396: stellar -e 0.05 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/5e-2.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_5e-2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_5e-2.fa 396: OK 396: stellar -e 0.025 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/25e-3.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_25e-3.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_25e-3.fa 396: OK 396: stellar -e 0.075 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/75e-3.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_75e-3.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_75e-3.fa 396: OK 396: stellar -e 0.0001 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/e-4.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_e-4.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_e-4.fa 396: OK 396: stellar -e 0.05 -l 20 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/minLen20.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_5e-2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_5e-2.fa 396: OK 396: stellar -e 0.05 -l 150 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/minLen150.gff /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_5e-2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_5e-2.fa 396: OK 396: stellar -e 0.05 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpsmobs2oo/5e-2.txt /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq1_5e-2.fa /build/reproducible-path/seqan2-2.4.0+dfsg/apps/stellar/tests/512_simSeq2_5e-2.fa 396: OK 396: ============================== 396: total tests: 8 396: failed tests: 0 396: successful tests: 8 396: ============================== 397/397 Test #396: app_test_stellar .................................................................. Passed 103.09 sec 100% tests passed, 0 tests failed out of 397 Total Test time (real) = 245.80 sec make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' rm -fr -- /tmp/dh-xdg-rundir-w6zHmpG4 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars rm -fr -- debian/.debhelper/generated/seqan-apps/ debian/seqan-apps/ debian/tmp/ debian/.debhelper/generated/libseqan2-dev/ debian/libseqan2-dev/ rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_auto_install --indep -B build --destdir=/build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/ install -m0755 -d /build/reproducible-path/seqan2-2.4.0\+dfsg/debian/libseqan2-dev cd build && make -j5 install DESTDIR=/build/reproducible-path/seqan2-2.4.0\+dfsg/debian/libseqan2-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/build' /usr/bin/cmake -S/build/reproducible-path/seqan2-2.4.0+dfsg -B/build/reproducible-path/seqan2-2.4.0+dfsg/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/build' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/share/doc/seqan/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/share/doc/seqan/README.rst -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/share/doc/seqan/CHANGELOG.rst -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/share/pkgconfig/seqan-2.pc -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/share/cmake/seqan/seqan-config.cmake -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/align.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/align/align_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/align/align_cols.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/align/align_config.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/align/align_interface_wrapper.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/align/align_iterator_base.h -- Installing: 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/build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/bpseq_read_write.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/connect_read_write.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/dot_bracket_read_write.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/ebpseq_read_write.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/rna_header.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/rna_io_context.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/rna_record.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/rna_struct_file.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/stockholm_read_write.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/rna_io/vienna_read_write.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/roi_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/roi_io/read_roi.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/roi_io/roi_file.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/roi_io/roi_io_context.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/roi_io/roi_record.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/roi_io/write_roi.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_edit.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_matrix.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_matrix_data.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_matrix_dyn.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_matrix_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_simd_wrapper.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/score/score_simple.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/banded_chain_alignment.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/banded_chain_alignment_impl.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/banded_chain_alignment_profile.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/banded_chain_alignment_scout.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/banded_chain_alignment_traceback.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/basic_iter_indirect.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_combination.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_extension.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_global_chaining.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_global_chaining_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_global_chaining_gusfield.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_seed_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_seed_chained.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seeds/seeds_seed_diagonal.h -- 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/build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seq_io/fasta_fastq.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seq_io/genomic_region.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seq_io/read_embl.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seq_io/read_genbank.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/seq_io/sequence_file.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/adapt_array_pointer.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/adapt_stl_container.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/container_view.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/container_view_zip.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/iter_concat_virtual.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/segment_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/segment_infix.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/segment_prefix.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/segment_suffix.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/segment_utils.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/sequence_concatenator.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/sequence_forwards.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/sequence_interface.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/sequence_lexical.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/sequence_shortcuts.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_alloc.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_array.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_block.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_cstyle.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_packed.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_packed_old.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_concat_direct.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_dependent_generous.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_dependent_tight.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_owner.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_segment.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence/string_set_view.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence_journaled.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence_journaled/journal_entries_sorted_array.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/sequence_journaled/journal_entry.h -- Installing: 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/build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/statistics.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/statistics/statistics_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/statistics/statistics_markov_model.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_align.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_align_intervals.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_all.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_annotation.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_contig.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_intervaltree.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_io_gff.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_io_sam.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_io_ucsc.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_library.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_matepair.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/store/store_read.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/adapt_ios.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/buffered_stream.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/file_stream.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/formatted_file.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/guess_format.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iostream_bgzf.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iostream_bzip2.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iostream_bzip2_impl.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iostream_zip.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iostream_zip_impl.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iostream_zutil.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/iter_stream.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/lexical_cast.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/stream_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/stream_compressor.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/tokenization.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/stream/virtual_stream.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/file_async.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/file_directory.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/file_forwards.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/file_sync.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/system_base.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/system_event_win.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/system/system_forwards.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/tabix_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/tabix_io/tabix_index_tbi.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/translation.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/translation/translation.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/translation/translation_tables.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/ucsc_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/ucsc_io/ucsc_file.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/ucsc_io/ucsc_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/ucsc_io/ucsc_record.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/read_vcf.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/vcf_file.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/vcf_header.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/vcf_header_record.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/vcf_io_context.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/vcf_record.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/vcf_io/write_vcf.h -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/include/seqan/version.h make[2]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/build' rm -Rf /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev/usr/share/doc/seqan make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_auto_install -Nlibseqan2-dev install -m0755 -d /build/reproducible-path/seqan2-2.4.0\+dfsg/debian/tmp cd obj-i686-linux-gnu && make -j5 install DESTDIR=/build/reproducible-path/seqan2-2.4.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan2-2.4.0+dfsg -B/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/alf -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/alf/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/alf/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/alf/example/small.fasta -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/bisar -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/casbar -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/four2three -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/bs_tools/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/bs_tools/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/dfi -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/dfi/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/dfi/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/dfi/example/fasta1.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/dfi/example/fasta2.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/fx_bam_coverage -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/fx_tools/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/fx_tools/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/gustaf -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/gustaf_mate_joining -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/gustaf/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/gustaf/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/gustaf/example/adeno.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/gustaf/example/adeno_modified.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/gustaf/example/adeno_modified_reads.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/gustaf/example/stellar.gff -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/insegt -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/insegt/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/insegt/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/insegt/example/annoOutput.gff -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/insegt/example/annotations.gff -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/insegt/example/readOutput.gff -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/insegt/example/tupleOutput.gff -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_frag_sequencing -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_genome -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_materializer -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_methylation -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_simulator -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_splicing -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/mason_variator -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_frag_sequencing -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_genome -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_materializer -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_methylation -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_simulator -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_splicing -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/README.mason_variator -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/mason2/example/adeno_virus.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/micro_razers -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/micro_razers/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/micro_razers/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/micro_razers/example/genome.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/micro_razers/example/reads.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/micro_razers/example/reads.fa.result -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/bam2roi -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/roi_feature_projection -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/roi_plot_thumbnails -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/bed_sort.sh -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/gff_sort.sh -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/roi_sort.sh -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/roi_plot_9.sh -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/plot.awk -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/ps2pswLinks.gawk -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/example/dmel.bed -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/example/dmel.gtf -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/example/example.bam -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/R/ngsroi_0.1.tar.gz -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/ngs_roi/R/ngsroi_0.1.zip -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/pair_align -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/pair_align/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/pair_align/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/param_chooser -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/param_chooser/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/param_chooser/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rabema_prepare_sam -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rabema_build_gold_standard -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rabema_evaluate -- Up-to-date: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rabema_prepare_sam -- Up-to-date: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rabema_build_gold_standard -- Up-to-date: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rabema_evaluate -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/rabema/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/rabema/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/razers -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers/example/genome.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers/example/reads.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers/example/reads2.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/razers3 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers3/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers3/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers3/example/genome.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers3/example/reads.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/razers3/example/reads2.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/rep_sep -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/rep_sep/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/rep_sep/README Change Dir: '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile sak_doc gmake[2]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /usr/bin/cmake -S/build/reproducible-path/seqan2-2.4.0+dfsg -B/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc gmake[3]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan2-2.4.0+dfsg -B/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles 1 /usr/bin/gmake -f CMakeFiles/Makefile2 apps/sak/CMakeFiles/sak_doc.dir/all gmake[4]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/gmake -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/gmake -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Built target seqan_library /usr/bin/gmake -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/gmake -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' gmake[5]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Built target sak /usr/bin/gmake -f apps/sak/CMakeFiles/sak_doc.dir/build.make apps/sak/CMakeFiles/sak_doc.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan2-2.4.0+dfsg /build/reproducible-path/seqan2-2.4.0+dfsg/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/gmake -f apps/sak/CMakeFiles/sak_doc.dir/build.make apps/sak/CMakeFiles/sak_doc.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [ 0%] Generating README.sak.txt cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak && ../../bin/sak --export-help=txt > README.sak.txt [100%] Generating sak.1 cd /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/apps/sak && ../../bin/sak --export-help=man > sak.1 gmake[5]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' [100%] Built target sak_doc gmake[4]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' gmake[2]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/sak -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sak/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sak/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sak/README.sak.txt -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/man/man1/sak.1 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/sam2matrix -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sam2matrix/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sam2matrix/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/samcat -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/samcat/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/samcat/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/s4_search -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/s4_join -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/searchjoin/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/searchjoin/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/seqan_tcoffee -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/seqan_tcoffee/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/seqan_tcoffee/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/seqan_tcoffee/example/seq.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/seqcons2 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/seqcons2/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/seqcons2/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/sgip -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/iso_m2D_m196.A01 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/iso_r01_m200.A00 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/iso_r01_m200.A01 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/iso_r01_m200.B00 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/iso_r01_m200.B01 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/latin-4 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/lattice-4 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/sgip/example/sts-7 -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/snp_store -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/snp_store/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/snp_store/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/snp_store/example/exampleGenome.fa -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/snp_store/example/exampleReads.gff -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/stellar -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/stellar/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/stellar/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/stellar/example/NC_001474.fasta -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/stellar/example/NC_001477.fasta -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/stellar/example/reads.fasta -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/bin/tree_recon -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/tree_recon/LICENSE -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/tree_recon/README -- Installing: /build/reproducible-path/seqan2-2.4.0+dfsg/debian/tmp/usr/share/doc/tree_recon/example/example.dist make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg/obj-i686-linux-gnu' rm -f debian/libseqan2-dev.debhelper.log debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_install --arch install -m0755 -d debian/seqan-apps/usr/lib/seqan cp --reflink=auto -a debian/tmp/usr/bin debian/seqan-apps/usr/lib/seqan/ install -m0755 -d debian/seqan-apps/usr/share/doc/seqan-apps cp --reflink=auto -a debian/tmp/usr/share/doc/alf debian/tmp/usr/share/doc/bs_tools debian/tmp/usr/share/doc/dfi debian/tmp/usr/share/doc/fx_tools debian/tmp/usr/share/doc/gustaf debian/tmp/usr/share/doc/insegt debian/tmp/usr/share/doc/mason2 debian/tmp/usr/share/doc/micro_razers debian/tmp/usr/share/doc/ngs_roi debian/tmp/usr/share/doc/pair_align debian/tmp/usr/share/doc/param_chooser debian/tmp/usr/share/doc/rabema debian/tmp/usr/share/doc/razers debian/tmp/usr/share/doc/razers3 debian/tmp/usr/share/doc/rep_sep debian/tmp/usr/share/doc/sak debian/tmp/usr/share/doc/sam2matrix debian/tmp/usr/share/doc/samcat debian/tmp/usr/share/doc/searchjoin debian/tmp/usr/share/doc/seqan_tcoffee debian/tmp/usr/share/doc/seqcons2 debian/tmp/usr/share/doc/sgip debian/tmp/usr/share/doc/snp_store debian/tmp/usr/share/doc/stellar debian/tmp/usr/share/doc/tree_recon debian/seqan-apps/usr/share/doc/seqan-apps/ # Delete additional LICENSE files find /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps -type f -name LICENSE -delete || /bin/true find /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/lib/seqan/bin -type f \ -name "*.sh" | xargs chmod a+x make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_install --indep # Delete additional LICENSE and compiled Python files if [ -d /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev ] ; then \ find /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev -type f -name LICENSE -delete ; \ find /build/reproducible-path/seqan2-2.4.0+dfsg/debian/libseqan2-dev -type f -name "*.pyc" -delete ; \ fi make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_installdocs install -p -m0644 debian/README.Debian debian/seqan-apps/usr/share/doc/seqan-apps/README.Debian install -p -m0644 debian/copyright debian/seqan-apps/usr/share/doc/seqan-apps/copyright install -m0755 -d debian/libseqan2-dev/usr/share/doc/libseqan2-dev install -m0755 -d debian/libseqan2-dev/usr/share/doc/libseqan2-dev cp --reflink=auto -a ./README.rst debian/libseqan2-dev/usr/share/doc/libseqan2-dev chmod -R u\+rw,go=rX debian/libseqan2-dev/usr/share/doc install -p -m0644 debian/copyright debian/libseqan2-dev/usr/share/doc/libseqan2-dev/copyright dh_installchangelogs install -m0755 -d debian/seqan-apps/usr/share/doc/seqan-apps install -p -m0644 debian/.debhelper/generated/seqan-apps/dh_installchangelogs.dch.trimmed debian/seqan-apps/usr/share/doc/seqan-apps/changelog.Debian install -p -m0644 ./CHANGELOG.rst debian/seqan-apps/usr/share/doc/seqan-apps/changelog install -m0755 -d debian/libseqan2-dev/usr/share/doc/libseqan2-dev install -p -m0644 debian/.debhelper/generated/libseqan2-dev/dh_installchangelogs.dch.trimmed debian/libseqan2-dev/usr/share/doc/libseqan2-dev/changelog.Debian install -p -m0644 ./CHANGELOG.rst debian/libseqan2-dev/usr/share/doc/libseqan2-dev/changelog rm -f debian/libseqan2-dev.debhelper.log debian/rules override_dh_installman-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_link --arch install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/yara_mapper ln -s ../lib/seqan/bin/yara_mapper debian/seqan-apps/usr/bin/yara_mapper install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/yara_indexer ln -s ../lib/seqan/bin/yara_indexer debian/seqan-apps/usr/bin/yara_indexer install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/tree_recon ln -s ../lib/seqan/bin/tree_recon debian/seqan-apps/usr/bin/tree_recon install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/stellar ln -s ../lib/seqan/bin/stellar debian/seqan-apps/usr/bin/stellar install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/splazers ln -s ../lib/seqan/bin/splazers debian/seqan-apps/usr/bin/splazers install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/snp_store ln -s ../lib/seqan/bin/snp_store debian/seqan-apps/usr/bin/snp_store install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/seqan_tcoffee ln -s ../lib/seqan/bin/seqan_tcoffee debian/seqan-apps/usr/bin/seqan_tcoffee install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/sak ln -s ../lib/seqan/bin/sak debian/seqan-apps/usr/bin/sak install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/razers3 ln -s ../lib/seqan/bin/razers3 debian/seqan-apps/usr/bin/razers3 install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/razers ln -s ../lib/seqan/bin/razers debian/seqan-apps/usr/bin/razers install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/rabema_prepare_sam ln -s ../lib/seqan/bin/rabema_prepare_sam debian/seqan-apps/usr/bin/rabema_prepare_sam install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/rabema_evaluate ln -s ../lib/seqan/bin/rabema_evaluate debian/seqan-apps/usr/bin/rabema_evaluate install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/rabema_build_gold_standard ln -s ../lib/seqan/bin/rabema_build_gold_standard debian/seqan-apps/usr/bin/rabema_build_gold_standard install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/pair_align ln -s ../lib/seqan/bin/pair_align debian/seqan-apps/usr/bin/pair_align install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/micro_razers ln -s ../lib/seqan/bin/micro_razers debian/seqan-apps/usr/bin/micro_razers install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/mason_methylation ln -s ../lib/seqan/bin/mason_methylation debian/seqan-apps/usr/bin/mason_methylation install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/mason_materializer ln -s ../lib/seqan/bin/mason_materializer debian/seqan-apps/usr/bin/mason_materializer install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/mason_genome ln -s ../lib/seqan/bin/mason_genome debian/seqan-apps/usr/bin/mason_genome install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/mason_frag_sequencing ln -s ../lib/seqan/bin/mason_frag_sequencing debian/seqan-apps/usr/bin/mason_frag_sequencing install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/insegt ln -s ../lib/seqan/bin/insegt debian/seqan-apps/usr/bin/insegt install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/gustaf ln -s ../lib/seqan/bin/gustaf debian/seqan-apps/usr/bin/gustaf install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/alf ln -s ../lib/seqan/bin/alf debian/seqan-apps/usr/bin/alf if [ -d /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/bin ] ; then \ find /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/bin -type l -xtype l -delete ; \ fi /build/reproducible-path/seqan2-2.4.0+dfsg/debian/generate_manpages dh_installman --arch install -m0755 -d debian/seqan-apps/usr/share/man/man1/ install -p -m0644 debian/tmp/usr/share/man/man1/sak.1 debian/seqan-apps/usr/share/man/man1/sak.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/alf.1 debian/seqan-apps/usr/share/man/man1/gustaf.1 debian/seqan-apps/usr/share/man/man1/insegt.1 debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/mason_genome.1 debian/seqan-apps/usr/share/man/man1/mason_materializer.1 debian/seqan-apps/usr/share/man/man1/mason_methylation.1 debian/seqan-apps/usr/share/man/man1/micro_razers.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/snp_store.1 debian/seqan-apps/usr/share/man/man1/stellar.1 debian/seqan-apps/usr/share/man/man1/tree_recon.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/pair_align.1 debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/razers.1 debian/seqan-apps/usr/share/man/man1/razers3.1 debian/seqan-apps/usr/share/man/man1/sak.1 debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 mv debian/seqan-apps/usr/share/man/man1/snp_store.1.dh-new debian/seqan-apps/usr/share/man/man1/snp_store.1 mv debian/seqan-apps/usr/share/man/man1/stellar.1.dh-new debian/seqan-apps/usr/share/man/man1/stellar.1 mv debian/seqan-apps/usr/share/man/man1/tree_recon.1.dh-new debian/seqan-apps/usr/share/man/man1/tree_recon.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/snp_store.1 debian/seqan-apps/usr/share/man/man1/stellar.1 debian/seqan-apps/usr/share/man/man1/tree_recon.1 mv debian/seqan-apps/usr/share/man/man1/alf.1.dh-new debian/seqan-apps/usr/share/man/man1/alf.1 mv debian/seqan-apps/usr/share/man/man1/gustaf.1.dh-new debian/seqan-apps/usr/share/man/man1/gustaf.1 mv debian/seqan-apps/usr/share/man/man1/insegt.1.dh-new debian/seqan-apps/usr/share/man/man1/insegt.1 mv debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/alf.1 debian/seqan-apps/usr/share/man/man1/gustaf.1 debian/seqan-apps/usr/share/man/man1/insegt.1 debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1 mv debian/seqan-apps/usr/share/man/man1/mason_genome.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_genome.1 mv debian/seqan-apps/usr/share/man/man1/mason_materializer.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_materializer.1 mv debian/seqan-apps/usr/share/man/man1/mason_methylation.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_methylation.1 mv debian/seqan-apps/usr/share/man/man1/micro_razers.1.dh-new debian/seqan-apps/usr/share/man/man1/micro_razers.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/mason_genome.1 debian/seqan-apps/usr/share/man/man1/mason_materializer.1 debian/seqan-apps/usr/share/man/man1/mason_methylation.1 debian/seqan-apps/usr/share/man/man1/micro_razers.1 mv debian/seqan-apps/usr/share/man/man1/razers.1.dh-new debian/seqan-apps/usr/share/man/man1/razers.1 mv debian/seqan-apps/usr/share/man/man1/razers3.1.dh-new debian/seqan-apps/usr/share/man/man1/razers3.1 mv debian/seqan-apps/usr/share/man/man1/sak.1.dh-new debian/seqan-apps/usr/share/man/man1/sak.1 mv debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1.dh-new debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/razers.1 debian/seqan-apps/usr/share/man/man1/razers3.1 debian/seqan-apps/usr/share/man/man1/sak.1 debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 mv debian/seqan-apps/usr/share/man/man1/pair_align.1.dh-new debian/seqan-apps/usr/share/man/man1/pair_align.1 mv debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1.dh-new debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 mv debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1.dh-new debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 mv debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1.dh-new debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/pair_align.1 debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_installman -Nseqan-apps dh_perl rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_link-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_link --arch rm -f debian/seqan-apps/usr/bin/alf ln -s ../lib/seqan/bin/alf debian/seqan-apps/usr/bin/alf rm -f debian/seqan-apps/usr/bin/mason_genome ln -s ../lib/seqan/bin/mason_genome debian/seqan-apps/usr/bin/mason_genome rm -f debian/seqan-apps/usr/bin/insegt ln -s ../lib/seqan/bin/insegt debian/seqan-apps/usr/bin/insegt rm -f debian/seqan-apps/usr/bin/gustaf ln -s ../lib/seqan/bin/gustaf debian/seqan-apps/usr/bin/gustaf rm -f debian/seqan-apps/usr/bin/mason_frag_sequencing ln -s ../lib/seqan/bin/mason_frag_sequencing debian/seqan-apps/usr/bin/mason_frag_sequencing rm -f debian/seqan-apps/usr/bin/snp_store ln -s ../lib/seqan/bin/snp_store debian/seqan-apps/usr/bin/snp_store rm -f debian/seqan-apps/usr/bin/mason_methylation ln -s ../lib/seqan/bin/mason_methylation debian/seqan-apps/usr/bin/mason_methylation rm -f debian/seqan-apps/usr/bin/razers ln -s ../lib/seqan/bin/razers debian/seqan-apps/usr/bin/razers rm -f debian/seqan-apps/usr/bin/seqan_tcoffee ln -s ../lib/seqan/bin/seqan_tcoffee debian/seqan-apps/usr/bin/seqan_tcoffee rm -f debian/seqan-apps/usr/bin/rabema_prepare_sam ln -s ../lib/seqan/bin/rabema_prepare_sam debian/seqan-apps/usr/bin/rabema_prepare_sam rm -f debian/seqan-apps/usr/bin/pair_align ln -s ../lib/seqan/bin/pair_align debian/seqan-apps/usr/bin/pair_align rm -f debian/seqan-apps/usr/bin/micro_razers ln -s ../lib/seqan/bin/micro_razers debian/seqan-apps/usr/bin/micro_razers rm -f debian/seqan-apps/usr/bin/rabema_evaluate ln -s ../lib/seqan/bin/rabema_evaluate debian/seqan-apps/usr/bin/rabema_evaluate rm -f debian/seqan-apps/usr/bin/rabema_build_gold_standard ln -s ../lib/seqan/bin/rabema_build_gold_standard debian/seqan-apps/usr/bin/rabema_build_gold_standard rm -f debian/seqan-apps/usr/bin/razers3 ln -s ../lib/seqan/bin/razers3 debian/seqan-apps/usr/bin/razers3 rm -f debian/seqan-apps/usr/bin/sak ln -s ../lib/seqan/bin/sak debian/seqan-apps/usr/bin/sak rm -f debian/seqan-apps/usr/bin/stellar ln -s ../lib/seqan/bin/stellar debian/seqan-apps/usr/bin/stellar rm -f debian/seqan-apps/usr/bin/mason_materializer ln -s ../lib/seqan/bin/mason_materializer debian/seqan-apps/usr/bin/mason_materializer rm -f debian/seqan-apps/usr/bin/tree_recon ln -s ../lib/seqan/bin/tree_recon debian/seqan-apps/usr/bin/tree_recon install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/yara_mapper ln -s ../lib/seqan/bin/yara_mapper debian/seqan-apps/usr/bin/yara_mapper install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/yara_indexer ln -s ../lib/seqan/bin/yara_indexer debian/seqan-apps/usr/bin/yara_indexer rm -f debian/seqan-apps/usr/bin/tree_recon ln -s ../lib/seqan/bin/tree_recon debian/seqan-apps/usr/bin/tree_recon rm -f debian/seqan-apps/usr/bin/stellar ln -s ../lib/seqan/bin/stellar debian/seqan-apps/usr/bin/stellar install -m0755 -d debian/seqan-apps/usr/bin rm -f debian/seqan-apps/usr/bin/splazers ln -s ../lib/seqan/bin/splazers debian/seqan-apps/usr/bin/splazers rm -f debian/seqan-apps/usr/bin/snp_store ln -s ../lib/seqan/bin/snp_store debian/seqan-apps/usr/bin/snp_store rm -f debian/seqan-apps/usr/bin/seqan_tcoffee ln -s ../lib/seqan/bin/seqan_tcoffee debian/seqan-apps/usr/bin/seqan_tcoffee rm -f debian/seqan-apps/usr/bin/sak ln -s ../lib/seqan/bin/sak debian/seqan-apps/usr/bin/sak rm -f debian/seqan-apps/usr/bin/razers3 ln -s ../lib/seqan/bin/razers3 debian/seqan-apps/usr/bin/razers3 rm -f debian/seqan-apps/usr/bin/razers ln -s ../lib/seqan/bin/razers debian/seqan-apps/usr/bin/razers rm -f debian/seqan-apps/usr/bin/rabema_prepare_sam ln -s ../lib/seqan/bin/rabema_prepare_sam debian/seqan-apps/usr/bin/rabema_prepare_sam rm -f debian/seqan-apps/usr/bin/rabema_evaluate ln -s ../lib/seqan/bin/rabema_evaluate debian/seqan-apps/usr/bin/rabema_evaluate rm -f debian/seqan-apps/usr/bin/rabema_build_gold_standard ln -s ../lib/seqan/bin/rabema_build_gold_standard debian/seqan-apps/usr/bin/rabema_build_gold_standard rm -f debian/seqan-apps/usr/bin/pair_align ln -s ../lib/seqan/bin/pair_align debian/seqan-apps/usr/bin/pair_align rm -f debian/seqan-apps/usr/bin/micro_razers ln -s ../lib/seqan/bin/micro_razers debian/seqan-apps/usr/bin/micro_razers rm -f debian/seqan-apps/usr/bin/mason_methylation ln -s ../lib/seqan/bin/mason_methylation debian/seqan-apps/usr/bin/mason_methylation rm -f debian/seqan-apps/usr/bin/mason_materializer ln -s ../lib/seqan/bin/mason_materializer debian/seqan-apps/usr/bin/mason_materializer rm -f debian/seqan-apps/usr/bin/mason_genome ln -s ../lib/seqan/bin/mason_genome debian/seqan-apps/usr/bin/mason_genome rm -f debian/seqan-apps/usr/bin/mason_frag_sequencing ln -s ../lib/seqan/bin/mason_frag_sequencing debian/seqan-apps/usr/bin/mason_frag_sequencing rm -f debian/seqan-apps/usr/bin/insegt ln -s ../lib/seqan/bin/insegt debian/seqan-apps/usr/bin/insegt rm -f debian/seqan-apps/usr/bin/gustaf ln -s ../lib/seqan/bin/gustaf debian/seqan-apps/usr/bin/gustaf rm -f debian/seqan-apps/usr/bin/alf ln -s ../lib/seqan/bin/alf debian/seqan-apps/usr/bin/alf # Some binaries (eg. splazer) are not built in 32-bit architectures so # remove their (broken) symlinks. if [ -d /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/bin ] ; then \ find /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/bin -type l -xtype l -delete ; \ fi make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_link -Nseqan-apps dh_strip_nondeterminism Using 1705323437 as canonical time Normalizing debian/seqan-apps/usr/share/doc/seqan-apps/ngs_roi/R/ngsroi_0.1.tar.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/seqan-apps/usr/share/doc/seqan-apps/ngs_roi/R/ngsroi_0.1.zip using File::StripNondeterminism::handlers::zip dh_compress cd debian/libseqan2-dev cd debian/seqan-apps chmod a-x usr/share/doc/seqan-apps/alf/README usr/share/doc/seqan-apps/changelog usr/share/doc/seqan-apps/changelog.Debian usr/share/doc/seqan-apps/dfi/README usr/share/doc/seqan-apps/gustaf/README usr/share/doc/seqan-apps/gustaf/example/adeno.fa usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa usr/share/doc/seqan-apps/insegt/README usr/share/doc/seqan-apps/mason2/README.mason_methylation usr/share/doc/seqan-apps/mason2/README.mason_simulator usr/share/doc/seqan-apps/mason2/README.mason_variator usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa usr/share/doc/seqan-apps/micro_razers/README usr/share/doc/seqan-apps/ngs_roi/README usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf usr/share/doc/seqan-apps/ngs_roi/example/example.bam usr/share/doc/seqan-apps/rabema/README usr/share/doc/seqan-apps/razers/README usr/share/doc/seqan-apps/razers3/README usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01 usr/share/doc/seqan-apps/snp_store/README usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa usr/share/doc/seqan-apps/stellar/README usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta usr/share/man/man1/alf.1 usr/share/man/man1/gustaf.1 usr/share/man/man1/insegt.1 usr/share/man/man1/mason_frag_sequencing.1 usr/share/man/man1/mason_genome.1 usr/share/man/man1/mason_materializer.1 usr/share/man/man1/mason_methylation.1 usr/share/man/man1/micro_razers.1 usr/share/man/man1/pair_align.1 usr/share/man/man1/rabema_build_gold_standard.1 usr/share/man/man1/rabema_evaluate.1 usr/share/man/man1/rabema_prepare_sam.1 usr/share/man/man1/razers.1 usr/share/man/man1/razers3.1 usr/share/man/man1/sak.1 usr/share/man/man1/seqan_tcoffee.1 usr/share/man/man1/snp_store.1 usr/share/man/man1/stellar.1 usr/share/man/man1/tree_recon.1 gzip -9nf usr/share/doc/seqan-apps/alf/README usr/share/doc/seqan-apps/changelog usr/share/doc/seqan-apps/changelog.Debian usr/share/doc/seqan-apps/dfi/README usr/share/doc/seqan-apps/gustaf/README usr/share/doc/seqan-apps/gustaf/example/adeno.fa usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa usr/share/doc/seqan-apps/insegt/README usr/share/doc/seqan-apps/mason2/README.mason_methylation usr/share/doc/seqan-apps/mason2/README.mason_simulator usr/share/doc/seqan-apps/mason2/README.mason_variator usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa usr/share/doc/seqan-apps/micro_razers/README usr/share/doc/seqan-apps/ngs_roi/README usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf usr/share/doc/seqan-apps/ngs_roi/example/example.bam usr/share/doc/seqan-apps/rabema/README usr/share/doc/seqan-apps/razers/README usr/share/doc/seqan-apps/razers3/README usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01 usr/share/doc/seqan-apps/snp_store/README usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa usr/share/doc/seqan-apps/stellar/README usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta usr/share/man/man1/alf.1 usr/share/man/man1/gustaf.1 usr/share/man/man1/insegt.1 usr/share/man/man1/mason_frag_sequencing.1 usr/share/man/man1/mason_genome.1 usr/share/man/man1/mason_materializer.1 usr/share/man/man1/mason_methylation.1 usr/share/man/man1/micro_razers.1 usr/share/man/man1/pair_align.1 usr/share/man/man1/rabema_build_gold_standard.1 usr/share/man/man1/rabema_evaluate.1 usr/share/man/man1/rabema_prepare_sam.1 usr/share/man/man1/razers.1 usr/share/man/man1/razers3.1 usr/share/man/man1/sak.1 usr/share/man/man1/seqan_tcoffee.1 usr/share/man/man1/snp_store.1 usr/share/man/man1/stellar.1 usr/share/man/man1/tree_recon.1 chmod a-x usr/share/doc/libseqan2-dev/changelog usr/share/doc/libseqan2-dev/changelog.Debian gzip -9nf usr/share/doc/libseqan2-dev/changelog usr/share/doc/libseqan2-dev/changelog.Debian cd '/build/reproducible-path/seqan2-2.4.0+dfsg' cd '/build/reproducible-path/seqan2-2.4.0+dfsg' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_fixperms --arch find debian/seqan-apps ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/seqan-apps/usr/share/doc -type f -a -true -a ! -regex 'debian/seqan-apps/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/seqan-apps/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/seqan-apps/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/seqan-apps -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/seqan-apps/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/seqan-apps/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w for bin in `ls /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/lib/seqan/bin/*.sh` ; do \ chmod +x /build/reproducible-path/seqan2-2.4.0+dfsg/debian/seqan-apps/usr/lib/seqan/bin/`basename ${bin}` ; \ done make[1]: Leaving directory '/build/reproducible-path/seqan2-2.4.0+dfsg' dh_fixperms -Nseqan-apps find debian/libseqan2-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libseqan2-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libseqan2-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libseqan2-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libseqan2-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libseqan2-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_dwz -a install -m0755 -d debian/seqan-apps/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/seqan-apps/usr/lib/debug/.dwz/i386-linux-gnu/seqan-apps.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/seqan-apps.debug -- debian/seqan-apps/usr/lib/seqan/bin/alf debian/seqan-apps/usr/lib/seqan/bin/bam2roi debian/seqan-apps/usr/lib/seqan/bin/bisar debian/seqan-apps/usr/lib/seqan/bin/casbar debian/seqan-apps/usr/lib/seqan/bin/dfi debian/seqan-apps/usr/lib/seqan/bin/four2three debian/seqan-apps/usr/lib/seqan/bin/fx_bam_coverage debian/seqan-apps/usr/lib/seqan/bin/gustaf debian/seqan-apps/usr/lib/seqan/bin/gustaf_mate_joining debian/seqan-apps/usr/lib/seqan/bin/insegt debian/seqan-apps/usr/lib/seqan/bin/mason_frag_sequencing debian/seqan-apps/usr/lib/seqan/bin/mason_genome debian/seqan-apps/usr/lib/seqan/bin/mason_materializer debian/seqan-apps/usr/lib/seqan/bin/mason_methylation debian/seqan-apps/usr/lib/seqan/bin/mason_simulator debian/seqan-apps/usr/lib/seqan/bin/mason_splicing debian/seqan-apps/usr/lib/seqan/bin/mason_variator debian/seqan-apps/usr/lib/seqan/bin/micro_razers debian/seqan-apps/usr/lib/seqan/bin/pair_align debian/seqan-apps/usr/lib/seqan/bin/param_chooser debian/seqan-apps/usr/lib/seqan/bin/rabema_build_gold_standard debian/seqan-apps/usr/lib/seqan/bin/rabema_evaluate debian/seqan-apps/usr/lib/seqan/bin/rabema_prepare_sam debian/seqan-apps/usr/lib/seqan/bin/razers debian/seqan-apps/usr/lib/seqan/bin/razers3 debian/seqan-apps/usr/lib/seqan/bin/rep_sep debian/seqan-apps/usr/lib/seqan/bin/roi_feature_projection debian/seqan-apps/usr/lib/seqan/bin/roi_plot_thumbnails debian/seqan-apps/usr/lib/seqan/bin/s4_join debian/seqan-apps/usr/lib/seqan/bin/s4_search debian/seqan-apps/usr/lib/seqan/bin/sak debian/seqan-apps/usr/lib/seqan/bin/sam2matrix debian/seqan-apps/usr/lib/seqan/bin/samcat debian/seqan-apps/usr/lib/seqan/bin/seqan_tcoffee debian/seqan-apps/usr/lib/seqan/bin/seqcons2 debian/seqan-apps/usr/lib/seqan/bin/sgip debian/seqan-apps/usr/lib/seqan/bin/snp_store debian/seqan-apps/usr/lib/seqan/bin/stellar debian/seqan-apps/usr/lib/seqan/bin/tree_recon objcopy --compress-debug-sections debian/seqan-apps/usr/lib/debug/.dwz/i386-linux-gnu/seqan-apps.debug chmod 0644 -- debian/seqan-apps/usr/lib/debug/.dwz/i386-linux-gnu/seqan-apps.debug dh_strip -a install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_simulator debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2a/2216fc8b8165561685d2c3f4d4885d3d41b7f5.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2a/2216fc8b8165561685d2c3f4d4885d3d41b7f5.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_simulator objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2a/2216fc8b8165561685d2c3f4d4885d3d41b7f5.debug debian/seqan-apps/usr/lib/seqan/bin/mason_simulator install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/s4_search debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/f6/170440f2d081c0ccc645cafde3e7b5d3d3b8db.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/f6/170440f2d081c0ccc645cafde3e7b5d3d3b8db.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/s4_search objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/f6/170440f2d081c0ccc645cafde3e7b5d3d3b8db.debug debian/seqan-apps/usr/lib/seqan/bin/s4_search install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/tree_recon debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b0/59f81f3aa2ec6d6f1af827bce61ac223a4be50.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b0/59f81f3aa2ec6d6f1af827bce61ac223a4be50.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/tree_recon objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b0/59f81f3aa2ec6d6f1af827bce61ac223a4be50.debug debian/seqan-apps/usr/lib/seqan/bin/tree_recon install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_materializer debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e9/0a53bc6b69b2203b647db064796ee1065ee9f1.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e9/0a53bc6b69b2203b647db064796ee1065ee9f1.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_materializer objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e9/0a53bc6b69b2203b647db064796ee1065ee9f1.debug debian/seqan-apps/usr/lib/seqan/bin/mason_materializer install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/stellar debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ac/bd6121befdbf96c1cae54f286c7d09e0e8e882.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ac/bd6121befdbf96c1cae54f286c7d09e0e8e882.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/stellar objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ac/bd6121befdbf96c1cae54f286c7d09e0e8e882.debug debian/seqan-apps/usr/lib/seqan/bin/stellar install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_variator debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/c9/1defad6aeac4b847431d25f945642c5db4f8a3.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/c9/1defad6aeac4b847431d25f945642c5db4f8a3.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_variator objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/c9/1defad6aeac4b847431d25f945642c5db4f8a3.debug debian/seqan-apps/usr/lib/seqan/bin/mason_variator install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/four2three debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/13/32e6af52c1e4a1c1d043f1197977550eb428c0.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/13/32e6af52c1e4a1c1d043f1197977550eb428c0.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/four2three objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/13/32e6af52c1e4a1c1d043f1197977550eb428c0.debug debian/seqan-apps/usr/lib/seqan/bin/four2three install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/sak debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/81/794125c001fb53d0d6556d39983156496a8fce.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/81/794125c001fb53d0d6556d39983156496a8fce.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/sak objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/81/794125c001fb53d0d6556d39983156496a8fce.debug debian/seqan-apps/usr/lib/seqan/bin/sak install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/seqcons2 debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/db/a4d726eb67a749c5a36c97be305f730585e2ef.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/db/a4d726eb67a749c5a36c97be305f730585e2ef.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/seqcons2 objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/db/a4d726eb67a749c5a36c97be305f730585e2ef.debug debian/seqan-apps/usr/lib/seqan/bin/seqcons2 install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/razers3 debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2b/125142ff6f6af4f45687e8a47d44b891fe81af.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2b/125142ff6f6af4f45687e8a47d44b891fe81af.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/razers3 objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/2b/125142ff6f6af4f45687e8a47d44b891fe81af.debug debian/seqan-apps/usr/lib/seqan/bin/razers3 install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/rabema_build_gold_standard debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/88/c86c772421558fb51f99df351190a9a5c57e51.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/88/c86c772421558fb51f99df351190a9a5c57e51.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/rabema_build_gold_standard objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/88/c86c772421558fb51f99df351190a9a5c57e51.debug debian/seqan-apps/usr/lib/seqan/bin/rabema_build_gold_standard install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/bam2roi debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/38/b6f7d1ac61b6a4ba8992116e3c4542a50dc882.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/38/b6f7d1ac61b6a4ba8992116e3c4542a50dc882.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/bam2roi objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/38/b6f7d1ac61b6a4ba8992116e3c4542a50dc882.debug debian/seqan-apps/usr/lib/seqan/bin/bam2roi install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/rabema_evaluate debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3b/396e4d5dd5528a4e6e998b6e33ea5ae078b518.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3b/396e4d5dd5528a4e6e998b6e33ea5ae078b518.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/rabema_evaluate objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3b/396e4d5dd5528a4e6e998b6e33ea5ae078b518.debug debian/seqan-apps/usr/lib/seqan/bin/rabema_evaluate install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/micro_razers debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/8b/de60d12c81d215210c7629bcfd56a7dacda116.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/8b/de60d12c81d215210c7629bcfd56a7dacda116.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/micro_razers objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/8b/de60d12c81d215210c7629bcfd56a7dacda116.debug debian/seqan-apps/usr/lib/seqan/bin/micro_razers install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/gustaf_mate_joining debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/84/803b0f8f9c4cf675201e715421e5b77598a0b5.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/84/803b0f8f9c4cf675201e715421e5b77598a0b5.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/gustaf_mate_joining objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/84/803b0f8f9c4cf675201e715421e5b77598a0b5.debug debian/seqan-apps/usr/lib/seqan/bin/gustaf_mate_joining install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/roi_feature_projection debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0e/e59db60478f846b9d13395ad8e062898460141.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0e/e59db60478f846b9d13395ad8e062898460141.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/roi_feature_projection objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0e/e59db60478f846b9d13395ad8e062898460141.debug debian/seqan-apps/usr/lib/seqan/bin/roi_feature_projection install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/pair_align debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a4/19b6b9ee0c21251f8ca044aa39b6dc1a7570f9.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a4/19b6b9ee0c21251f8ca044aa39b6dc1a7570f9.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/pair_align objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a4/19b6b9ee0c21251f8ca044aa39b6dc1a7570f9.debug debian/seqan-apps/usr/lib/seqan/bin/pair_align install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/rabema_prepare_sam debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/40/13b1e9824fb6752937e6b7789bf79c695d7ba1.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/40/13b1e9824fb6752937e6b7789bf79c695d7ba1.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/rabema_prepare_sam objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/40/13b1e9824fb6752937e6b7789bf79c695d7ba1.debug debian/seqan-apps/usr/lib/seqan/bin/rabema_prepare_sam install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/casbar debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4a/57fec80c4b4f92a1170f1387f6e7a1ee38860b.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4a/57fec80c4b4f92a1170f1387f6e7a1ee38860b.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/casbar objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4a/57fec80c4b4f92a1170f1387f6e7a1ee38860b.debug debian/seqan-apps/usr/lib/seqan/bin/casbar install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/seqan_tcoffee debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/7a/a0fb2aa2067ef56b6555085466888ab6aa14a4.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/7a/a0fb2aa2067ef56b6555085466888ab6aa14a4.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/seqan_tcoffee objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/7a/a0fb2aa2067ef56b6555085466888ab6aa14a4.debug debian/seqan-apps/usr/lib/seqan/bin/seqan_tcoffee install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/razers debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9c/41610a4923e8206904e2bda2bcfcaf8cdfa370.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9c/41610a4923e8206904e2bda2bcfcaf8cdfa370.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/razers objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9c/41610a4923e8206904e2bda2bcfcaf8cdfa370.debug debian/seqan-apps/usr/lib/seqan/bin/razers install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/dfi debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6f/28c80818a45e66ef03231ca6421eb93e152f1a.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6f/28c80818a45e66ef03231ca6421eb93e152f1a.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/dfi objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6f/28c80818a45e66ef03231ca6421eb93e152f1a.debug debian/seqan-apps/usr/lib/seqan/bin/dfi install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/param_chooser debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a8/12cdad4a85503151ca35820899540deba41442.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a8/12cdad4a85503151ca35820899540deba41442.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/param_chooser objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a8/12cdad4a85503151ca35820899540deba41442.debug debian/seqan-apps/usr/lib/seqan/bin/param_chooser install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/roi_plot_thumbnails debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2/ea2bfe842d38e0e6ddcb36d1a1f5745ceb7aa7.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2/ea2bfe842d38e0e6ddcb36d1a1f5745ceb7aa7.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/roi_plot_thumbnails objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2/ea2bfe842d38e0e6ddcb36d1a1f5745ceb7aa7.debug debian/seqan-apps/usr/lib/seqan/bin/roi_plot_thumbnails install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/sgip debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e/64bb6281efb4489351245b1663ea6ff99becf9.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e/64bb6281efb4489351245b1663ea6ff99becf9.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/sgip objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e/64bb6281efb4489351245b1663ea6ff99becf9.debug debian/seqan-apps/usr/lib/seqan/bin/sgip install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/bisar debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4d/a36622ea2beb20529f39900744d560b0b32846.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4d/a36622ea2beb20529f39900744d560b0b32846.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/bisar objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/4d/a36622ea2beb20529f39900744d560b0b32846.debug debian/seqan-apps/usr/lib/seqan/bin/bisar install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_methylation debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e/c129526689a57f5a632f0b520e4dd98ea66ff9.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e/c129526689a57f5a632f0b520e4dd98ea66ff9.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_methylation objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/6e/c129526689a57f5a632f0b520e4dd98ea66ff9.debug debian/seqan-apps/usr/lib/seqan/bin/mason_methylation install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/snp_store debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a7/96abf19af83fd3b3207587b9e0d402a68878e2.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a7/96abf19af83fd3b3207587b9e0d402a68878e2.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/snp_store objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/a7/96abf19af83fd3b3207587b9e0d402a68878e2.debug debian/seqan-apps/usr/lib/seqan/bin/snp_store install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_frag_sequencing debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e4/dbe3c7e4bb1dfe16bfa297dbcd7e5662910875.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e4/dbe3c7e4bb1dfe16bfa297dbcd7e5662910875.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_frag_sequencing objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/e4/dbe3c7e4bb1dfe16bfa297dbcd7e5662910875.debug debian/seqan-apps/usr/lib/seqan/bin/mason_frag_sequencing install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/gustaf debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9d/88fea2b15c1312fa49f2266337a6a9581d32d0.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9d/88fea2b15c1312fa49f2266337a6a9581d32d0.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/gustaf objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/9d/88fea2b15c1312fa49f2266337a6a9581d32d0.debug debian/seqan-apps/usr/lib/seqan/bin/gustaf install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/fx_bam_coverage debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/02/c794989c8aa73f84f62a666589550ecf7375d7.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/02/c794989c8aa73f84f62a666589550ecf7375d7.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/fx_bam_coverage objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/02/c794989c8aa73f84f62a666589550ecf7375d7.debug debian/seqan-apps/usr/lib/seqan/bin/fx_bam_coverage install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/sam2matrix debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0a/1312eb41ef4f617a2146788731e28fc930d4c8.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0a/1312eb41ef4f617a2146788731e28fc930d4c8.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/sam2matrix objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0a/1312eb41ef4f617a2146788731e28fc930d4c8.debug debian/seqan-apps/usr/lib/seqan/bin/sam2matrix install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_splicing debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2/a9c98f0a435c2b654d16711d1f4501970b74fc.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2/a9c98f0a435c2b654d16711d1f4501970b74fc.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_splicing objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/b2/a9c98f0a435c2b654d16711d1f4501970b74fc.debug debian/seqan-apps/usr/lib/seqan/bin/mason_splicing install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/45 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/insegt debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/45/213fe6cfad7cf715975f3627d228642a47e1dc.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/45/213fe6cfad7cf715975f3627d228642a47e1dc.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/insegt objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/45/213fe6cfad7cf715975f3627d228642a47e1dc.debug debian/seqan-apps/usr/lib/seqan/bin/insegt install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/mason_genome debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3c/c330091d6e718d12bb11ce75949e25725c69c5.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3c/c330091d6e718d12bb11ce75949e25725c69c5.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/mason_genome objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/3c/c330091d6e718d12bb11ce75949e25725c69c5.debug debian/seqan-apps/usr/lib/seqan/bin/mason_genome install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/alf debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ec/b754bb59b739edf4bacae20fe701ad52e75a5d.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ec/b754bb59b739edf4bacae20fe701ad52e75a5d.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/alf objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/ec/b754bb59b739edf4bacae20fe701ad52e75a5d.debug debian/seqan-apps/usr/lib/seqan/bin/alf install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/32 objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/rep_sep debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/32/58804783855e6e53ecef44d5dcc3a5047bbee9.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/32/58804783855e6e53ecef44d5dcc3a5047bbee9.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/rep_sep objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/32/58804783855e6e53ecef44d5dcc3a5047bbee9.debug debian/seqan-apps/usr/lib/seqan/bin/rep_sep install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/samcat debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/1f/b589e46b16de1be01c467f70cdee454c08c880.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/1f/b589e46b16de1be01c467f70cdee454c08c880.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/samcat objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/1f/b589e46b16de1be01c467f70cdee454c08c880.debug debian/seqan-apps/usr/lib/seqan/bin/samcat install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/seqan-apps/usr/lib/seqan/bin/s4_join debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0d/5df364df86cff33c218625c5cd08d907679b4b.debug chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0d/5df364df86cff33c218625c5cd08d907679b4b.debug strip --remove-section=.comment --remove-section=.note debian/seqan-apps/usr/lib/seqan/bin/s4_join objcopy --add-gnu-debuglink debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.build-id/0d/5df364df86cff33c218625c5cd08d907679b4b.debug debian/seqan-apps/usr/lib/seqan/bin/s4_join install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/seqan-apps/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/seqan-apps/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/seqan-apps/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/seqan-apps/usr/lib/debug install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/usr/share/doc ln -s seqan-apps debian/.debhelper/seqan-apps/dbgsym-root/usr/share/doc/seqan-apps-dbgsym install -m0755 -d debian/.debhelper/seqan-apps dh_makeshlibs -a rm -f debian/seqan-apps/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/seqan-apps/DEBIAN dpkg-shlibdeps -Tdebian/seqan-apps.substvars debian/seqan-apps/usr/lib/seqan/bin/mason_simulator debian/seqan-apps/usr/lib/seqan/bin/s4_search debian/seqan-apps/usr/lib/seqan/bin/tree_recon debian/seqan-apps/usr/lib/seqan/bin/mason_materializer debian/seqan-apps/usr/lib/seqan/bin/stellar debian/seqan-apps/usr/lib/seqan/bin/mason_variator debian/seqan-apps/usr/lib/seqan/bin/four2three debian/seqan-apps/usr/lib/seqan/bin/sak debian/seqan-apps/usr/lib/seqan/bin/seqcons2 debian/seqan-apps/usr/lib/seqan/bin/razers3 debian/seqan-apps/usr/lib/seqan/bin/rabema_build_gold_standard debian/seqan-apps/usr/lib/seqan/bin/bam2roi debian/seqan-apps/usr/lib/seqan/bin/rabema_evaluate debian/seqan-apps/usr/lib/seqan/bin/micro_razers debian/seqan-apps/usr/lib/seqan/bin/gustaf_mate_joining debian/seqan-apps/usr/lib/seqan/bin/roi_feature_projection debian/seqan-apps/usr/lib/seqan/bin/pair_align debian/seqan-apps/usr/lib/seqan/bin/rabema_prepare_sam debian/seqan-apps/usr/lib/seqan/bin/casbar debian/seqan-apps/usr/lib/seqan/bin/seqan_tcoffee debian/seqan-apps/usr/lib/seqan/bin/razers debian/seqan-apps/usr/lib/seqan/bin/dfi debian/seqan-apps/usr/lib/seqan/bin/param_chooser debian/seqan-apps/usr/lib/seqan/bin/roi_plot_thumbnails debian/seqan-apps/usr/lib/seqan/bin/sgip debian/seqan-apps/usr/lib/seqan/bin/bisar debian/seqan-apps/usr/lib/seqan/bin/mason_methylation debian/seqan-apps/usr/lib/seqan/bin/snp_store debian/seqan-apps/usr/lib/seqan/bin/mason_frag_sequencing debian/seqan-apps/usr/lib/seqan/bin/gustaf debian/seqan-apps/usr/lib/seqan/bin/fx_bam_coverage debian/seqan-apps/usr/lib/seqan/bin/sam2matrix debian/seqan-apps/usr/lib/seqan/bin/mason_splicing debian/seqan-apps/usr/lib/seqan/bin/insegt debian/seqan-apps/usr/lib/seqan/bin/mason_genome debian/seqan-apps/usr/lib/seqan/bin/alf debian/seqan-apps/usr/lib/seqan/bin/rep_sep debian/seqan-apps/usr/lib/seqan/bin/samcat debian/seqan-apps/usr/lib/seqan/bin/s4_join dh_installdeb install -m0755 -d debian/seqan-apps/DEBIAN install -m0755 -d debian/libseqan2-dev/DEBIAN dh_gencontrol install -m0755 -d debian/seqan-apps/DEBIAN echo misc:Depends= >> debian/seqan-apps.substvars echo misc:Pre-Depends= >> debian/seqan-apps.substvars install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/DEBIAN dpkg-gencontrol -pseqan-apps -ldebian/changelog -Tdebian/seqan-apps.substvars -cdebian/control -Pdebian/.debhelper/seqan-apps/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=seqan-apps-dbgsym "-DDepends=seqan-apps (= \${binary:Version})" "-DDescription=debug symbols for seqan-apps" "-DBuild-Ids=02c794989c8aa73f84f62a666589550ecf7375d7 0a1312eb41ef4f617a2146788731e28fc930d4c8 0d5df364df86cff33c218625c5cd08d907679b4b 0ee59db60478f846b9d13395ad8e062898460141 1332e6af52c1e4a1c1d043f1197977550eb428c0 1fb589e46b16de1be01c467f70cdee454c08c880 2a2216fc8b8165561685d2c3f4d4885d3d41b7f5 2b125142ff6f6af4f45687e8a47d44b891fe81af 3258804783855e6e53ecef44d5dcc3a5047bbee9 38b6f7d1ac61b6a4ba8992116e3c4542a50dc882 3b396e4d5dd5528a4e6e998b6e33ea5ae078b518 3cc330091d6e718d12bb11ce75949e25725c69c5 4013b1e9824fb6752937e6b7789bf79c695d7ba1 45213fe6cfad7cf715975f3627d228642a47e1dc 4a57fec80c4b4f92a1170f1387f6e7a1ee38860b 4da36622ea2beb20529f39900744d560b0b32846 6e64bb6281efb4489351245b1663ea6ff99becf9 6ec129526689a57f5a632f0b520e4dd98ea66ff9 6f28c80818a45e66ef03231ca6421eb93e152f1a 7aa0fb2aa2067ef56b6555085466888ab6aa14a4 81794125c001fb53d0d6556d39983156496a8fce 84803b0f8f9c4cf675201e715421e5b77598a0b5 88c86c772421558fb51f99df351190a9a5c57e51 8bde60d12c81d215210c7629bcfd56a7dacda116 9c41610a4923e8206904e2bda2bcfcaf8cdfa370 9d88fea2b15c1312fa49f2266337a6a9581d32d0 a419b6b9ee0c21251f8ca044aa39b6dc1a7570f9 a796abf19af83fd3b3207587b9e0d402a68878e2 a812cdad4a85503151ca35820899540deba41442 acbd6121befdbf96c1cae54f286c7d09e0e8e882 b059f81f3aa2ec6d6f1af827bce61ac223a4be50 b2a9c98f0a435c2b654d16711d1f4501970b74fc b2ea2bfe842d38e0e6ddcb36d1a1f5745ceb7aa7 c91defad6aeac4b847431d25f945642c5db4f8a3 dba4d726eb67a749c5a36c97be305f730585e2ef e4dbe3c7e4bb1dfe16bfa297dbcd7e5662910875 e90a53bc6b69b2203b647db064796ee1065ee9f1 ecb754bb59b739edf4bacae20fe701ad52e75a5d f6170440f2d081c0ccc645cafde3e7b5d3d3b8db" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libseqan2-dev/DEBIAN echo misc:Depends= >> debian/libseqan2-dev.substvars echo misc:Pre-Depends= >> debian/libseqan2-dev.substvars dpkg-gencontrol -plibseqan2-dev -ldebian/changelog -Tdebian/libseqan2-dev.substvars -cdebian/control -Pdebian/libseqan2-dev chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/DEBIAN/control dpkg-gencontrol -pseqan-apps -ldebian/changelog -Tdebian/seqan-apps.substvars -cdebian/control -Pdebian/seqan-apps chmod 0644 -- debian/libseqan2-dev/DEBIAN/control chmod 0644 -- debian/seqan-apps/DEBIAN/control dh_md5sums install -m0755 -d debian/seqan-apps/DEBIAN install -m0755 -d debian/libseqan2-dev/DEBIAN cd debian/seqan-apps >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libseqan2-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libseqan2-dev/DEBIAN/md5sums chmod 0644 -- debian/seqan-apps/DEBIAN/md5sums install -m0755 -d debian/.debhelper/seqan-apps/dbgsym-root/DEBIAN cd debian/.debhelper/seqan-apps/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/seqan-apps/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/.debhelper/seqan-apps/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libseqan2-dev .. dpkg-deb --root-owner-group --build debian/seqan-apps .. dpkg-deb: building package 'libseqan2-dev' in '../libseqan2-dev_2.4.0+dfsg-16_all.deb'. dpkg-deb: building package 'seqan-apps-dbgsym' in '../seqan-apps-dbgsym_2.4.0+dfsg-16_i386.deb'. dpkg-deb: building package 'seqan-apps' in '../seqan-apps_2.4.0+dfsg-16_i386.deb'. dpkg-genbuildinfo --build=binary -O../seqan2_2.4.0+dfsg-16_i386.buildinfo dpkg-genchanges --build=binary -O../seqan2_2.4.0+dfsg-16_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1633/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1633/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1633 and its subdirectories I: Current time: Thu Oct 30 20:46:24 +14 2025 I: pbuilder-time-stamp: 1761806784